[yt-users] Python SSL failure, yt3, osx

Nathan Goldbaum nathan12343 at gmail.com
Wed Sep 24 10:55:45 PDT 2014


Shoot, unfortunately the OSX machines I have access to are on 10.8, so I
can't reproduce this or debug it here.

If Jeff's suggestion works, we'd very much appreciate getting a pull
request with the fixes.

On Wed, Sep 24, 2014 at 10:47 AM, j s oishi <jsoishi at gmail.com> wrote:

> Hi David,
>
> I added PY_CFLAGS and dumped it here:
>
> ( ./configure --prefix=${DEST_DIR}/ ${PYCONF_ARGS} CFLAGS=${PY_CFLAGS} 2>&1 ) 1>> ${LOG_FILE} || do_exit
>
>
> yt builds python on this line,
>
>
> https://bitbucket.org/yt_analysis/yt/src/4cf5c5369df9b012759ab979330d8e356d1b0e00/doc/install_script.sh?at=yt#cl-793
>
> and you should be able to do the exact same trick...I'd do it, but I don't
> have a mac to test it on.
>
> j
>
> On Wed, Sep 24, 2014 at 1:40 PM, David Collins <dcollins4096 at gmail.com>
> wrote:
>
>>
>> Thanks a ton for the input.
>>
>> Nathan:  I've put the full log here:
>> http://nazare.physics.fsu.edu/yt_install.log.  I re-pasted the last
>> bunch of lines below, what I pasted before was from my n-th attempt, so was
>> flawed.  The prior \aleph_0 lines were seemingly successful byt-compiling
>> statments about mercurial.
>>
>> Jeff-- What's the yt analog of the deadalus PY_CFLAGS?  I looked in the
>> script but didn't see a similar flag.
>>
>> The odd bit with this is that I did this successfully once a year ago on
>> the same machine.  I think the successful install was _before_ I installed
>> homebrew.
>>
>> Do you think it broke with the heartblead security patch?  (Or, the fact
>> that I"m on an earlier openssl?)  Does the homebrew re-install of openssl
>> take care of the problem, or is doing it from source necessary?
>>
>> d.
>>
>> byte-compiling
>> /Users/dcollins/local-2014-09-23-yt3/lib/python2.7/site-packages/mercurial/worker.py
>> to worker.pyc
>> running install_scripts
>> copying build/scripts-2.7/hg -> /Users/dcollins/local-2014-09-23-yt3/bin
>> changing mode of /Users/dcollins/local-2014-09-23-yt3/bin/hg to 755
>> running install_egg_info
>> Writing
>> /Users/dcollins/local-2014-09-23-yt3/lib/python2.7/site-packages/mercurial-3.1-py2.7.egg-info
>> using https://bitbucket.org/yt_analysis/yt-supplemental/
>> sending capabilities command
>> abort: Python SSL support not found
>> using https://bitbucket.org/yt_analysis/yt/
>> sending capabilities command
>> abort: Python SSL support not found
>> abort: repository /Users/dcollins/local-2014-09-23-yt3/src/yt-hg/ not
>> found!
>> /Users/dcollins/local-2014-09-23-yt3/bin/python2.7: can't open file
>> '/Users/dcollins/local-2014-09-23-yt3/src/yt-hg//distribute_setup.py':
>> [Errno 2] No such file or directory
>>
>>
>> On Wed, Sep 24, 2014 at 12:58 PM, Chris Malone <chris.m.malone at gmail.com>
>> wrote:
>>
>>> I had the same issue, even with homebrew.  I solved it by doing what
>>> Fernando mentioned - reinstall openssl.
>>>
>>> On Wed, Sep 24, 2014 at 10:53 AM, Fernando Becerra <
>>> becerrafernando at gmail.com> wrote:
>>>
>>>> I had the same issue a few days ago when I tried to install yt using
>>>> the install script on a brand new macbook pro with OSX 10.9. I ended up
>>>> reinstalling the openssl libraries from source and that worked for me.
>>>>
>>>> Fernando.
>>>>
>>>> On Sep 24, 2014, at 12:10 PM, Nathan Goldbaum <nathan12343 at gmail.com>
>>>> wrote:
>>>>
>>>> Hmm, interesting. I have access to a home brew-less Mac mini at the
>>>> office, so I can test this out later today and try to reproduce and figure
>>>> out a fix.
>>>>
>>>> On Wednesday, September 24, 2014, j s oishi <jsoishi at gmail.com> wrote:
>>>>
>>>>> Hi Nathan,
>>>>>
>>>>> Any chance you had homebrew on that machine? We've been finding this
>>>>> issue when homebrew is not installed. 10.9 seems to have moved the location
>>>>> of the ssl headers, so python just doesn't build _ssl, and a whole bunch of
>>>>> things that depend on it fail. When homebrew is installed, it does
>>>>> something or other to help the python build find ssl. I have no idea what
>>>>> that might be; this is pure cowboy science on my part.
>>>>>
>>>>> j
>>>>>
>>>>> On Wed, Sep 24, 2014 at 12:01 PM, Nathan Goldbaum <
>>>>> nathan12343 at gmail.com> wrote:
>>>>>
>>>>>> Hi Dave,
>>>>>>
>>>>>> I think the original error might have occurred earlier in the log.
>>>>>> Can you upload the full install log somewhere?
>>>>>>
>>>>>> FWIW, I successfully built yt-3 from the install script on OSX 10.9
>>>>>> the last time we updated the dependencies.
>>>>>>
>>>>>> Nathan
>>>>>>
>>>>>>
>>>>>> On Wednesday, September 24, 2014, David Collins <
>>>>>> dcollins4096 at gmail.com> wrote:
>>>>>>
>>>>>>> Hi, Everybody--
>>>>>>>
>>>>>>> I have a potentially dumb question.  I'm installing yt3.0 (a fresh
>>>>>>> install) on osx 10.9, and I get the following error.  It looks like the
>>>>>>> error is coming from the hg clone, for some reason the newly installed
>>>>>>> python can't find SSL.  I can use another install of hg on this machine
>>>>>>> just fine.  Has anyone else seen this, and do you know if there's an easy
>>>>>>> fix?
>>>>>>>
>>>>>>> Thanks!
>>>>>>> d.
>>>>>>>
>>>>>>> Using curl
>>>>>>> Using shasum -a 512
>>>>>>> Cloning yt
>>>>>>> Setting YT_DIR=/Users/dcollins/local-2014-09-23-yt3/src/yt-hg/
>>>>>>> Installing distribute
>>>>>>> ********************************************
>>>>>>>         FAILURE REPORT:
>>>>>>> ********************************************
>>>>>>>
>>>>>>> abort: repository /Users/dcollins/local-2014-09-23-yt3/src/yt-hg/
>>>>>>> not found!
>>>>>>> /Users/dcollins/local-2014-09-23-yt3/bin/python2.7: can't open file
>>>>>>> '/Users/dcollins/local-2014-09-23-yt3/src/yt-hg//distribute_setup.py':
>>>>>>> [Errno 2] No such file or directory
>>>>>>> using https://bitbucket.org/yt_analysis/yt-supplemental/
>>>>>>> sending capabilities command
>>>>>>> abort: Python SSL support not found
>>>>>>> using https://bitbucket.org/yt_analysis/yt/
>>>>>>> sending capabilities command
>>>>>>> abort: Python SSL support not found
>>>>>>> abort: repository /Users/dcollins/local-2014-09-23-yt3/src/yt-hg/
>>>>>>> not found!
>>>>>>> /Users/dcollins/local-2014-09-23-yt3/bin/python2.7: can't open file
>>>>>>> '/Users/dcollins/local-2014-09-23-yt3/src/yt-hg//distribute_setup.py':
>>>>>>> [Errno 2] No such file or directory
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> -- Sent from a computer.
>>>>>>>
>>>>>>
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