[yt-users] Making slices of Athena SMR data

[Eve Lee]

Hi John,

Following is the output from yt instinfo

yt module located at:
/home/evejlee/.local/lib/python2.7/site-packages/yt-2.6dev-py2.7-linux-x86_64.egg
The supplemental repositories are located at:
     /pfs/sw/yt-x86_64/src/yt-supplemental

The current version of the code is:

---
f936432ed45d yt
---

Best Regards,

Eve

On 08/05/2013 02:22 PM, John ZuHone wrote:
> Hi Eve,
>
> Sorry that you're having trouble!
>
> Just wanted to check real quick before anything else--which version of yt are you using? Also, are you using the stable branch or the development branch? Support for Athena SMR exists in yt versions 2.5.3 and later.
>
> Best,
>
> John
>
> On Aug 5, 2013, at 5:13 PM, Eve Lee <elee at cita.utoronto.ca> wrote:
>
>> Hello,
>>
>> I'm trying to make a slice plot of Athena MPI SMR data using TimeSeriesData, and I find that the code only make slices out of the base level and blanks out deeper level regions.
>>
>> Following is how I read in the Athena vtk files:
>>
>> ts = TimeSeriesData.from_filenames('id0/kh*.vtk', parallel=True)
>> my_storage={}
>> for sto,pf in ts.piter(storage=my_storage):
>>    slc = SlicePlot(pf, 'z', 'Density')
>>    slc.set_zlim('Density', 0.0, 3.0)
>>    num = (pf.h.hierarchy_filename).split('.')[1]
>>    slc.save('./slice/'+num)
>>
>> all my vtk files are in id0, ..., idn where n=number of processors I used, and I'm only using 1 more level of refinement.
>>
>> Thanks in advance!
>>
>> Best Regards,
>>
>> Eve
>>
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