[yt-users] How to generate ghost zones?

Nathan Goldbaum nathan12343 at gmail.com
Thu May 11 09:28:24 PDT 2017


As the error message suggests, you should either set:

ds.periodicity = (True, True, True)

or select data from a region that does not border the simulation domain.

We have long term plans to fix this, see e.g.:

https://github.com/yt-project/yt/issues/1366

Also you may want to update your mailing list settings to not use digest
mode so you don't need to wait a week to get a response from me :)

-Nathan

On Thu, May 11, 2017 at 11:14 AM, Kalina Borkiewicz <kalina at illinois.edu>
wrote:

> Hi Nathan,
>
> Thanks for getting back to me. Yes, I am looking to compute a field in the
> grid, and a ghost zone of size 1 surrounding the grid, for FLASH data,
> specifically. Your code snippet works for the IsolatedGalaxy Enzo dataset,
> but doesn't work on the GasSloshing FLASH dataset from
> http://yt-project.org/data/ . I get this error on retrieve_ghost_zones:
>
> "
> Traceback (most recent call last):
>   File "writeAMRVDB_FLASH.py", line 28, in <module>
>     gz_grid = grid.retrieve_ghost_zones(1, variable)
>   File "/i0/src/sci/yt33ana/yt-conda/src/yt-hg/yt/data_objects/grid_patch.py",
> line 250, in retrieve_ghost_zones
>     **kwargs)
>   File "/i0/src/sci/yt33ana/yt-conda/src/yt-hg/yt/data_objects/
> construction_data_containers.py", line 543, in __init__
>     self.get_data(fields)
>   File "/i0/src/sci/yt33ana/yt-conda/src/yt-hg/yt/data_objects/
> construction_data_containers.py", line 629, in get_data
>     if len(fill) > 0: self._fill_fields(fill)
>   File "/i0/src/sci/yt33ana/yt-conda/src/yt-hg/yt/data_objects/
> construction_data_containers.py", line 667, in _fill_fields
>     for chunk in self._data_source.chunks(fields, "io"):
>   File "/i0/src/sci/yt33ana/yt-conda/src/yt-hg/yt/data_objects/data_containers.py",
> line 1079, in chunks
>     self.get_data() # Ensure we have built ourselves
>   File "/i0/src/sci/yt33ana/yt-conda/src/yt-hg/yt/data_objects/data_containers.py",
> line 1113, in get_data
>     self.index._identify_base_chunk(self)
>   File "/i0/src/sci/yt33ana/yt-conda/src/yt-hg/yt/geometry/grid_geometry_handler.py",
> line 290, in _identify_base_chunk
>     gi = dobj.selector.select_grids(self.grid_left_edge,
>   File "/i0/src/sci/yt33ana/yt-conda/src/yt-hg/yt/data_objects/data_containers.py",
> line 1074, in selector
>     self._selector = sclass(self)
>   File "yt/geometry/selection_routines.pyx", line 855, in
> yt.geometry.selection_routines.RegionSelector.__init__
> (yt/geometry/selection_routines.c:16696)
> RuntimeError: Error: yt attempted to read outside the boundaries of a
> non-periodic domain along dimension 0.
> Region left edge = -4.16556e+24 code_length, Region right edge =
> 4.16556e+24 code_length
> Dataset left edge = -3.70272e+24 code_length, Dataset right edge =
> 3.70272e+24 code_length
>
> This commonly happens when trying to compute ghost cells up to the domain
> boundary. Two possible solutions are to load a smaller region that does not
> border the edge or override the periodicity for this dataset.
> "
>
>
> -Kalina
>
>
> ------------------------------
>
> Hi Kalina,
>
> We have a way of generating ghost zones using internal APIs that you may be
> able to use.
>
> What sort of ghost zone information do you need? Something like for a given
> grid patch, you want to be able to compute a field in the grid and some
> ghost zones surrounding the grid?
>
> If so, something like this should work:
>
>     import yt
>
>     # available for download at yt-project.org/data
>     ds = yt.load('IsolatedGalaxy/galaxy0030/galaxy0030')
>
>     # grab a grid object, ds.index.grids is a python list containing
>     # references to all of the grids in the simulation
>     grid = ds.index.grids[0]
>
>     gz_grid = grid.retrieve_ghost_zones(3, 'density')
>
>     print(gz_grid['density'].shape)
>
>     print(grid['density'].shape)
>
> This should print "(38, 38, 38)" and "(32, 32, 32)".
>
> Note that this will only work for patch AMR data (e.g. FLASH, Enzo, Boxlib,
> etc). Also note that the retrieve_ghost_zones function takes a "smoothed"
> keyword argument, which if set to True will use interpolation to estimate
> field values and if set to False (the default) will use nearest neighbor
> sampling.
>
> -Nathan
>
> On Wed, May 3, 2017 at 11:50 AM, Kalina Borkiewicz <kalina at illinois.edu <http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org>>
> wrote:
>
> >* I see in the yt 3.3 change log that "ghost zone generation" is a thing,
> *>* but I can't seem to find anything else about this.
> *>>* I would like to generate ghost zones for FLASH data. I tried
> *>* retrieve_ghost_zones() but that gives an error, and I can't find any other
> *>* ghost zone-related functions. Could I get some advice?
> *>>* Thanks,
> *>* Kalina*
>
>
> On 05/11/2017 10:55 AM, yt-users-request at lists.spacepope.org wrote:
>
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> Today's Topics:
>
>    1. Re: ENZO build error (Alankar Dutta)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Thu, 11 May 2017 21:24:55 +0530
> From: Alankar Dutta <dutta.alankar at gmail.com> <dutta.alankar at gmail.com>
> To: Discussion of the yt analysis package
> 	<yt-users at lists.spacepope.org> <yt-users at lists.spacepope.org>
> Subject: Re: [yt-users] ENZO build error
> Message-ID:
> 	<CA+6Z7qpeKA+zXdtWHjNe4wsf5S0aYexW8F9dGKXJsJY_C5AXVw at mail.gmail.com> <CA+6Z7qpeKA+zXdtWHjNe4wsf5S0aYexW8F9dGKXJsJY_C5AXVw at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hi David,
>
> I saw that file. Couldn't figure out what's wrong.
> I am attaching it.
>
> Alankar
>
> On Thu, May 11, 2017 at 6:28 PM, David Collins <dcollins4096 at gmail.com> <dcollins4096 at gmail.com>
> wrote:
>
>
> Hi, Alankar--
>
> In src/enzo there's a file, out.compile.  That will have your linking
> errors, look in that.  Let me know if it's not obvious what to do after you
> look there.
>
> d.
>
> On Wed, May 10, 2017 at 11:50 PM, Alankar Dutta <dutta.alankar at gmail.com> <dutta.alankar at gmail.com>
> wrote:
>
>
> Hello yt-community,
>
> I was trying to build ENZO. I downloaded yt for Python 2 compiled all
> dependent libraries and activated yt with mercurial installed. when I issue
> make, I get the following error. I am also attaching my make.mach file I
> used.
>
> Alankar
>
> Updating DEPEND
> make: [Makefile:361: dep] Error 127 (ignored)
> make: [Makefile:362: dep] Error 127 (ignored)
> make: [Makefile:363: dep] Error 127 (ignored)
> make: [Makefile:364: dep] Error 127 (ignored)
> make: [Makefile:365: dep] Error 127 (ignored)
> make: [Makefile:366: dep] Error 127 (ignored)
> make: [Makefile:367: dep] Error 127 (ignored)
> Compiling enzo.C
> Compiling MHDLoopInit.C
> Compiling Grid_MHDLoopInitGrid.C
> Compiling acml_st1.F
> Compiling AdiabaticExpansionInitialize.C
> Compiling AdjustRefineRegion.C
> Compiling AdjustMustRefineParticlesRefineToLevel.C
> Compiling AMRH5writer.C
> Compiling AnalysisBaseClass.C
> Compiling AnalysisBaseClass_HDF5Utils.C
> Compiling arccosh.C
> Compiling arcsinh.C
> Compiling AssignGridToTaskMap.C
> Compiling auto_show_compile_options.C
> Compiling auto_show_config.C
> Compiling auto_show_flags.C
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> Compiling calc_tdust_3d.F
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> Compiling ClearEmissivity.C
> Compiling CalculateSubtractionParameters.C
> Compiling CallProblemSpecificRoutines.C
> Compiling CallPython.C
> Compiling CheckEnergyConservation.C
> Compiling CheckForOutput.C
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> Compiling CommunicationCollectParticles.C
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> Compiling CoolingTestInitialize.C
> Compiling CopyParticlesAcrossPeriodicBoundaries.C
> Compiling CopyOverlappingParticleMassFields.C
> Compiling CopyOverlappingZones.C
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> Compiling CosmoIonizationInitialize.C
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> Compiling DeleteFluxes.C
> Compiling DeleteSUBlingList.C
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> Compiling ExposeDataHierarchy.C
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> Compiling ExternalBoundary_SetShockPoolBoundary.C
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> Compiling ExternalBoundary_SetWavePoolBoundary.C
> Compiling ExternalBoundary_SetWengenCollidingFlowBoundary.C
> Compiling ExternalBoundary_WriteExternalBoundary.C
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> Compiling FastFourierTransform.C
> Compiling FastFourierTransformPrepareComplex.C
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> Compiling FinalizeFluxes.C
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> Compiling FOF_sort2_flt_int.C
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> Compiling FOF_subfind.C
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> Compiling fortio.F
> Compiling fourn.F
> Compiling FreeRealMem.c
> Compiling FreeExpansionInitialize.C
> Compiling FreezeRateData.C
> Compiling FriendOfFriend.C
> Compiling FSMultiSourceInitialize.C
> Compiling FSProb_ComputeOpacityLW.C
> Compiling FSProb_constructor.C
> Compiling FSProb_destructor.C
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> Compiling FSProb_EnforceBoundary.C
> Compiling FSProb_Evolve.C
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> Compiling FSProb_Dump.C
> Compiling FSProb_InitialGuess.F90
> Compiling FSProb_SetupSystem.F90
> Compiling FSProb_WriteParameters.C
> Compiling FSProb_RadiationSource.F90
> Compiling FSProb_SetupBoundary.C
> Compiling F_ColumnFormat.C
> Compiling f_message.F
> Compiling Gadget.C
> Compiling GadgetInitCoolMemory.C
> Compiling GadgetIonizeParamsTable.C
> Compiling GadgetMakeCoolingTable.C
> Compiling GadgetReadIonizeParams.C
> Compiling GalaxySimulationInitialize.C
> Compiling GenerateGridArray.C
> Compiling GetNodeFreeMemory.C
> Compiling GetUnits.C
> Compiling gFLDProblem_AnalyticalEqns.F90
> Compiling gFLDProblem_ChemistrySource.F90
> Compiling gFLDProblem_ComputeRHS.C
> Compiling gFLDProblem_ComputeRadiationIntegrals.C
> Compiling gFLDProblem_ComputeTemperature.C
> Compiling gFLDProblem_ComputeTimeStep.C
> Compiling gFLDProblem_constructor.C
> Compiling gFLDProblem_CrossSections.C
> Compiling gFLDProblem_destructor.C
> Compiling gFLDProblem_DiffRHS.F90
> Compiling gFLDProblem_Dump.C
> Compiling gFLDProblem_EnforceBoundary.C
> Compiling gFLDProblem_Evolve.C
> Compiling gFLDProblem_FInterface.C
> Compiling gFLDProblem_GasEnergySource.F90
> Compiling gFLDProblem_InitialGuess.C
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> Compiling gFLDProblem_LocalJac.F90
> Compiling gFLDProblem_LocalRHS.F90
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> Compiling gFLDProblem_Opacity.F90
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> Compiling gFLDProblem_SetNewtonBCs.F90
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> Compiling gFLDProblem_UpdateBoundary.C
> Compiling gFLDProblem_WriteParameters.C
> Compiling gFLDSplit_AnalyticChemistry.F90
> Compiling gFLDSplit_ChemistrySource.F90
> Compiling gFLDSplit_ComputeRadiationIntegrals.C
> Compiling gFLDSplit_ComputeTemperature.C
> Compiling gFLDSplit_ComputeTimeStep.C
> Compiling gFLDSplit_constructor.C
> Compiling gFLDSplit_CrossSections.C
> Compiling gFLDSplit_destructor.C
> Compiling gFLDSplit_Dump.C
> Compiling gFLDSplit_EnforceBoundary.C
> Compiling gFLDSplit_Evolve.C
> Compiling gFLDSplit_FInterface.C
> Compiling gFLDSplit_FillRates.C
> Compiling gFLDSplit_GasEnergySource.F90
> Compiling gFLDSplit_InitialGuess.C
> Compiling gFLDSplit_Initialize.C
> Compiling gFLDSplit_Opacity.F90
> Compiling gFLDSplit_RadiationSource.F90
> Compiling gFLDSplit_RadiationSpectrum.C
> Compiling gFLDSplit_SetupBoundary.C
> Compiling gFLDSplit_SetupSystem.F90
> Compiling gFLDSplit_WriteParameters.C
> Compiling GravityEquilibriumTestInitialize.C
> Compiling Grid_AccelerationBoundaryRoutines.C
> Compiling Grid_AccessBaryonFields.C
> Compiling Grid_AddBaryonsToGravitatingMassField.C
> Compiling Grid_AddExternalAcceleration.C
> Compiling Grid_AddExternalPotentialField.C
> Compiling Grid_AddFeedbackSphere.C
> Compiling Grid_AddFieldMassToMassFlaggingField.C
> Compiling Grid_AddFields.C
> Compiling Grid_AddOneParticleFromList.C
> Compiling Grid_AddOverlappingParticleMassField.C
> Compiling Grid_AddParticlesFromList.C
> Compiling Grid_AddRandomForcing.C
> Compiling Grid_AddToBoundaryFluxes.C
> Compiling Grid_AllocateGrids.C
> Compiling Grid_AnalyzeTrackPeaks.C
> Compiling Grid_AppendForcingToBaryonFields.C
> Compiling Grid_ApplyTimeAction.C
> Compiling Grid_CalculateAngularMomentum.C
> Compiling Grid_ChangeParticleTypeBeforeSN.C
> Compiling Grid_CheckForExternalReflections.C
> Compiling Grid_CheckForOverlap.C
> Compiling Grid_CheckForPossibleOverlap.C
> Compiling Grid_CheckForSharedFace.C
> Compiling grid_cic.F
> Compiling grid_ngp.F
> Compiling Grid_CleanUpMovedParticles.C
> Compiling Grid_CleanUp.C
> Compiling Grid_ClearBoundaryFluxes.C
> Compiling Grid_ClearFlaggingField.C
> Compiling Grid_ClearGravitatingMassField.C
> Compiling Grid_ClearGravitatingMassFieldParticles.C
> Compiling Grid_ClearMassFlaggingField.C
> Compiling Grid_ClearParticleAccelerations.C
> Compiling Grid_ClearParticleMassFlaggingField.C
> Compiling Grid_ClusterInitializeGrid.C
> Compiling Grid_ClusterSMBHFeedback.C
> Compiling Grid_ClusterSMBHEachGridGasMass.C
> Compiling Grid_CollapseTestInitializeGrid.C
> Compiling Grid_CollectGridInformation.C
> Compiling Grid_CollectParticles.C
> Compiling Grid_CollectParticleMassFlaggingField.C
> Compiling Grid_CollectStars.C
> Compiling Grid_CommunicationMoveGrid.C
> Compiling Grid_CommunicationReceiveRegion.C
> Compiling Grid_CommunicationSendParticles.C
> Compiling Grid_CommunicationSendStars.C
> Compiling Grid_CommunicationSendRegion.C
> Compiling Grid_CommunicationTransferParticlesOpt.C
> Compiling Grid_CommunicationTransferStarsOpt.C
> Compiling Grid_ComovingExpansionTerms.C
> Compiling Grid_ComovingGravitySourceTerm.C
> Compiling Grid_ComputeAccelerationFieldExternal.C
> Compiling Grid_ComputeAccelerationField.C
> Compiling Grid_ComputeAccelerations.C
> Compiling Grid_ComputeAccelerationsFromExternalPotential.C
> Compiling Grid_ComputeCellCenteredField.C
> Compiling Grid_ComputeConductionTimeStep.C
> Compiling Grid_ComputeCoolingTime.C
> Compiling Grid_ComputeCRDiffusion.C
> Compiling Grid_ComputeCRDiffusionTimeStep.C
> Compiling Grid_ComputeDustTemperatureField.C
> Compiling Grid_ComputeElementalDensity.C
> Compiling Grid_ComputeEnergy.C
> Compiling Grid_ComputeExternalNohBoundary.C
> Compiling Grid_ComputeGammaField.C
> Compiling Grid_ComputeHeat.C
> Compiling Grid_ComputeLuminosity.C
> Compiling Grid_ComputeMetalLineLuminosity.C
> Compiling Grid_ComputeOneZoneCollapseFactor.C
> Compiling Grid_ComputePressure.C
> Compiling Grid_ComputeRandomForcingFields.C
> Compiling Grid_ComputeTemperatureField.C
> Compiling Grid_ComputeTimeStep.C
> Compiling Grid_ComputeVectorAnalysisFields.C
> Compiling Grid_ComputeVertexCenteredField.C
> Compiling Grid_ComputeXrayEmissivity.C
> Compiling Grid_ConductHeat.C
> Compiling Grid_ConductionBubbleInitialize.C
> Compiling Grid_ConductionCloudInitialize.C
> Compiling Grid_ConductionTestInitialize.C
> Compiling Grid_constructor.C
> Compiling Grid_ConvertTotalEnergyToGasEnergy.C
> Compiling Grid_ConvertToNumpy.C
> Compiling Grid_CoolingTestResetEnergies.C
> Compiling Grid_CoolingTestInitializeGrid.C
> Compiling Grid_CopyBaryonFieldToOldBaryonField.C
> Compiling Grid_CopyOverlappingMassField.C
> Compiling Grid_CopyParentToGravitatingFieldBoundary.C
> Compiling Grid_CopyPotentialField.C
> Compiling Grid_CopyPotentialToBaryonField.C
> Compiling Grid_CopyZonesFromGridCountOnly.C
> Compiling Grid_CopyZonesFromGrid.C
> Compiling Grid_CorrectForRefinedFluxes.C
> Compiling Grid_CosmoIonizationInitializeGrid.C
> Compiling Grid_CosmologyInitializeParticles.C
> Compiling Grid_CosmologySimulationInitializeGrid.C
> Compiling Grid_CreateChildParticles.C
> Compiling Grid_CreateFieldArray.C
> Compiling Grid_CreateParticleTypeGrouping.C
> Compiling Grid_CRShockTubesInitializeGrid.C
> Compiling Grid_DebugCheck.C
> Compiling Grid_DeleteAllButParticles.C
> Compiling Grid_DeleteAllFields.C
> Compiling Grid_DeleteBaryonFields.C
> Compiling Grid_DeleteFlaggingField.C
> Compiling Grid_DeleteObsoleteFields.C
> Compiling Grid_DepositBaryons.C
> Compiling Grid_DepositMustRefineParticles.C
> Compiling Grid_DepositParticlePositions.C
> Compiling Grid_DepositParticlePositionsLocal.C
> Compiling Grid_DepositPositions.C
> Compiling Grid_destructor.C
> Compiling Grid_DetachForcingFromBaryonFields.C
> Compiling Grid_DoubleMachInitializeGrid.C
> Compiling Grid_FastSiblingLocatorAddGrid.C
> Compiling Grid_FastSiblingLocatorFindSiblings.C
> Compiling Grid_FindAllStarParticles.C
> Compiling Grid_FindMassiveParticles.C
> Compiling Grid_FindMinimumParticleMass.C
> Compiling Grid_FindNewStarParticles.C
> Compiling Grid_FindShocks.C
> Compiling Grid_FinishFFT.C
> Compiling Grid_FlagBufferZones.C
> Compiling Grid_FlagCellsToAvoidRefinement.C
> Compiling Grid_FlagCellsToAvoidRefinementRegion.C
> Compiling Grid_FlagCellsToBeRefinedByCoolingTime.C
> Compiling Grid_FlagCellsToBeRefinedByJeansLength.C
> Compiling Grid_FlagCellsToBeRefinedByTotalJeansLength.C
> Compiling Grid_FlagCellsToBeRefinedByMass.C
> Compiling Grid_FlagCellsToBeRefinedByMetallicity.C
> Compiling Grid_FlagCellsToBeRefinedByMetalMass.C
> Compiling Grid_FlagCellsToBeRefinedByMustRefineRegion.C
> Compiling Grid_FlagCellsToBeRefinedByResistiveLength.C
> Compiling Grid_FlagCellsToBeRefinedByShear.C
> Compiling Grid_FlagCellsToBeRefinedByShocks.C
> Compiling Grid_FlagCellsToBeRefinedByShockwaves.C
> Compiling Grid_FlagCellsToBeRefinedBySlope.C
> Compiling Grid_FlagCellsToBeRefinedBySecondDerivative.C
> Compiling Grid_FlagRefinedCells.C
> Compiling Grid_FlagGridArray.C
> Compiling Grid_FreeExpansionInitializeGrid.C
> Compiling Grid_FSMultiSourceInitializeGrid.C
> Compiling Grid_GadgetCalculateCooling.C
> Compiling Grid_GadgetComputeTemperatureDEF.C
> Compiling Grid_GadgetComputeTemperature.C
> Compiling Grid_Gadgetconvertutotemp.C
> Compiling Grid_GadgetCoolingRate.C
> Compiling Grid_GadgetCoolingRateFromU.C
> Compiling Grid_GadgetCoolingTime.C
> Compiling Grid_Gadgetfindabundancesandrates.C
> Compiling Grid_GadgetEquilibriumCooling.C
> Compiling Grid_GalaxySimulationInitializeGrid.C
> Compiling Grid_GetEnclosedMass.C
> Compiling Grid_GetEnclosedMassInShell.C
> Compiling Grid_GetProjectedBoundaryFluxes.C
> Compiling Grid_GrackleWrapper.C
> Compiling Grid_GravityEquilibriumTestInitializeGrid.C
> Compiling Grid_Group_WriteGridInterpolate.C
> Compiling Grid_Group_WriteGrid.C
> Compiling Grid_Group_ReadGrid.C
> Compiling New_Grid_WriteGrid.C
> Compiling New_Grid_ReadGrid.C
> Compiling Grid_IdentifyColourFields.C
> Compiling Grid_HydroShockTubesInitializeGrid.C
> Compiling Grid_IdentifyShockSpeciesFields.C
> Compiling Grid_IdentifyGloverSpeciesFields.C
> Compiling Grid_IdentifyNewSubgrids.C
> Compiling Grid_IdentifyNewSubgridsSmall.C
> Compiling Grid_IdentifyPhysicalQuantities.C
> Compiling Grid_IdentifyRadiativeTransferFields.C
> Compiling Grid_IdentifySpeciesFields.C
> Compiling Grid_ImplosionInitializeGrid.C
> Compiling Grid_InheritProperties.C
> Compiling Grid_InitializeGravitatingMassField.C
> Compiling Grid_InitializeGravitatingMassFieldParticles.C
> Compiling Grid_InitializeUniformGrid.C
> Compiling Grid_InterpolateAccelerations.C
> Compiling Grid_InterpolateBoundaryFromParent.C
> Compiling Grid_InterpolateFieldValues.C
> Compiling Grid_InterpolateParticlePositions.C
> Compiling Grid_InterpolateParticlesToGrid.C
> Compiling Grid_InterpolatePositions.C
> Compiling Grid_InterpolateStarParticlesToGrid.C
> Compiling Grid_KHInitializeGrid.C
> Compiling Grid_KHInitializeGridRamp.C
> Compiling Grid_MagneticFieldResetter.C
> Compiling Grid_MirrorStarParticles.C
> Compiling Grid_MoveAllParticles.C
> Compiling Grid_MoveAllStars.C
> Compiling Grid_MoveParticlesFOF.C
> Compiling Grid_MoveSubgridParticlesFast.C
> Compiling Grid_MoveSubgridParticles.C
> Compiling Grid_MoveSubgridStars.C
> Compiling Grid_MultiSpeciesHandler.C
> Compiling Grid_MustRefineParticlesFlagFromList.C
> Compiling Grid_MustRefineParticlesFlagInRegion.C
> Compiling Grid_NestedCosmologySimulationInitializeGrid.C
> Compiling Grid_NohInitializeGrid.C
> Compiling Grid_OneZoneFreefallTestInitializeGrid.C
> Compiling Grid_OutputAsParticleData.C
> Compiling Grid_OutputStarParticleInformation.C
> Compiling Grid_ParticleSplitter.C
> Compiling Grid_PoissonSolver.C
> Compiling Grid_PoissonSolverCGA.C
> Compiling Grid_PoissonSolverTestInitializeGrid.C
> Compiling Grid_PrepareBoundaryFluxes.C
> Compiling Grid_PrepareFFT.C
> Compiling Grid_PrepareGreensFunction.C
> Compiling Grid_PrepareGridDerivedQuantities.C
> Compiling Grid_PrepareGrid.C
> Compiling Grid_PreparePeriodicGreensFunction.C
> Compiling Grid_PreparePotentialField.C
> Compiling Grid_PrepareRandomForcingNormalization.C
> Compiling Grid_PressurelessCollapseInitialize.C
> Compiling Grid_ProjectSolutionToParentGrid.C
> Compiling Grid_ProjectToPlane.C
> Compiling Grid_ProjectToPlane2.C
> Compiling Grid_ProtostellarCollapseInitializeGrid.C
> Compiling Grid_PutSinkRestartInitialize.C
> Compiling Grid_RadHydroConstTestInitializeGrid.C
> Compiling Grid_RadHydroGreyMarshakWaveInitializeGrid.C
> Compiling Grid_RadHydroPulseTestInitializeGrid.C
> Compiling Grid_RadHydroRadShockInitializeGrid.C
> Compiling Grid_RadHydroStreamTestInitializeGrid.C
> Compiling Grid_RadiationComputeDensities.C
> Compiling Grid_RadiatingShockInitializeGrid.C
> Compiling Grid_ReadGrid.C
> Compiling Grid_CosmologyReadParticles3D.C
> Compiling Grid_ReadHierarchyInformationHDF5.C
> Compiling Grid_ReadRandomForcingFields.C
> Compiling Grid_RemoveForcingFromBaryonFields.C
> Compiling Grid_RemoveParticle.C
> Compiling Grid_RestoreEnergyConsistency.C
> Compiling Grid_ReturnFluxDims.C
> Compiling Grid_ReturnGridInfo.C
> Compiling Grid_ReturnNumberOfStarParticles.C
> Compiling Grid_ReturnParticleEntry.C
> Compiling Grid_ReturnStarStatistics.C
> Compiling Grid_RHIonizationClumpInitializeGrid.C
> Compiling Grid_RHIonizationSteepInitializeGrid.C
> Compiling Grid_RHIonizationTestInitializeGrid.C
> Compiling Grid_RotatingCylinderInitialize.C
> Compiling Grid_RotatingDiskInitializeGrid.C
> Compiling Grid_RotatingSphereInitialize.C
> Compiling Grid_SedovBlastInitializeGrid.C
> Compiling Grid_SedovBlastInitializeGrid3D.C
> Compiling Grid_SetExternalBoundaryValues.C
> Compiling Grid_SetFlaggingField.C
> Compiling Grid_SetFlaggingFieldMultiRefineRegions.C
> Compiling Grid_SetFlaggingFieldStaticRegions.C
> Compiling Grid_SetIsolatedPotentialBoundary.C
> Compiling Grid_SetMinimumSupport.C
> Compiling Grid_SetNewParticleIndex.C
> Compiling Grid_SetParticleMassFlaggingField.C
> Compiling Grid_ShearingBoxInitializeGrid.C
> Compiling Grid_ShearingBox2DInitializeGrid.C
> Compiling Grid_ShearingBoxStratifiedInitializeGrid.C
> Compiling Grid_ShocksHandler.C
> Compiling Grid_SolveForPotential.C
> Compiling Grid_SolveHydroEquations.C
> Compiling Grid_SolveOneZoneFreefall.C
> Compiling Grid_SolveMHD_Li.C
> Compiling Grid_SolvePPM_DE.C
> Compiling Grid_SolveRadiativeCooling.C
> Compiling Grid_SolveRateAndCoolEquations.C
> Compiling Grid_SolveRateEquations.C
> Compiling Grid_SortParticlesByNumber.C
> Compiling Grid_SortParticlesByType.C
> Compiling Grid_SphericalInfallGetProfile.C
> Compiling Grid_SphericalInfallInitializeGrid.C
> Compiling Grid_StarParticleHandler.C
> Compiling Grid_StratifiedMediumExplosionInitialize.C
> Compiling Grid_SupernovaRestartInitialize.C
> Compiling Grid_SubtractAccretedMassFromSphere.C
> Compiling Grid_TestGravityCheckResults.C
> Compiling Grid_TestGravityInitializeGrid.C
> Compiling Grid_TestGravityMotionInitializeGrid.C
> Compiling Grid_TestGravitySphereCheckResults.C
> Compiling Grid_TestGravitySphereInitializeGrid.C
> Compiling Grid_TestOrbitInitializeGrid.C
> Compiling Grid_TestStarParticleInitializeGrid.C
> Compiling Grid_TracerParticleCreateParticles.C
> Compiling Grid_TracerParticleOutputData.C
> Compiling Grid_TracerParticleSetVelocity.C
> Compiling Grid_TransferSubgridParticles.C
> Compiling Grid_TransferSubgridStars.C
> Compiling Grid_TurbulenceSimulationInitialize.C
> Compiling Grid_UpdateParticlePosition.C
> Compiling Grid_UpdateParticleVelocity.C
> Compiling Grid_UpdateStarParticles.C
> Compiling Grid_WriteCubeInterpolate.C
> Compiling Grid_WriteCube.C
> Compiling Grid_WriteGridInterpolate.C
> Compiling Grid_WriteGrid.C
> Compiling Grid_WriteGridX.C
> Compiling Grid_WriteHierarchyInformationHDF5.C
> Compiling Grid_WriteMemoryMap.C
> Compiling Grid_WriteNewMovieData.C
> Compiling Grid_WriteNewMovieDataSeparateParticles.C
> Compiling Grid_WriteStuff.C
> Compiling Grid_WriteTaskMap.C
> Compiling Grid_ZeldovichPancakeInitializeGrid.C
> Compiling Grid_ZeroSolutionUnderSubgrid.C
> Compiling Grid_ZeusSolver.C
> Compiling Grid_xEulerSweep.C
> Compiling Grid_yEulerSweep.C
> Compiling Grid_zEulerSweep.C
> Compiling Group_ReadAllData.C
> Compiling Group_ReadDataHierarchy.C
> Compiling Group_WriteAllData.C
> Compiling Group_WriteDataHierarchy.C
> Compiling h5utilities.C
> Compiling HilbertCurve3D.C
> Compiling Hierarchy_DeleteHierarchyEntry.C
> Compiling HydroShockTubesInitialize.C
> Compiling ibm_fft64.F
> Compiling ibm_st1_fft64.F
> Compiling I_ColumnFormat.C
> Compiling IdentifyNewSubgridsBySignature.C
> Compiling ImplosionInitialize.C
> Compiling InexactNewton.C
> Compiling InexactNewton_constructor.C
> Compiling InexactNewton_destructor.C
> Compiling InexactNewton_InexactNewtonForce.C
> Compiling InexactNewton_LinesearchStepSize.C
> Compiling InexactNewton_Solve.C
> Compiling InitializeCloudyCooling.C
> Compiling InitializeEquilibriumCoolData.C
> Compiling InitializeGadgetEquilibriumCoolData.C
> Compiling InitializeLocal.C
> Compiling InitializeLymanWernerTable.C
> Compiling InitializeHM12Photorates.C
> Compiling InitializeMovieFile.C
> Compiling InitializeNew.C
> Compiling InitializePythonInterface.C
> Compiling InitializeRadiationFieldData.C
> Compiling InitializeRadiativeTransferSpectrumTable.C
> Compiling InitializeRateData.C
> Compiling InitialLoadBalanceRootGrids.C
> Compiling init_random_seed.F
> Compiling interp1d.F
> Compiling interp2d.F
> Compiling interp3d.F
> Compiling interpolate.F
> Compiling InterpretCommandLine.C
> Compiling inteuler.F
> Compiling intlgrg.F
> Compiling int_lin3d.F
> Compiling intrmp.F
> Compiling int_spline.F
> Compiling intpos.F
> Compiling intprim.F
> Compiling intvar.F
> Compiling Isdigit.C
> Compiling KHInitialize.C
> Compiling LevelHierarchy_AddLevel.C
> Compiling lgrg.F
> Compiling ListIO.C
> Compiling LoadBalanceHilbertCurve.C
> Compiling LoadBalanceHilbertCurveRootGrids.C
> Compiling LoadBalanceSimulatedAnnealing.C
> Compiling MagneticFieldResetter.C
> Compiling mbh_maker.C
> Compiling mcooling.F
> Compiling MakeFieldConservative.C
> Compiling MemoryAllocationRoutines.C
> Compiling MemoryPoolRoutines.C
> Compiling MersenneTwister.C
> Compiling mg_calc_defect.F
> Compiling mg_prolong2.F
> Compiling mg_prolong.F
> Compiling mg_relax.F
> Compiling mg_restrict.F
> Compiling mkl_st1.F90
> Compiling Mpich_V1_Dims_create.c
> Compiling multi_cool.F
> Compiling MultigridSolver.C
> Compiling mused.C
> Compiling NestedCosmologySimulationInitialize.C
> Compiling ngpinterp.F
> Compiling ngp_deposit.F
> Compiling ngp_deposit_c.c
> Compiling NohInitialize.C
> Compiling nr_1d.F90
> Compiling nr_2d.F90
> Compiling nr_3d.F90
> Compiling nr_st1.F90
> Compiling NullProblem.C
> Compiling OneZoneFreefallTestInitialize.C
> Compiling OutputAsParticleData.C
> Compiling OutputCoolingTimeOnly.C
> Compiling OutputDustTemperatureOnly.C
> Compiling OutputFromEvolveLevel.C
> Compiling OutputLevelInformation.C
> Compiling OutputPotentialFieldOnly.C
> Compiling OutputSmoothedDarkMatterOnly.C
> Compiling P_ColumnFormat.C
> Compiling ParticleMergeRoutines.C
> Compiling ParticleSplitter.C
> Compiling performance.C
> Compiling pgas2d_dual.F
> Compiling pgas2d.F
> Compiling PoissonSolverTestInitialize.C
> Compiling pop3_color_maker.F
> Compiling pop3_color_maker_c.c
> Compiling pop3_maker.F
> Compiling pop3_properties.F
> Compiling power_of_2.F
> Compiling prefort2.F
> Compiling PrepareDensityField.C
> Compiling PrepareGravitatingMassField.C
> Compiling PrepareIsolatedGreensFunction.C
> Compiling PressurelessCollapseInitialize.C
> Compiling ProblemType.C
> Compiling ProblemType_RotatingCylinder.C
> Compiling ProblemType_CollapsingCoolingCloud.C
> Compiling ProblemType_ExplodingCloud.C
> Compiling ProblemType_MagneticReconnection.C
> Compiling ProblemType_AgoraRestart.C
> Compiling ProcMap.C
> Compiling project.F
> Compiling projectbool.F
> Compiling ProjectToPlane.C
> Compiling ProjectToPlane2.C
> Compiling projplane.F
> Compiling prolong.F
> Compiling prolong_tsc.F
> Compiling ProtostellarCollapseInitialize.C
> Compiling ProtoSubgrid_AcceptableGrid.C
> Compiling ProtoSubgrid_CleanUp.C
> Compiling ProtoSubgrid_ComputeSecondDerivative.C
> Compiling ProtoSubgrid_ComputeSignature.C
> Compiling ProtoSubgrid_constructor.C
> Compiling ProtoSubgrid_CopyFlaggedZonesFromGrid.C
> Compiling ProtoSubgrid_CopyToNewSubgrid.C
> Compiling ProtoSubgrid_FindGridsByZeroSignature.C
> Compiling ProtoSubgrid_LargeAxisRatioCheck.C
> Compiling ProtoSubgrid_ReturnNthLongestDimension.C
> Compiling ProtoSubgrid_ShrinkToMinimumSize.C
> Compiling PutSinkRestartInitialize.C
> Compiling QuickSortAndDrag.C
> Compiling RadHydroConstTestInitialize.C
> Compiling RadHydroGreyMarshakWaveInitialize.C
> Compiling RadHydroPulseTestInitialize.C
> Compiling RadHydroRadShockInitialize.C
> Compiling RadHydroStreamTestInitialize.C
> Compiling RadiationGetUnits.C
> Compiling RadiatingShockInitialize.C
> Compiling RadiationFieldCalculateRates.C
> Compiling RadiationFieldLymanWernerTable.C
> Compiling RadiationFieldUpdate.C
> Compiling ReadAllData.C
> Compiling ReadAttr.C
> Compiling ReadEvolveRefineFile.C
> Compiling read_bt.C
> Compiling read_bv.C
> Compiling ReadDataHierarchy.C
> Compiling ReadFile.C
> Compiling ReadGridFile.C
> Compiling ReadIntFile.C
> Compiling ReadMetalCoolingRates.C
> Compiling ReadMetalCoolingRatios.C
> Compiling ReadParameterFile.C
> Compiling ReadRadiationData.C
> Compiling ReadStarParticleData.C
> Compiling ReadUnits.C
> Compiling RebuildHierarchy.C
> Compiling RecalibrateAccretingMass.C
> Compiling RecalibrateMBHFeedbackThermalRadius.C
> Compiling ReduceFragmentation.C
> Compiling Reduce_Times.C
> Compiling remap.F
> Compiling ReportMemoryUsage.C
> Compiling ReturnWallTime.C
> Compiling RHIonizationClumpInitialize.C
> Compiling RHIonizationSteepInitialize.C
> Compiling RHIonizationTestInitialize.C
> Compiling rotate2d.F
> Compiling rotate3d.F
> Compiling RotatingCylinderInitialize.C
> Compiling RotatingDiskInitialize.C
> Compiling RotatingSphereInitialize.C
> Compiling s66_st1.F90
> Compiling s90_st1.F90
> Compiling SearchUtilities.C
> Compiling SedovBlastInitialize.C
> Compiling select_fft.F90
> Compiling SetBoundaryConditions.C
> Compiling SetDefaultGlobalValues.C
> Compiling SetLevelTimeStep.C
> Compiling SetEvolveRefineRegion.C
> Compiling sgi_st1_fft64.F90
> Compiling ShearingBoxInitialize.C
> Compiling ShearingBox2DInitialize.C
> Compiling ShearingBoxStratifiedInitialize.C
> Compiling ShellSortAndDrag.C
> Compiling ShockInABoxInitialize.C
> Compiling ShockPoolInitialize.C
> Compiling sink_maker.C
> Compiling smooth_deposit.F
> Compiling smooth_deposit_c.c
> Compiling smooth.F
> Compiling solve_cool.F
> Compiling solve_rate.F
> Compiling solve_rate_cool.F
> Compiling SortCompareFunctions.C
> Compiling SphericalInfallInitialize.C
> Compiling StarListRoutines.C
> Compiling StarParticleAccretion.C
> Compiling StarParticleAddFeedback.C
> Compiling StarParticleCountOnly.C
> Compiling StarParticleDeath.C
> Compiling StarParticleFinalize.C
> Compiling StarParticleFindAll.C
> Compiling StarParticleInitialize.C
> Compiling StarParticleMergeNew.C
> Compiling StarParticleMergeMBH.C
> Compiling StarParticlePopIII_IMFInitialize.C
> Compiling StarParticleSetRefinementLevel.C
> Compiling StarParticleSubtractAccretedMass.C
> Compiling StarRoutines.C
> Compiling Star_Accrete.C
> Compiling Star_AccreteAngularMomentum.C
> Compiling Star_ActivateNewStar.C
> Compiling Star_ApplyFeedbackTrue.C
> Compiling Star_AssignAccretedAngularMomentum.C
> Compiling Star_AssignFinalMassFromIMF.C
> Compiling Star_CalculateFeedbackParameters.C
> Compiling Star_CalculateMassAccretion.C
> Compiling Star_CalculateMassLoss.C
> Compiling Star_ComputePhotonRates.C
> Compiling Star_DeleteCopyInGridGlobal.C
> Compiling Star_DeleteParticle.C
> Compiling Star_DisableParticle.C
> Compiling Star_FindFeedbackSphere.C
> Compiling Star_HitEndpoint.C
> Compiling Star_IsARadiationSource.C
> Compiling Star_MirrorToParticle.C
> Compiling Star_MultiplyAccretionRate.C
> Compiling Star_RemoveMassFromStarAfterFeedback.C
> Compiling Star_SetFeedbackFlag.C
> Compiling Star_SphereContained.C
> Compiling Star_SubtractAccretedMassFromCell.C
> Compiling star_feedback_pn_snia.F
> Compiling star_maker1.F
> Compiling star_maker2.F
> Compiling star_maker3mom.F
> Compiling star_maker3.F
> Compiling star_maker4.F
> Compiling star_maker5.F
> Compiling star_maker7.F
> Compiling star_maker8.C
> Compiling star_maker9.C
> Compiling star_maker10.F
> Compiling star_maker_h2reg.F
> Compiling star_maker_ssn.F
> Compiling StratifiedMediumExplosionInitialize.C
> Compiling SupernovaRestartInitialize.C
> Compiling SysMkdir.C
> Compiling TestGravityCheckResults.C
> Compiling TestGravityInitialize.C
> Compiling TestGravityMotion.C
> Compiling TestGravitySphereCheckResults.C
> Compiling TestGravitySphereInitialize.C
> Compiling TestOrbitInitialize.C
> Compiling TestStarParticleInitialize.C
> Compiling TracerParticleCreation.C
> Compiling TransposeRegionOverlap.C
> Compiling tscint1d.F
> Compiling tscint2d.F
> Compiling tscint3d.F
> Compiling TurbulenceSimulationInitialize.C
> Compiling turboinit.F
> Compiling twoshock.F
> Compiling UpdateFromFinerGrids.C
> Compiling UpdateLocalDatabase.C
> Compiling UpdateParticlePositions.C
> Compiling utilities.F
> Compiling uuid.C
> Compiling uuid/clear.c
> Compiling uuid/compare.c
> Compiling uuid/copy.c
> Compiling uuid/gen_uuid.c
> Compiling uuid/isnull.c
> Compiling uuid/pack.c
> Compiling uuid/parse.c
> Compiling uuid/unpack.c
> Compiling uuid/unparse.c
> Compiling uuid/uuid_time.c
> Compiling libconfig/grammar.c
> Compiling libconfig/libconfig.c
> Compiling libconfig/scanctx.c
> Compiling libconfig/scanner.c
> Compiling libconfig/strbuf.c
> Compiling wall_clock.c
> Compiling WavePoolInitialize.C
> Compiling wrapper1d.F90
> Compiling wrapper2d.F90
> Compiling wrapper3d.F90
> Compiling WriteAllDataCubes.C
> Compiling WriteAllData.C
> Compiling write_bt.C
> Compiling write_bv.C
> Compiling WriteConfigure.C
> Compiling WriteDataCubes.C
> Compiling WriteDataHierarchy.C
> Compiling WriteHDF5HierarchyFile.C
> Compiling WriteMemoryMap.C
> Compiling WriteParameterFile.C
> Compiling WriteRadiationData.C
> Compiling WriteStarParticleData.C
> Compiling WriteStreamData.C
> Compiling WriteStringAttr.C
> Compiling WriteTaskMap.C
> Compiling WriteTracerParticleData.C
> Compiling WriteUnits.C
> Compiling ZeldovichPancakeInitialize.C
> Compiling ZeusUtilities.C
> Compiling ZeusSource.C
> Compiling Zeus_xTransport.C
> Compiling Zeus_yTransport.C
> Compiling Zeus_zTransport.C
> Compiling Grid_MHD_Diagnose.C
> Compiling Grid_MHDCTEnergyToggle.C
> Compiling MHDBlastInitialize.C
> Compiling Grid_MHDBlastInitializeGrid.C
> Compiling Grid_MHD_ProjectFace.C
> Compiling Grid_ClearAvgElectricField.C
> Compiling ExternalBoundary_SetMagneticBoundary.C
> Compiling mhd_dt.F
> Compiling Grid_MHD_UpdateMagneticField.C
> Compiling Grid_MHDOrszagTangInitGrid.C
> Compiling Grid_MHD_SetupDims.C
> Compiling MHDOrszagTangInit.C
> Compiling MHDCT_ParameterJuggle.C
> Compiling MHDCTSetupFieldLabels.C
> Compiling mhd_li.F
> Compiling mhd_li_ms.F
> Compiling Grid_CenterMagneticField.C
> Compiling Grid_ComputeElectricField.C
> Compiling Grid_MHD_Curl.C
> Compiling pde1dsolver_mhd.F
> Compiling pde1dsolver_mhd_ms.F
> Compiling pde1dsolver_mhd_NewMS.F
> Compiling riemann_mhd.F
> Compiling mhd_hlld_isothermal.F
> Compiling mhd_hlld_adiabatic.F
> Compiling DebugTools.C
> Compiling Grid_MHD_CID.C
> Compiling Grid_MHD_ProlongAllocate.C
> Compiling mhd_interpolate.F
> Compiling Grid_MHD_SendOldFineGrids.C
> Compiling StochasticForcing_CommunicationBroadcastFlags.C
> Compiling StochasticForcing_CommunicationBroadcastSpectrum.C
> Compiling StochasticForcing_constructor.C
> Compiling StochasticForcing_destructor.C
> Compiling StochasticForcing_Evolve.C
> Compiling StochasticForcing_Init.C
> Compiling StochasticForcing_GaussDeviate.C
> Compiling StochasticForcing_ReadAndWrite.C
> Compiling ComputeStochasticForcing.C
> Compiling Grid_FTStochasticForcing.C
> Compiling DrivenFlowInitialize.C
> Compiling Grid_DrivenFlowInitializeGrid.C
> Compiling Grid_Phases.C
> Compiling CommunicationLoadBalancePhotonGrids.C
> Compiling CommunicationNonblockingRoutines.C
> Compiling CommunicationReceiverPhotons.C
> Compiling CommunicationSyncNumberOfPhotons.C
> Compiling CommunicationTransferPhotons.C
> Compiling CreateSourceClusteringTree.C
> Compiling DeletePhotonPackage.C
> Compiling DeleteRadiationSource.C
> Compiling EvolvePhotons.C
> Compiling FindCrossSection.C
> Compiling FindRootGrid.C
> Compiling FindSuperSource.C
> Compiling FindSuperSourceByPosition.C
> Compiling FLDCorrectForImpulses.C
> Compiling Grid_AddH2Dissociation.C
> Compiling Grid_AddH2DissociationFromSources.C
> Compiling Grid_AddH2DissociationFromTree.C
> Compiling Grid_AddRadiationImpulse.C
> Compiling Grid_AddRadiationPressureAcceleration.C
> Compiling Grid_AllocateInterpolatedRadiation.C
> Compiling Grid_CheckSubgridMarker.C
> Compiling Grid_CommunicationSendPhotonPackages.C
> Compiling Grid_CommunicationSendSubgridMarker.C
> Compiling Grid_ComputePhotonTimestep.C
> Compiling Grid_ComputePhotonTimestepHII.C
> Compiling Grid_ComputePhotonTimestepTau.C
> Compiling Grid_ConvertToCellCenteredRadiation.C
> Compiling Grid_CorrectRadiationIncompleteness.C
> Compiling Grid_CreateEmissivityLW.C
> Compiling Grid_DeleteEmissivity.C
> Compiling Grid_DeletePhotonPackages.C
> Compiling Grid_DetectIonizationFrontApprox.C
> Compiling Grid_ElectronFractionEstimate.C
> Compiling Grid_ExtraFunction.C
> Compiling Grid_FinalizeRadiationFields.C
> Compiling Grid_FindPhotonNewGrid.C
> Compiling Grid_FlagCellsToBeRefinedByOpticalDepth.C
> Compiling Grid_IdentifyRadiationPressureFields.C
> Compiling Grid_InitializeRadiativeTransferFields.C
> Compiling Grid_InitializeSource.C
> Compiling Grid_InterpolateRadiationFromParent.C
> Compiling Grid_MergePausedPhotonPackages.C
> Compiling Grid_RegridPausedPhotonPackage.C
> Compiling Grid_MoveAllPhotonPackages.C
> Compiling Grid_PhotonPeriodicBoundary.C
> Compiling Grid_PhotonTestInitializeGrid.C
> Compiling Grid_PhotonTestRestartInitializeGrid.C
> Compiling Grid_PhotonSortLinkedLists.C
> Compiling Grid_ReassignSuperSources.C
> Compiling Grid_ReturnSubgridMarker.C
> Compiling Grid_SetSubgridMarkerFromParent.C
> Compiling Grid_SetSubgridMarkerFromSibling.C
> Compiling Grid_SetSubgridMarkerFromSubgrid.C
> Compiling Grid_SubgridMarkerPostParallel.C
> Compiling Grid_Shine.C
> Compiling Grid_TransportPhotonPackages.C
> Compiling Grid_WalkPhotonPackage.C
> Compiling LinkedListRoutines.C
> Compiling PhotonPackageRoutines.C
> Compiling PhotonTestInitialize.C
> Compiling PhotonTestRestartInitialize.C
> Compiling RadiativeTransferCallFLD.C
> Compiling RadiativeTransferComputeTimestep.C
> Compiling RadiativeTransferHealpixRoutines.C
> Compiling RadiativeTransferLoadBalanceRevert.C
> Compiling RadiativeTransferInitialize.C
> Compiling RadiativeTransferPrepare.C
> Compiling RadiativeTransferReadParameters.C
> Compiling RadiativeTransferWriteParameters.C
> Compiling RadiativeTransferMoveLocalPhotons.C
> Compiling ReadPhotonSources.C
> Compiling ReadRadiativeTransferSpectrumTable.C
> Compiling ReassignSuperSources.C
> Compiling RestartPhotons.C
> Compiling ReturnValuesFromSpectrumTable.C
> Compiling SetSubgridMarker.C
> Compiling SplitPhotonPackage.C
> Compiling StarParticleRadTransfer.C
> Compiling TemperatureFieldToolsForComptonHeating.C
> Compiling WritePhotonSources.C
> Compiling hydro_rk/ModifiedBesselFunctions.C
> Compiling hydro_rk/AGNDiskInitialize.C
> Compiling hydro_rk/Collapse1DInitialize.C
> Compiling hydro_rk/Collapse3DInitialize.C
> Compiling hydro_rk/ComputeDednerWaveSpeeds.C
> Compiling hydro_rk/EvolveLevel_RK2.C
> Compiling hydro_rk/GalaxyDiskInitialize.C
> Compiling hydro_rk/Grid_AddSelfGravity.C
> Compiling hydro_rk/Grid_AddViscosity.C
> Compiling hydro_rk/Grid_AGNDiskInitializeGrid.C
> Compiling hydro_rk/Grid_Collapse1DInitializeGrid.C
> Compiling hydro_rk/Grid_Collapse3DInitializeGrid.C
> Compiling hydro_rk/Grid_CopyOldBaryonFieldToBaryonField.C
> Compiling hydro_rk/Grid_GalaxyDiskInitializeGrid.C
> Compiling hydro_rk/Grid_Hydro3D.C
> Compiling hydro_rk/Grid_ReturnHydroRKPointers.C
> Compiling hydro_rk/Grid_ReturnOldHydroRKPointers.C
> Compiling hydro_rk/Grid_RungeKutta2_1stStep.C
> Compiling hydro_rk/Grid_RungeKutta2_2ndStep.C
> Compiling hydro_rk/Grid_SaveSubgridFluxes.C
> Compiling hydro_rk/Grid_SetFloor.C
> Compiling hydro_rk/Grid_SetNumberOfColours.C
> Compiling hydro_rk/Grid_SourceTerms.C
> Compiling hydro_rk/Grid_TurbulenceInitializeGrid.C
> Compiling hydro_rk/Grid_UpdatePrim.C
> Compiling hydro_rk/Grid_ZeroFluxes.C
> Compiling hydro_rk/Grid_PrepareVelocityNormalization.C
> Compiling hydro_rk/Grid_PrepareAlfvenVelocityNormalization.C
> Compiling hydro_rk/Grid_NormalizeVelocities.C
> Compiling hydro_rk/Grid_NormalizeMagneticFields.C
> Compiling hydro_rk/Turbulence_Generator.C
> Compiling hydro_rk/HLL_PLM.C
> Compiling hydro_rk/HLL_PPM.C
> Compiling hydro_rk/HLLC_PLM.C
> Compiling hydro_rk/HydroLine.C
> Compiling hydro_rk/HydroSweepX.C
> Compiling hydro_rk/HydroSweepY.C
> Compiling hydro_rk/HydroSweepZ.C
> Compiling hydro_rk/LLF_PLM.C
> Compiling hydro_rk/LLF_Zero.C
> Compiling hydro_rk/LLF_Zero_MHD.C
> Compiling hydro_rk/Rec_PLM.C
> Compiling hydro_rk/Rec_ConsPLM.C
> Compiling hydro_rk/Rec_PPM.C
> Compiling hydro_rk/Riemann_HLL.C
> Compiling hydro_rk/Riemann_HLLC.C
> Compiling hydro_rk/Riemann_LLF.C
> Compiling hydro_rk/TurbulenceInitialize.C
> Compiling hydro_rk/CollapseMHD3DInitialize.C
> Compiling hydro_rk/Grid_AddAmbipolarDiffusion.C
> Compiling hydro_rk/Grid_AddResistivity.C
> Compiling hydro_rk/Grid_CollapseMHD3DInitializeGrid.C
> Compiling hydro_rk/Grid_MHD1DTestInitializeGrid.C
> Compiling hydro_rk/Grid_MHD1DTestWavesInitializeGrid.C
> Compiling hydro_rk/Grid_MHD2DTestInitializeGrid.C
> Compiling hydro_rk/Grid_MHD3DTestInitializeGrid.C
> Compiling hydro_rk/Grid_MHD3D.C
> Compiling hydro_rk/Grid_MHDRK2_1stStep.C
> Compiling hydro_rk/Grid_MHDRK2_2ndStep.C
> Compiling hydro_rk/Grid_MHDSourceTerms.C
> Compiling hydro_rk/Grid_MHDTurbulenceInitializeGrid.C
> Compiling hydro_rk/Grid_MHDDecayingRandomFieldInitializeGrid.C
> Compiling hydro_rk/Grid_ReduceWindBoundary.C
> Compiling hydro_rk/Grid_SaveMHDSubgridFluxes.C
> Compiling hydro_rk/Grid_UpdateMHDPrim.C
> Compiling hydro_rk/Grid_UpdateElectronDensity.C
> Compiling hydro_rk/HLL_PLM_MHD.C
> Compiling hydro_rk/LLF_PLM_MHD.C
> Compiling hydro_rk/HLL_PPM_MHD.C
> Compiling hydro_rk/HLLD_PLM_MHD.C
> Compiling hydro_rk/HLLD_Zero_MHD.C
> Compiling hydro_rk/MHD1DTestInitialize.C
> Compiling hydro_rk/MHD1DTestWavesInitialize.C
> Compiling hydro_rk/MHD2DTestInitialize.C
> Compiling hydro_rk/MHD3DTestInitialize.C
> Compiling hydro_rk/MHDLine.C
> Compiling hydro_rk/MHDSweepX.C
> Compiling hydro_rk/MHDSweepY.C
> Compiling hydro_rk/MHDSweepZ.C
> Compiling hydro_rk/MHDTurbulenceInitialize.C
> Compiling hydro_rk/MHDDecayingRandomFieldInitialize.C
> Compiling hydro_rk/Riemann_HLL_MHD.C
> Compiling hydro_rk/Riemann_HLLD_MHD.C
> Compiling hydro_rk/Riemann_LLF_MHD.C
> Linking enzo executable. Type  cat out.compile  in case it fails.
> make: *** [Makefile:137: enzo.exe] Error 1
>
>
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