[yt-users] Fwd: [FLASH-USERS] VisIt 2.7.2 and FLASH 4.2.2

John ZuHone jzuhone at gmail.com
Mon Nov 24 06:03:54 PST 2014


Hi yt'ers,

Ivo Seitenzahl, a fellow FLASHer and former UChicago colleague, is having trouble with the install script on a HPC system. His issue is copied below. 

It keeps picking up the Intel compilers, even though he specifies the GNU compiler modules to be loaded. At the moment, I've suggested he set CC=gcc and CXX=g++, but I thought I would copy over here to see if anyone else has any ideas.

Best,

John

> From: Ivo Seitenzahl <ivo.seitenzahl at anu.edu.au>
> Date: November 23, 2014 at 10:54:09 PM EST
> To: John ZuHone <jzuhone at space.mit.edu>
> Subject: Re: [FLASH-USERS] VisIt 2.7.2 and FLASH 4.2.2
> 
> Hi John,
> so, no luck. I'm trying to do this on raijin. 
> 
> http://nci.org.au/nci-systems/national-facility/peak-system/raijin/
> 
> After logging in, the following modules are loaded.
> 
> [irs120 at raijin2 ~]$ module list
> Currently Loaded Modulefiles:
>   1) pbs                   4) openmpi/1.6.3         7) hdf5/1.8.10
>   2) intel-fc/12.1.9.293   5) dot
>   3) intel-cc/12.1.9.293   6) szip/2.1
> 
> So what I've done is 'module unload intel-fc' and 'module unload intel-cc' and 'module load gcc', after which I get
> 
> [irs120 at raijin2 ~]$ module list
> Currently Loaded Modulefiles:
>   1) pbs             2) openmpi/1.6.3   3) dot             4) szip/2.1        5) hdf5/1.8.10     6) gcc/system
> 
> However, for some reason, I still get the same problem (see below). It seems like that icc is still called, instead of gcc, although I only have the gcc module loaded. Any thoughts?
> 
> Thanks,
> 
> Ivo
> 
> >>>>>>>>>>>
> 
> Awesome!  Here we go.
> 
> Using wget
> Using sha512sum
> Setting YT_DIR=/home/120/irs120/yt-x86_64/src/yt-hg/
> Installing distribute
> Installing pip
> Installing numpy-1.8.2
> Installing matplotlib-1.4.0
> ********************************************
>         FAILURE REPORT:
> ********************************************
> 
> extern/qhull/qhull_a.h(106): error: expected a ";"
>   template <typename T>
>            ^
> 
> extern/qhull/qhull_a.h(115): warning #12: parsing restarts here after previous syntax error
>   void    qh_qhull(void);
>                         ^
> 
> compilation aborted for src/qhull_wrap.c (code 2)
> error: command 'icc' failed with exit status 2
> 
> ********************************************
> ********************************************
> Failure.  Check /home/120/irs120/yt-x86_64/yt_install.log.  The last 10 lines are 
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20141124/339a8045/attachment.htm>


More information about the yt-users mailing list