[yt-users] Problem with Orion data

Matthew Turk matthewturk at gmail.com
Wed Jan 25 09:40:26 PST 2012


Ah, great to hear.  I will continue with integration tests and push it
when it's been verified.  (I am a bit skittish about doing this during
the workshop, so being extra careful.)

On Wed, Jan 25, 2012 at 11:37 AM, Andrew Myers <atmyers at berkeley.edu> wrote:
> Hi Matt,
>
> Thanks. That works beautifully now.
>
> Andrew
>
>
> On Wed, Jan 25, 2012 at 8:34 AM, Matthew Turk <matthewturk at gmail.com> wrote:
>>
>> Hi Andrew,
>>
>> Okay, this looks like there was a non-standard, uncommented line in
>> the inputs file.  (This didn't show up with the test data you passed
>> me earlier, which isn't too surprising!)  I've pushed a new one to my
>> repo:
>>
>> hg pull -r tip http://bitbucket.org/MatthewTurk/yt/
>> hg up
>>
>> Should get it.  What this will do is simply skip over any unrecognized
>> lines, but send an error about them.
>>
>> -Matt
>>
>> On Wed, Jan 25, 2012 at 10:29 AM, Andrew Myers <atmyers at berkeley.edu>
>> wrote:
>> > Hi Matt,
>> >
>> > Thanks. I'm now getting a different (and earlier) error, on the step
>> > where I
>> > try to load the parameter file.
>> >
>> > -Andrew
>> >
>> >
>> > On Wed, Jan 25, 2012 at 8:19 AM, Matthew Turk <matthewturk at gmail.com>
>> > wrote:
>> >>
>> >> Hi Andrew,
>> >>
>> >> Thanks for the bug report; how embarrassing.
>> >>
>> >> I have pushed a fix to my repository; it only touches Orion.  Casey
>> >> and I are fixing up some other issues in the Nyx frontend before that
>> >> gets finished up.  I am inclined to leave Maestro and Castro and
>> >> attempt to unify Boxlib readers rather than salve this wound.
>> >>
>> >> This week the workshop is taking a bit of time, but early next week I
>> >> will take a look at the (admittedly confusing) hierarchy and frontend
>> >> code and see if I can codify this.  The changes to field detection
>> >> resulted in this.
>> >>
>> >> Could you please test it by doing:
>> >>
>> >> hg pull -r 736067d72401 http://bitbucket.org/MatthewTurk/yt
>> >> hg up
>> >>
>> >> and then re-running your script?
>> >>
>> >> This also includes changes to the FLASH stuff, and I'm waiting on the
>> >> integration tests to run before I am willing to push it to the main
>> >> repository.  Could you let me know if it works for Orion?
>> >>
>> >> -Matt
>> >>
>> >> On Wed, Jan 25, 2012 at 12:01 AM, Andrew Myers <atmyers at berkeley.edu>
>> >> wrote:
>> >> > Hello All,
>> >> >
>> >> > It looks like there is a problem with the current stable version of
>> >> > yt
>> >> > that
>> >> > comes up when creating a PlotCollection using Orion datasets. See the
>> >> > script
>> >> > here and the traceback here.
>> >> >
>> >> > I think the fix is that there needs to be the line
>> >> >
>> >> > self.field_info = pf.field_info
>> >> >
>> >> > somewhere in the constructor for OrionHierarchy (around line 120 of
>> >> > yt/frontends/orion/data_structures.py). It looks like a line like
>> >> > this
>> >> > used
>> >> > to be here, but was removed during some code cleanup. If the other
>> >> > Orion
>> >> > users are anything like me, they haven't updated yt in a while and
>> >> > thus
>> >> > haven't noticed the problem.
>> >> >
>> >> > Glancing at the Nyx, Maestro, and Castro frontends, those look like
>> >> > they
>> >> > might suffer from the same issue, but I don't have any of their data
>> >> > to
>> >> > confirm or deny this.
>> >> >
>> >> > -Andrew Myers
>> >> >
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