Hi Nathan,<div><br></div><div>I was running with only the gcc module compiled, and everything else unloaded. Module list's output is:</div><div><br></div><blockquote style="margin:0 0 0 40px;border:none;padding:0px"><div>
<div>Currently Loaded Modulefiles:</div></div><div><div> 1) gcc/4.6.1</div></div></blockquote><div><div><br></div><div>Charles</div><br><div class="gmail_quote">On Thu, Jul 25, 2013 at 7:36 PM, Nathan Goldbaum <span dir="ltr"><<a href="mailto:nathan12343@gmail.com" target="_blank">nathan12343@gmail.com</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hi Charles,<div><br></div><div>Did you have intel compilers loaded when you ran the install script? What's the output of 'module list'?</div>
<div><br></div><div>You'll want to make sure that you have GNU compilers loaded and intel compilers unloaded before running the install script. If both are loaded strange things will happen.</div>
<div><br></div><div>-Nathan</div></div><div class="gmail_extra"><br><br><div class="gmail_quote"><div><div class="h5">On Thu, Jul 25, 2013 at 4:25 PM, Chenchong Zhu <span dir="ltr"><<a href="mailto:cczhu@astro.utoronto.ca" target="_blank">cczhu@astro.utoronto.ca</a>></span> wrote:<br>
</div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="h5"><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif">Hi Kacper (and yt-users),</span><div>
<span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif"><br>
</span></div><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif">Thanks for your response! </span></div><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif"><br>
</span></div><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif">I should have been more clear and said that I've only been using the yt install script to do everything, and was surprised that libimf.so wasn't compiled. The full text of my error is:</span></div>
<div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif"><br></span></div><blockquote style="margin:0 0 0 40px;border:none;padding:0px"><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif"><div>
(yt-x86_64)gpc-f101n084-$ ipython</div></span></div><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif"><div>Traceback (most recent call last):</div></span></div><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif"><div>
File "/home/m/mhvk/czhu/yt-x86_64/bin/ipython", line 5, in <module></div></span></div><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif"><div> from IPython.frontend.terminal.ipapp import launch_new_instance</div>
</span></div><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif"><div> File "/home/m/mhvk/czhu/yt-x86_64/lib/python2.7/site-packages/IPython/__init__.py", line 43, in <module></div>
</span></div><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif"><div> from .config.loader import Config</div></span></div><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif"><div>
File "/home/m/mhvk/czhu/yt-x86_64/lib/python2.7/site-packages/IPython/config/__init__.py", line 16, in <module></div></span></div><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif"><div>
from .application import *</div></span></div><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif"><div> File "/home/m/mhvk/czhu/yt-x86_64/lib/python2.7/site-packages/IPython/config/application.py", line 22, in <module></div>
</span></div><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif"><div> import logging</div></span></div><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif"><div>
File "/home/m/mhvk/czhu/yt-x86_64/lib/python2.7/logging/__init__.py", line 26, in <module></div></span></div><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif"><div> import sys, os, time, cStringIO, traceback, warnings, weakref</div>
</span></div><div><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif"><div>ImportError: libimf.so: cannot open shared object file: No such file or directory</div><div><br></div></span></div>
</div></blockquote>
<font color="#222222" face="arial, sans-serif">Best,</font><div><font color="#222222" face="arial, sans-serif"><br></font></div><div><font color="#222222" face="arial, sans-serif">Charles</font><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif"><br>
</span></div><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif">P.S. I wrote a meaningless "(though )" in my last e-mail, which was supposed to report that installing ZeroMQ using install_script.bash gives the error</span></div>
<div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif"><br></span></div><blockquote style="margin:0 0 0 40px;border:none;padding:0px"><div><span style="color:rgb(34,34,34);font-size:13px;font-family:arial,sans-serif">"</span>stream_engine.hpp(97): error #82: storage class is not first</div>
<div> const static size_t greeting_size = 12"</div></blockquote><div><br></div><div>which I had to manually fix in the source to "static const", and then rerun install_script.bash.</div>
</div>
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