[yt-users] Python SSL failure, yt3, osx

Wed Sep 24 11:48:37 PDT 2014

I take back what I said before.  I also had issues with SSL because I'm
behind a proxy and for some reason the proxy environment variables weren't
being honored.  I think reinstalling OpenSSL didn't fix the issue for me.

What I did change, however, was making mercurial use SSH instead of HTTPS
to clone the yt repo - and that seemed to work.  I changed these two lines
from '...clone https://bitbucket...' to 'clone ssh://hg@bitbucket...'
https://bitbucket.org/yt_analysis/yt/src/4cf5c5369df9b012759ab979330d8e356d1b0e00/doc/install_script.sh?at=yt#cl-832
https://bitbucket.org/yt_analysis/yt/src/4cf5c5369df9b012759ab979330d8e356d1b0e00/doc/install_script.sh?at=yt#cl-836

That said, Jeff's suggestion is probably a better fix, at least for
something that should get pushed back to the install script.

On Wed, Sep 24, 2014 at 11:55 AM, Nathan Goldbaum <nathan12343 at gmail.com>
wrote:

> Shoot, unfortunately the OSX machines I have access to are on 10.8, so I
> can't reproduce this or debug it here.
>
> If Jeff's suggestion works, we'd very much appreciate getting a pull
> request with the fixes.
>
> On Wed, Sep 24, 2014 at 10:47 AM, j s oishi <jsoishi at gmail.com> wrote:
>
>> Hi David,
>>
>> I added PY_CFLAGS and dumped it here:
>>
>> ( ./configure --prefix=${DEST_DIR}/ ${PYCONF_ARGS} CFLAGS=${PY_CFLAGS} 2>&1 ) 1>> ${LOG_FILE} || do_exit
>>
>>
>> yt builds python on this line,
>>
>>
>> https://bitbucket.org/yt_analysis/yt/src/4cf5c5369df9b012759ab979330d8e356d1b0e00/doc/install_script.sh?at=yt#cl-793
>>
>> and you should be able to do the exact same trick...I'd do it, but I
>> don't have a mac to test it on.
>>
>> j
>>
>> On Wed, Sep 24, 2014 at 1:40 PM, David Collins <dcollins4096 at gmail.com>
>> wrote:
>>
>>>
>>> Thanks a ton for the input.
>>>
>>> Nathan:  I've put the full log here:
>>> http://nazare.physics.fsu.edu/yt_install.log.  I re-pasted the last
>>> bunch of lines below, what I pasted before was from my n-th attempt, so was
>>> flawed.  The prior \aleph_0 lines were seemingly successful byt-compiling
>>> statments about mercurial.
>>>
>>> Jeff-- What's the yt analog of the deadalus PY_CFLAGS?  I looked in the
>>> script but didn't see a similar flag.
>>>
>>> The odd bit with this is that I did this successfully once a year ago on
>>> the same machine.  I think the successful install was _before_ I installed
>>> homebrew.
>>>
>>> Do you think it broke with the heartblead security patch?  (Or, the fact
>>> that I"m on an earlier openssl?)  Does the homebrew re-install of openssl
>>> take care of the problem, or is doing it from source necessary?
>>>
>>> d.
>>>
>>> byte-compiling
>>> /Users/dcollins/local-2014-09-23-yt3/lib/python2.7/site-packages/mercurial/worker.py
>>> to worker.pyc
>>> running install_scripts
>>> copying build/scripts-2.7/hg -> /Users/dcollins/local-2014-09-23-yt3/bin
>>> changing mode of /Users/dcollins/local-2014-09-23-yt3/bin/hg to 755
>>> running install_egg_info
>>> Writing
>>> /Users/dcollins/local-2014-09-23-yt3/lib/python2.7/site-packages/mercurial-3.1-py2.7.egg-info
>>> using https://bitbucket.org/yt_analysis/yt-supplemental/
>>> sending capabilities command
>>> abort: Python SSL support not found
>>> using https://bitbucket.org/yt_analysis/yt/
>>> sending capabilities command
>>> abort: Python SSL support not found
>>> abort: repository /Users/dcollins/local-2014-09-23-yt3/src/yt-hg/ not
>>> found!
>>> /Users/dcollins/local-2014-09-23-yt3/bin/python2.7: can't open file
>>> '/Users/dcollins/local-2014-09-23-yt3/src/yt-hg//distribute_setup.py':
>>> [Errno 2] No such file or directory
>>>
>>>
>>> On Wed, Sep 24, 2014 at 12:58 PM, Chris Malone <chris.m.malone at gmail.com
>>> > wrote:
>>>
>>>> I had the same issue, even with homebrew.  I solved it by doing what
>>>> Fernando mentioned - reinstall openssl.
>>>>
>>>> On Wed, Sep 24, 2014 at 10:53 AM, Fernando Becerra <
>>>> becerrafernando at gmail.com> wrote:
>>>>
>>>>> I had the same issue a few days ago when I tried to install yt using
>>>>> the install script on a brand new macbook pro with OSX 10.9. I ended up
>>>>> reinstalling the openssl libraries from source and that worked for me.
>>>>>
>>>>> Fernando.
>>>>>
>>>>> On Sep 24, 2014, at 12:10 PM, Nathan Goldbaum <nathan12343 at gmail.com>
>>>>> wrote:
>>>>>
>>>>> Hmm, interesting. I have access to a home brew-less Mac mini at the
>>>>> office, so I can test this out later today and try to reproduce and figure
>>>>> out a fix.
>>>>>
>>>>> On Wednesday, September 24, 2014, j s oishi <jsoishi at gmail.com> wrote:
>>>>>
>>>>>> Hi Nathan,
>>>>>>
>>>>>> Any chance you had homebrew on that machine? We've been finding this
>>>>>> issue when homebrew is not installed. 10.9 seems to have moved the location
>>>>>> of the ssl headers, so python just doesn't build _ssl, and a whole bunch of
>>>>>> things that depend on it fail. When homebrew is installed, it does
>>>>>> something or other to help the python build find ssl. I have no idea what
>>>>>> that might be; this is pure cowboy science on my part.
>>>>>>
>>>>>> j
>>>>>>
>>>>>> On Wed, Sep 24, 2014 at 12:01 PM, Nathan Goldbaum <
>>>>>> nathan12343 at gmail.com> wrote:
>>>>>>
>>>>>>> Hi Dave,
>>>>>>>
>>>>>>> I think the original error might have occurred earlier in the log.
>>>>>>> Can you upload the full install log somewhere?
>>>>>>>
>>>>>>> FWIW, I successfully built yt-3 from the install script on OSX 10.9
>>>>>>> the last time we updated the dependencies.
>>>>>>>
>>>>>>> Nathan
>>>>>>>
>>>>>>>
>>>>>>> On Wednesday, September 24, 2014, David Collins <
>>>>>>> dcollins4096 at gmail.com> wrote:
>>>>>>>
>>>>>>>> Hi, Everybody--
>>>>>>>>
>>>>>>>> I have a potentially dumb question.  I'm installing yt3.0 (a fresh
>>>>>>>> install) on osx 10.9, and I get the following error.  It looks like the
>>>>>>>> error is coming from the hg clone, for some reason the newly installed
>>>>>>>> python can't find SSL.  I can use another install of hg on this machine
>>>>>>>> just fine.  Has anyone else seen this, and do you know if there's an easy
>>>>>>>> fix?
>>>>>>>>
>>>>>>>> Thanks!
>>>>>>>> d.
>>>>>>>>
>>>>>>>> Using curl
>>>>>>>> Using shasum -a 512
>>>>>>>> Cloning yt
>>>>>>>> Setting YT_DIR=/Users/dcollins/local-2014-09-23-yt3/src/yt-hg/
>>>>>>>> Installing distribute
>>>>>>>> ********************************************
>>>>>>>>         FAILURE REPORT:
>>>>>>>> ********************************************
>>>>>>>>
>>>>>>>> abort: repository /Users/dcollins/local-2014-09-23-yt3/src/yt-hg/
>>>>>>>> not found!
>>>>>>>> /Users/dcollins/local-2014-09-23-yt3/bin/python2.7: can't open file
>>>>>>>> '/Users/dcollins/local-2014-09-23-yt3/src/yt-hg//distribute_setup.py':
>>>>>>>> [Errno 2] No such file or directory
>>>>>>>> using https://bitbucket.org/yt_analysis/yt-supplemental/
>>>>>>>> sending capabilities command
>>>>>>>> abort: Python SSL support not found
>>>>>>>> using https://bitbucket.org/yt_analysis/yt/
>>>>>>>> sending capabilities command
>>>>>>>> abort: Python SSL support not found
>>>>>>>> abort: repository /Users/dcollins/local-2014-09-23-yt3/src/yt-hg/
>>>>>>>> not found!
>>>>>>>> /Users/dcollins/local-2014-09-23-yt3/bin/python2.7: can't open file
>>>>>>>> '/Users/dcollins/local-2014-09-23-yt3/src/yt-hg//distribute_setup.py':
>>>>>>>> [Errno 2] No such file or directory
>>>>>>>>
>>>>>>>>
>>>>>>>> --
>>>>>>>> -- Sent from a computer.
>>>>>>>>
>>>>>>>
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