[yt-users] Python SSL failure, yt3, osx

David Collins dcollins4096 at gmail.com
Wed Sep 24 12:05:22 PDT 2014 

I think that Jeff's fix worked.  I've made a PR (I can withdraw it if Jeff
would rather spearhead the PR)

I did the PR on the default (stable) head, should I do it on the dev tip as
well?

d.

On Wed, Sep 24, 2014 at 2:48 PM, Chris Malone <chris.m.malone at gmail.com>
wrote:

> I take back what I said before.  I also had issues with SSL because I'm
> behind a proxy and for some reason the proxy environment variables weren't
> being honored.  I think reinstalling OpenSSL didn't fix the issue for me.
>
> What I did change, however, was making mercurial use SSH instead of HTTPS
> to clone the yt repo - and that seemed to work.  I changed these two lines
> from '...clone https://bitbucket...' to 'clone ssh://hg@bitbucket...'
>
> https://bitbucket.org/yt_analysis/yt/src/4cf5c5369df9b012759ab979330d8e356d1b0e00/doc/install_script.sh?at=yt#cl-832
>
> https://bitbucket.org/yt_analysis/yt/src/4cf5c5369df9b012759ab979330d8e356d1b0e00/doc/install_script.sh?at=yt#cl-836
>
> That said, Jeff's suggestion is probably a better fix, at least for
> something that should get pushed back to the install script.
>
> On Wed, Sep 24, 2014 at 11:55 AM, Nathan Goldbaum <nathan12343 at gmail.com>
> wrote:
>
>> Shoot, unfortunately the OSX machines I have access to are on 10.8, so I
>> can't reproduce this or debug it here.
>>
>> If Jeff's suggestion works, we'd very much appreciate getting a pull
>> request with the fixes.
>>
>> On Wed, Sep 24, 2014 at 10:47 AM, j s oishi <jsoishi at gmail.com> wrote:
>>
>>> Hi David,
>>>
>>> I added PY_CFLAGS and dumped it here:
>>>
>>> ( ./configure --prefix=${DEST_DIR}/ ${PYCONF_ARGS} CFLAGS=${PY_CFLAGS} 2>&1 ) 1>> ${LOG_FILE} || do_exit
>>>
>>>
>>> yt builds python on this line,
>>>
>>>
>>> https://bitbucket.org/yt_analysis/yt/src/4cf5c5369df9b012759ab979330d8e356d1b0e00/doc/install_script.sh?at=yt#cl-793
>>>
>>> and you should be able to do the exact same trick...I'd do it, but I
>>> don't have a mac to test it on.
>>>
>>> j
>>>
>>> On Wed, Sep 24, 2014 at 1:40 PM, David Collins <dcollins4096 at gmail.com>
>>> wrote:
>>>
>>>>
>>>> Thanks a ton for the input.
>>>>
>>>> Nathan:  I've put the full log here:
>>>> http://nazare.physics.fsu.edu/yt_install.log.  I re-pasted the last
>>>> bunch of lines below, what I pasted before was from my n-th attempt, so was
>>>> flawed.  The prior \aleph_0 lines were seemingly successful byt-compiling
>>>> statments about mercurial.
>>>>
>>>> Jeff-- What's the yt analog of the deadalus PY_CFLAGS?  I looked in the
>>>> script but didn't see a similar flag.
>>>>
>>>> The odd bit with this is that I did this successfully once a year ago
>>>> on the same machine.  I think the successful install was _before_ I
>>>> installed homebrew.
>>>>
>>>> Do you think it broke with the heartblead security patch?  (Or, the
>>>> fact that I"m on an earlier openssl?)  Does the homebrew re-install of
>>>> openssl take care of the problem, or is doing it from source necessary?
>>>>
>>>> d.
>>>>
>>>> byte-compiling
>>>> /Users/dcollins/local-2014-09-23-yt3/lib/python2.7/site-packages/mercurial/worker.py
>>>> to worker.pyc
>>>> running install_scripts
>>>> copying build/scripts-2.7/hg -> /Users/dcollins/local-2014-09-23-yt3/bin
>>>> changing mode of /Users/dcollins/local-2014-09-23-yt3/bin/hg to 755
>>>> running install_egg_info
>>>> Writing
>>>> /Users/dcollins/local-2014-09-23-yt3/lib/python2.7/site-packages/mercurial-3.1-py2.7.egg-info
>>>> using https://bitbucket.org/yt_analysis/yt-supplemental/
>>>> sending capabilities command
>>>> abort: Python SSL support not found
>>>> using https://bitbucket.org/yt_analysis/yt/
>>>> sending capabilities command
>>>> abort: Python SSL support not found
>>>> abort: repository /Users/dcollins/local-2014-09-23-yt3/src/yt-hg/ not
>>>> found!
>>>> /Users/dcollins/local-2014-09-23-yt3/bin/python2.7: can't open file
>>>> '/Users/dcollins/local-2014-09-23-yt3/src/yt-hg//distribute_setup.py':
>>>> [Errno 2] No such file or directory
>>>>
>>>>
>>>> On Wed, Sep 24, 2014 at 12:58 PM, Chris Malone <
>>>> chris.m.malone at gmail.com> wrote:
>>>>
>>>>> I had the same issue, even with homebrew.  I solved it by doing what
>>>>> Fernando mentioned - reinstall openssl.
>>>>>
>>>>> On Wed, Sep 24, 2014 at 10:53 AM, Fernando Becerra <
>>>>> becerrafernando at gmail.com> wrote:
>>>>>
>>>>>> I had the same issue a few days ago when I tried to install yt using
>>>>>> the install script on a brand new macbook pro with OSX 10.9. I ended up
>>>>>> reinstalling the openssl libraries from source and that worked for me.
>>>>>>
>>>>>> Fernando.
>>>>>>
>>>>>> On Sep 24, 2014, at 12:10 PM, Nathan Goldbaum <nathan12343 at gmail.com>
>>>>>> wrote:
>>>>>>
>>>>>> Hmm, interesting. I have access to a home brew-less Mac mini at the
>>>>>> office, so I can test this out later today and try to reproduce and figure
>>>>>> out a fix.
>>>>>>
>>>>>> On Wednesday, September 24, 2014, j s oishi <jsoishi at gmail.com>
>>>>>> wrote:
>>>>>>
>>>>>>> Hi Nathan,
>>>>>>>
>>>>>>> Any chance you had homebrew on that machine? We've been finding this
>>>>>>> issue when homebrew is not installed. 10.9 seems to have moved the location
>>>>>>> of the ssl headers, so python just doesn't build _ssl, and a whole bunch of
>>>>>>> things that depend on it fail. When homebrew is installed, it does
>>>>>>> something or other to help the python build find ssl. I have no idea what
>>>>>>> that might be; this is pure cowboy science on my part.
>>>>>>>
>>>>>>> j
>>>>>>>
>>>>>>> On Wed, Sep 24, 2014 at 12:01 PM, Nathan Goldbaum <
>>>>>>> nathan12343 at gmail.com> wrote:
>>>>>>>
>>>>>>>> Hi Dave,
>>>>>>>>
>>>>>>>> I think the original error might have occurred earlier in the log.
>>>>>>>> Can you upload the full install log somewhere?
>>>>>>>>
>>>>>>>> FWIW, I successfully built yt-3 from the install script on OSX 10.9
>>>>>>>> the last time we updated the dependencies.
>>>>>>>>
>>>>>>>> Nathan
>>>>>>>>
>>>>>>>>
>>>>>>>> On Wednesday, September 24, 2014, David Collins <
>>>>>>>> dcollins4096 at gmail.com> wrote:
>>>>>>>>
>>>>>>>>> Hi, Everybody--
>>>>>>>>>
>>>>>>>>> I have a potentially dumb question.  I'm installing yt3.0 (a fresh
>>>>>>>>> install) on osx 10.9, and I get the following error.  It looks like the
>>>>>>>>> error is coming from the hg clone, for some reason the newly installed
>>>>>>>>> python can't find SSL.  I can use another install of hg on this machine
>>>>>>>>> just fine.  Has anyone else seen this, and do you know if there's an easy
>>>>>>>>> fix?
>>>>>>>>>
>>>>>>>>> Thanks!
>>>>>>>>> d.
>>>>>>>>>
>>>>>>>>> Using curl
>>>>>>>>> Using shasum -a 512
>>>>>>>>> Cloning yt
>>>>>>>>> Setting YT_DIR=/Users/dcollins/local-2014-09-23-yt3/src/yt-hg/
>>>>>>>>> Installing distribute
>>>>>>>>> ********************************************
>>>>>>>>>         FAILURE REPORT:
>>>>>>>>> ********************************************
>>>>>>>>>
>>>>>>>>> abort: repository /Users/dcollins/local-2014-09-23-yt3/src/yt-hg/
>>>>>>>>> not found!
>>>>>>>>> /Users/dcollins/local-2014-09-23-yt3/bin/python2.7: can't open
>>>>>>>>> file '/Users/dcollins/local-2014-09-23-yt3/src/yt-hg//distribute_setup.py':
>>>>>>>>> [Errno 2] No such file or directory
>>>>>>>>> using https://bitbucket.org/yt_analysis/yt-supplemental/
>>>>>>>>> sending capabilities command
>>>>>>>>> abort: Python SSL support not found
>>>>>>>>> using https://bitbucket.org/yt_analysis/yt/
>>>>>>>>> sending capabilities command
>>>>>>>>> abort: Python SSL support not found
>>>>>>>>> abort: repository /Users/dcollins/local-2014-09-23-yt3/src/yt-hg/
>>>>>>>>> not found!
>>>>>>>>> /Users/dcollins/local-2014-09-23-yt3/bin/python2.7: can't open
>>>>>>>>> file '/Users/dcollins/local-2014-09-23-yt3/src/yt-hg//distribute_setup.py':
>>>>>>>>> [Errno 2] No such file or directory
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>> -- Sent from a computer.
>>>>>>>>>
>>>>>>>>
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