[yt-users] Cluster Compile Issue

[Kacper Kowalik]

On 26.07.2013 01:25, Chenchong Zhu wrote:
> Hi Kacper (and yt-users),
> 
> Thanks for your response!
> 
> I should have been more clear and said that I've only been using the yt
> install script to do everything, and was surprised that libimf.so wasn't
> compiled.  The full text of my error is:
> 
> (yt-x86_64)gpc-f101n084-$ ipython
> Traceback (most recent call last):
>   File "/home/m/mhvk/czhu/yt-x86_64/bin/ipython", line 5, in <module>
>     from IPython.frontend.terminal.ipapp import launch_new_instance
>   File
> "/home/m/mhvk/czhu/yt-x86_64/lib/python2.7/site-packages/IPython/__init__.py",
> line 43, in <module>
>     from .config.loader import Config
>   File
> "/home/m/mhvk/czhu/yt-x86_64/lib/python2.7/site-packages/IPython/config/__init__.py",
> line 16, in <module>
>     from .application import *
>   File
> "/home/m/mhvk/czhu/yt-x86_64/lib/python2.7/site-packages/IPython/config/application.py",
> line 22, in <module>
>     import logging
>   File "/home/m/mhvk/czhu/yt-x86_64/lib/python2.7/logging/__init__.py",
> line 26, in <module>
>     import sys, os, time, cStringIO, traceback, warnings, weakref
> ImportError: libimf.so: cannot open shared object file: No such file or
> directory

Hi,
it looks like the python itself was compiled with intel. You could
verify that by running:

  cd /home/m/mhvk/czhu/yt-x86_64/lib/python2.7/lib-dynload
  readelf -d cStringIO.so -d | grep NEEDED

See if libimf.so pops there. If that's the case I think you should
remove the python2.7* in /home/m/mhvk/czhu/yt-x86_64/src and try
installing it again via install_script.sh. Make sure you do *not* have
any references to intel in LD_LIBRARY_PATH.

Alternatively, you could try running ipython with intel module loaded.

If you could paste output 'env' on http://paste.yt-project.org/ we could
try to find out where the intel compiler lurks ;)

Cheers,
Kacper

> Best,
> 
> Charles
> 
> P.S. I wrote a meaningless "(though )" in my last e-mail, which was
> supposed to report that installing ZeroMQ using install_script.bash gives
> the error
> 
> "stream_engine.hpp(97): error #82: storage class is not first
>           const static size_t greeting_size = 12"
> 
> 
> which I had to manually fix in the source to "static const", and then rerun
> install_script.bash.
> 
> 
> 
> _______________________________________________
> yt-users mailing list
> yt-users at lists.spacepope.org
> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
> 


-------------- next part --------------
A non-text attachment was scrubbed...
Name: signature.asc
Type: application/pgp-signature
Size: 901 bytes
Desc: OpenPGP digital signature
URL: <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20130726/412e35a9/attachment.sig>