[yt-dev] Call for testing: updated install script

Thu Apr 14 12:07:19 PDT 2016

On Thu, Apr 14, 2016 at 1:58 PM, Reju Sam John <rejusamjohn at gmail.com>
wrote:

> Hi
> I am getting the following error
>
> Setting YT_DIR=/data1/visitor/creju/yt_test/yt-x86_64/src/yt-hg/
> Installing pip
> ********************************************
>         FAILURE REPORT:
> ********************************************
>
> updating: yt/utilities/initial_conditions.py 1059/1210 files (87.52%)
> updating: yt/frontends/eagle/setup.py 1097/1210 files (90.66%)
> updating: yt/frontends/tipsy/data_structures.py 1135/1210 files (93.80%)
> updating: yt/frontends/rockstar/fields.py 1173/1210 files (96.94%)
> updating: yt/visualization/volume_rendering/transfer_functions.py
> 1210/1210 files (100.00%)
> 1210 files updated, 0 files merged, 0 files removed, 0 files unresolved
> 689 files updated, 0 files merged, 252 files removed, 0 files unresolved
> (leaving bookmark @)
> ERROR: certificate common name `*.c.ssl.fastly.net' doesn't match
> requested host name `bootstrap.pypa.io'.
> To connect to bootstrap.pypa.io insecurely, use `--no-check-certificate'.
>
> in the following system
>
> LSB Version:
> :core-4.0-amd64:core-4.0-noarch:graphics-4.0-amd64:graphics-4.0-noarch:printing-4.0-amd64:printing-4.0-noarch
> Distributor ID: RedHatEnterpriseServer
> Description:    Red Hat Enterprise Linux Server release 6.2 (Santiago)
> Release:        6.2
> Codename:       Santiago
>
>
Yes, this is a known issue with the version of wget shipped on that version
of CentOS:

https://docs.fastly.com/guides/debugging/tls-certificate-errors#errors-when-using-wget

>
>
>
> On Thu, Apr 14, 2016 at 11:36 PM, Hsi-Yu Schive <hyschive at ntu.edu.tw>
> wrote:
>
>> The installation with conda works fine on the Campus cluster. Great!
>>
>> Justin
>>
>> 2016-04-14 10:12 GMT-05:00 Nathan Goldbaum <nathan12343 at gmail.com>:
>>
>>>
>>>
>>> On Thu, Apr 14, 2016 at 8:44 AM, John Zuhone <jzuhone at gmail.com> wrote:
>>>
>>>> Hi Nathan,
>>>>
>>>> On El Capitan, running the install script with the default options, I
>>>> get this:
>>>>
>>>> ========================================================================
>>>>
>>>> Hi there!  This is the yt installation script.  We're going to download
>>>> some stuff and install it to create a self-contained, isolated
>>>> environment for yt to run within.
>>>>
>>>> Inside the installation script you can set a few variables.  Here's what
>>>> they're currently set to -- you can hit Ctrl-C and edit the values in
>>>> the script if you aren't such a fan.
>>>>
>>>> INST_PY3           = 0 so I won't be installing Python 3
>>>> INST_HG            = 1 so I will  be installing Mercurial
>>>> INST_UNSTRUCTURED  = 0 so I won't be installing unstructured mesh
>>>> rendering
>>>> INST_PYX           = 0 so I won't be installing PyX
>>>> INST_ROCKSTAR      = 0 so I won't be installing Rockstar
>>>> INST_H5PY          = 1 so I will  be installing h5py
>>>> INST_ASTROPY       = 0 so I won't be installing astropy
>>>> INST_NOSE          = 1 so I will  be installing nose
>>>>
>>>>
>>>> Installation will be to
>>>>   /Users/jzuhone/Source/yt-ng/doc/yt-conda
>>>>
>>>> and I'll be logging the installation in
>>>>   /Users/jzuhone/Source/yt-ng/doc/yt-conda/yt_install.log
>>>>
>>>> I think that about wraps it up.  If you want to continue, hit enter.
>>>> If you'd rather stop, maybe think things over, even grab a sandwich,
>>>> hit Ctrl-C.
>>>>
>>>> ========================================================================
>>>>
>>>> [hit enter]
>>>>
>>>> Awesome!  Here we go.
>>>>
>>>> Using wget
>>>> Using shasum -a 512
>>>>
>>>> Downloading
>>>> http://repo.continuum.io/miniconda/Miniconda2-latest-MacOSX-x86_64.sh
>>>>
>>>> Installing the Miniconda python environment.
>>>> Installing the necessary packages for yt.
>>>> This may take a while, but don't worry.  yt loves you.
>>>> ********************************************
>>>>         FAILURE REPORT:
>>>> ********************************************
>>>>
>>>> installing: pycrypto-2.6.1-py27_0 ...
>>>> installing: pip-8.1.1-py27_1 ...
>>>> installing: wheel-0.29.0-py27_0 ...
>>>> installing: setuptools-20.3-py27_0 ...
>>>> Python 2.7.11 :: Continuum Analytics, Inc.
>>>> creating default environment...
>>>> installation finished.
>>>> EXECUTING:
>>>>   conda update --yes conda
>>>> Error: package 'conda' is not installed in
>>>> /Users/jzuhone/Source/yt-ng/doc/yt-conda/envs/python2
>>>>
>>>> ********************************************
>>>> ********************************************
>>>> Failure.  Check
>>>> /Users/jzuhone/Source/yt-ng/doc/yt-conda/yt_install.log.  The last 10 lines
>>>> are above.
>>>>
>>>
>>> This should be fixed by this commit:
>>>
>>> https://bitbucket.org/ngoldbaum/yt/commits/351fd47
>>>
>>> Thanks for working this out with me on Slack.
>>>
>>>
>>>>
>>>> On Apr 13, 2016, at 11:10 AM, Nathan Goldbaum <nathan12343 at gmail.com>
>>>> wrote:
>>>>
>>>> Hi all,
>>>>
>>>> I'd appreciate it if people could try running my updated install script
>>>> on a variety of platforms. With my changes, the install script sets up a
>>>> conda environment by default, but the option to create a bootstrapped
>>>> from-source python environment is still implemented. See PR 2009 for
>>>> details:
>>>>
>>>> https://bitbucket.org/yt_analysis/yt/pull-requests/2009
>>>>
>>>> You can either grab the raw install_script.sh file from my fork:
>>>>
>>>> $ wget
>>>> https://bitbucket.org/ngoldbaum/yt/raw/install-script-updates/doc/install_script.sh
>>>>
>>>> Or pull from my fork and run the "test_install_script.py" that I've
>>>> added. The latter will take a while, because it runs the install script six
>>>> times with a variety of permutations in options.
>>>>
>>>> Thanks for your help!
>>>>
>>>> -Nathan
>>>> _______________________________________________
>>>> yt-dev mailing list
>>>> yt-dev at lists.spacepope.org
>>>> http://lists.spacepope.org/listinfo.cgi/yt-dev-spacepope.org
>>>>
>>>>
>>>>
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>>>>
>>>>
>>>
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>>
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>
>
> --
> Reju Sam John
>
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