[yt-users] Making slices of Athena SMR data

[Eve Lee]

Hi John,

Yes, it is. Thank you for your help.

Best Regards,

Eve

On 08/05/2013 08:29 PM, John ZuHone wrote:
> Hi Eve,
>
> Is this just the 2-D K-H test simulation with SMR? If I could run it myself it would make it easier to debug.
>
> Best,
>
> John
>
> On Aug 5, 2013, at 5:28 PM, Eve Lee <elee at cita.utoronto.ca> wrote:
>
>> Hi John,
>>
>> Following is the output from yt instinfo
>>
>> yt module located at:
>> /home/evejlee/.local/lib/python2.7/site-packages/yt-2.6dev-py2.7-linux-x86_64.egg
>> The supplemental repositories are located at:
>>     /pfs/sw/yt-x86_64/src/yt-supplemental
>>
>> The current version of the code is:
>>
>> ---
>> f936432ed45d yt
>> ---
>>
>> Best Regards,
>>
>> Eve
>>
>> On 08/05/2013 02:22 PM, John ZuHone wrote:
>>> Hi Eve,
>>>
>>> Sorry that you're having trouble!
>>>
>>> Just wanted to check real quick before anything else--which version of yt are you using? Also, are you using the stable branch or the development branch? Support for Athena SMR exists in yt versions 2.5.3 and later.
>>>
>>> Best,
>>>
>>> John
>>>
>>> On Aug 5, 2013, at 5:13 PM, Eve Lee <elee at cita.utoronto.ca> wrote:
>>>
>>>> Hello,
>>>>
>>>> I'm trying to make a slice plot of Athena MPI SMR data using TimeSeriesData, and I find that the code only make slices out of the base level and blanks out deeper level regions.
>>>>
>>>> Following is how I read in the Athena vtk files:
>>>>
>>>> ts = TimeSeriesData.from_filenames('id0/kh*.vtk', parallel=True)
>>>> my_storage={}
>>>> for sto,pf in ts.piter(storage=my_storage):
>>>>    slc = SlicePlot(pf, 'z', 'Density')
>>>>    slc.set_zlim('Density', 0.0, 3.0)
>>>>    num = (pf.h.hierarchy_filename).split('.')[1]
>>>>    slc.save('./slice/'+num)
>>>>
>>>> all my vtk files are in id0, ..., idn where n=number of processors I used, and I'm only using 1 more level of refinement.
>>>>
>>>> Thanks in advance!
>>>>
>>>> Best Regards,
>>>>
>>>> Eve
>>>>
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