[yt-users] Making slices of Athena SMR data

[John ZuHone]

Hi Eve,

Is this just the 2-D K-H test simulation with SMR? If I could run it myself it would make it easier to debug. 

Best,

John

On Aug 5, 2013, at 5:28 PM, Eve Lee <elee at cita.utoronto.ca> wrote:

> Hi John,
> 
> Following is the output from yt instinfo
> 
> yt module located at:
> /home/evejlee/.local/lib/python2.7/site-packages/yt-2.6dev-py2.7-linux-x86_64.egg
> The supplemental repositories are located at:
>    /pfs/sw/yt-x86_64/src/yt-supplemental
> 
> The current version of the code is:
> 
> ---
> f936432ed45d yt
> ---
> 
> Best Regards,
> 
> Eve
> 
> On 08/05/2013 02:22 PM, John ZuHone wrote:
>> Hi Eve,
>> 
>> Sorry that you're having trouble!
>> 
>> Just wanted to check real quick before anything else--which version of yt are you using? Also, are you using the stable branch or the development branch? Support for Athena SMR exists in yt versions 2.5.3 and later.
>> 
>> Best,
>> 
>> John
>> 
>> On Aug 5, 2013, at 5:13 PM, Eve Lee <elee at cita.utoronto.ca> wrote:
>> 
>>> Hello,
>>> 
>>> I'm trying to make a slice plot of Athena MPI SMR data using TimeSeriesData, and I find that the code only make slices out of the base level and blanks out deeper level regions.
>>> 
>>> Following is how I read in the Athena vtk files:
>>> 
>>> ts = TimeSeriesData.from_filenames('id0/kh*.vtk', parallel=True)
>>> my_storage={}
>>> for sto,pf in ts.piter(storage=my_storage):
>>>   slc = SlicePlot(pf, 'z', 'Density')
>>>   slc.set_zlim('Density', 0.0, 3.0)
>>>   num = (pf.h.hierarchy_filename).split('.')[1]
>>>   slc.save('./slice/'+num)
>>> 
>>> all my vtk files are in id0, ..., idn where n=number of processors I used, and I'm only using 1 more level of refinement.
>>> 
>>> Thanks in advance!
>>> 
>>> Best Regards,
>>> 
>>> Eve
>>> 
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