[yt-users] scipy broke yt? maybe python?

[Nathan Goldbaum]

Hi Stephanie,

It's very hard to say what's going wrong without more information.

Can you get a core dump or run python under gdb to get a stack trace at the
place where the segmentation fault happens?

Can you run this on your laptop? If so, do you get a segmentation fault
there?

-Nathan

On Fri, Jul 1, 2016 at 2:25 PM, Stephanie Tonnesen <stonnes at gmail.com>
wrote:

> Hi all,
>
> I have the yt-conda installation of yt.  I am trying to create an
> absorption spectrum, so need the command "generate_total_fit".
>
> yt told me I needed scipy for this to work.  yt does not have scipy.  So I
> typed:
> >pip install scipy
>
> scipy was installed.
>
> However, then my submission script no longer worked at all and I was given
> the error:
>
> /var/spool/torque/mom_priv/jobs/50052.mies.stanford.edu.SC: line 26:
> 3750 Segmentation fault      python HI_absorbers.py
>
> When I pip uninstall scipy, my code runs again!
> The only commands in my script are
> source /home/stonnes/yt-conda/bin/activate
> python HI_absorbers.py
>
> Can anyone help me out with this?
>
> Thanks!
> Stephanie
>
> --
> Dr. Stephanie Tonnesen
> Alvin E. Nashman Postdoctoral Fellow
> Carnegie Observatories, Pasadena, CA
> stonnes at gmail.com
>
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>
>
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