[yt-users] Problem with Orion data

[Andrew Myers]

Hi Matt,

Thanks. That works beautifully now.

Andrew

On Wed, Jan 25, 2012 at 8:34 AM, Matthew Turk <matthewturk at gmail.com> wrote:

> Hi Andrew,
>
> Okay, this looks like there was a non-standard, uncommented line in
> the inputs file.  (This didn't show up with the test data you passed
> me earlier, which isn't too surprising!)  I've pushed a new one to my
> repo:
>
> hg pull -r tip http://bitbucket.org/MatthewTurk/yt/
> hg up
>
> Should get it.  What this will do is simply skip over any unrecognized
> lines, but send an error about them.
>
> -Matt
>
> On Wed, Jan 25, 2012 at 10:29 AM, Andrew Myers <atmyers at berkeley.edu>
> wrote:
> > Hi Matt,
> >
> > Thanks. I'm now getting a different (and earlier) error, on the step
> where I
> > try to load the parameter file.
> >
> > -Andrew
> >
> >
> > On Wed, Jan 25, 2012 at 8:19 AM, Matthew Turk <matthewturk at gmail.com>
> wrote:
> >>
> >> Hi Andrew,
> >>
> >> Thanks for the bug report; how embarrassing.
> >>
> >> I have pushed a fix to my repository; it only touches Orion.  Casey
> >> and I are fixing up some other issues in the Nyx frontend before that
> >> gets finished up.  I am inclined to leave Maestro and Castro and
> >> attempt to unify Boxlib readers rather than salve this wound.
> >>
> >> This week the workshop is taking a bit of time, but early next week I
> >> will take a look at the (admittedly confusing) hierarchy and frontend
> >> code and see if I can codify this.  The changes to field detection
> >> resulted in this.
> >>
> >> Could you please test it by doing:
> >>
> >> hg pull -r 736067d72401 http://bitbucket.org/MatthewTurk/yt
> >> hg up
> >>
> >> and then re-running your script?
> >>
> >> This also includes changes to the FLASH stuff, and I'm waiting on the
> >> integration tests to run before I am willing to push it to the main
> >> repository.  Could you let me know if it works for Orion?
> >>
> >> -Matt
> >>
> >> On Wed, Jan 25, 2012 at 12:01 AM, Andrew Myers <atmyers at berkeley.edu>
> >> wrote:
> >> > Hello All,
> >> >
> >> > It looks like there is a problem with the current stable version of yt
> >> > that
> >> > comes up when creating a PlotCollection using Orion datasets. See the
> >> > script
> >> > here and the traceback here.
> >> >
> >> > I think the fix is that there needs to be the line
> >> >
> >> > self.field_info = pf.field_info
> >> >
> >> > somewhere in the constructor for OrionHierarchy (around line 120 of
> >> > yt/frontends/orion/data_structures.py). It looks like a line like this
> >> > used
> >> > to be here, but was removed during some code cleanup. If the other
> Orion
> >> > users are anything like me, they haven't updated yt in a while and
> thus
> >> > haven't noticed the problem.
> >> >
> >> > Glancing at the Nyx, Maestro, and Castro frontends, those look like
> they
> >> > might suffer from the same issue, but I don't have any of their data
> to
> >> > confirm or deny this.
> >> >
> >> > -Andrew Myers
> >> >
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