[yt-users] Cluster Compile Issue

[Chenchong Zhu]

Hi Nathan,

I was running with only the gcc module compiled, and everything else
unloaded.  Module list's output is:

Currently Loaded Modulefiles:
  1) gcc/4.6.1


Charles

On Thu, Jul 25, 2013 at 7:36 PM, Nathan Goldbaum <nathan12343 at gmail.com>wrote:

> Hi Charles,
>
> Did you have intel compilers loaded when you ran the install script?
>  What's the output of 'module list'?
>
> You'll want to make sure that you have GNU compilers loaded and intel
> compilers unloaded before running the install script.  If both are loaded
> strange things will happen.
>
> -Nathan
>
>
> On Thu, Jul 25, 2013 at 4:25 PM, Chenchong Zhu <cczhu at astro.utoronto.ca>wrote:
>
>> Hi Kacper (and yt-users),
>>
>> Thanks for your response!
>>
>> I should have been more clear and said that I've only been using the yt
>> install script to do everything, and was surprised that libimf.so wasn't
>> compiled.  The full text of my error is:
>>
>> (yt-x86_64)gpc-f101n084-$ ipython
>> Traceback (most recent call last):
>>   File "/home/m/mhvk/czhu/yt-x86_64/bin/ipython", line 5, in <module>
>>     from IPython.frontend.terminal.ipapp import launch_new_instance
>>   File
>> "/home/m/mhvk/czhu/yt-x86_64/lib/python2.7/site-packages/IPython/__init__.py",
>> line 43, in <module>
>>     from .config.loader import Config
>>   File
>> "/home/m/mhvk/czhu/yt-x86_64/lib/python2.7/site-packages/IPython/config/__init__.py",
>> line 16, in <module>
>>     from .application import *
>>   File
>> "/home/m/mhvk/czhu/yt-x86_64/lib/python2.7/site-packages/IPython/config/application.py",
>> line 22, in <module>
>>     import logging
>>   File "/home/m/mhvk/czhu/yt-x86_64/lib/python2.7/logging/__init__.py",
>> line 26, in <module>
>>     import sys, os, time, cStringIO, traceback, warnings, weakref
>> ImportError: libimf.so: cannot open shared object file: No such file or
>> directory
>>
>>  Best,
>>
>> Charles
>>
>> P.S. I wrote a meaningless "(though )" in my last e-mail, which was
>> supposed to report that installing ZeroMQ using install_script.bash gives
>> the error
>>
>> "stream_engine.hpp(97): error #82: storage class is not first
>>           const static size_t greeting_size = 12"
>>
>>
>> which I had to manually fix in the source to "static const", and then
>> rerun install_script.bash.
>>
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>>
>>
>
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