<div dir="ltr">As the error message suggests, you should either set:<div><br></div><div>ds.periodicity = (True, True, True)</div><div><br></div><div>or select data from a region that does not border the simulation domain.</div><div><br></div><div>We have long term plans to fix this, see e.g.:</div><div><br></div><div><a href="https://github.com/yt-project/yt/issues/1366">https://github.com/yt-project/yt/issues/1366</a><br></div><div><br></div><div>Also you may want to update your mailing list settings to not use digest mode so you don't need to wait a week to get a response from me :)</div><div><br></div><div>-Nathan</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Thu, May 11, 2017 at 11:14 AM, Kalina Borkiewicz <span dir="ltr"><<a href="mailto:kalina@illinois.edu" target="_blank">kalina@illinois.edu</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div bgcolor="#FFFFFF" text="#000000">
Hi Nathan,<br>
<br>
Thanks for getting back to me. Yes, I am looking to compute a field
in the grid, and a ghost zone of size 1 surrounding the grid, for
FLASH data, specifically. Your code snippet works for the
IsolatedGalaxy Enzo dataset, but doesn't work on the GasSloshing
FLASH dataset from <a class="m_-182324628992260906moz-txt-link-freetext" href="http://yt-project.org/data/" target="_blank">http://yt-project.org/data/</a> . I get this error on
retrieve_ghost_zones:<br>
<br>
"<br>
Traceback (most recent call last):<br>
File "writeAMRVDB_FLASH.py", line 28, in <module><br>
gz_grid = grid.retrieve_ghost_zones(1, variable)<br>
File
"/i0/src/sci/yt33ana/yt-conda/<wbr>src/yt-hg/yt/data_objects/<wbr>grid_patch.py",
line 250, in retrieve_ghost_zones<br>
**kwargs)<br>
File
"/i0/src/sci/yt33ana/yt-conda/<wbr>src/yt-hg/yt/data_objects/<wbr>construction_data_containers.<wbr>py",
line 543, in __init__<br>
self.get_data(fields)<br>
File
"/i0/src/sci/yt33ana/yt-conda/<wbr>src/yt-hg/yt/data_objects/<wbr>construction_data_containers.<wbr>py",
line 629, in get_data<br>
if len(fill) > 0: self._fill_fields(fill)<br>
File
"/i0/src/sci/yt33ana/yt-conda/<wbr>src/yt-hg/yt/data_objects/<wbr>construction_data_containers.<wbr>py",
line 667, in _fill_fields<br>
for chunk in self._data_source.chunks(<wbr>fields, "io"):<br>
File
"/i0/src/sci/yt33ana/yt-conda/<wbr>src/yt-hg/yt/data_objects/<wbr>data_containers.py",
line 1079, in chunks<br>
self.get_data() # Ensure we have built ourselves<br>
File
"/i0/src/sci/yt33ana/yt-conda/<wbr>src/yt-hg/yt/data_objects/<wbr>data_containers.py",
line 1113, in get_data<br>
self.index._identify_base_<wbr>chunk(self)<br>
File
"/i0/src/sci/yt33ana/yt-conda/<wbr>src/yt-hg/yt/geometry/grid_<wbr>geometry_handler.py",
line 290, in _identify_base_chunk<br>
gi = dobj.selector.select_grids(<wbr>self.grid_left_edge,<br>
File
"/i0/src/sci/yt33ana/yt-conda/<wbr>src/yt-hg/yt/data_objects/<wbr>data_containers.py",
line 1074, in selector<br>
self._selector = sclass(self)<br>
File "yt/geometry/selection_<wbr>routines.pyx", line 855, in
yt.geometry.selection_<wbr>routines.RegionSelector.__<wbr>init__
(yt/geometry/selection_<wbr>routines.c:16696)<br>
RuntimeError: Error: yt attempted to read outside the boundaries of
a non-periodic domain along dimension 0.<br>
Region left edge = -4.16556e+24 code_length, Region right edge =
4.16556e+24 code_length<br>
Dataset left edge = -3.70272e+24 code_length, Dataset right edge =
3.70272e+24 code_length<br>
<br>
This commonly happens when trying to compute ghost cells up to the
domain boundary. Two possible solutions are to load a smaller region
that does not border the edge or override the periodicity for this
dataset.<br>
"<br>
<br>
<br>
-Kalina<br>
<br>
<br>
<hr>
<pre>Hi Kalina,
We have a way of generating ghost zones using internal APIs that you may be
able to use.
What sort of ghost zone information do you need? Something like for a given
grid patch, you want to be able to compute a field in the grid and some
ghost zones surrounding the grid?
If so, something like this should work:
import yt
# available for download at <a href="http://yt-project.org/data" target="_blank">yt-project.org/data</a>
ds = yt.load('IsolatedGalaxy/<wbr>galaxy0030/galaxy0030')
# grab a grid object, ds.index.grids is a python list containing
# references to all of the grids in the simulation
grid = ds.index.grids[0]
gz_grid = grid.retrieve_ghost_zones(3, 'density')
print(gz_grid['density'].<wbr>shape)
print(grid['density'].shape)
This should print "(38, 38, 38)" and "(32, 32, 32)".
Note that this will only work for patch AMR data (e.g. FLASH, Enzo, Boxlib,
etc). Also note that the retrieve_ghost_zones function takes a "smoothed"
keyword argument, which if set to True will use interpolation to estimate
field values and if set to False (the default) will use nearest neighbor
sampling.
-Nathan
On Wed, May 3, 2017 at 11:50 AM, Kalina Borkiewicz <<a href="http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org" target="_blank">kalina at illinois.edu</a>>
wrote:
><i> I see in the yt 3.3 change log that "ghost zone generation" is a thing,
</i>><i> but I can't seem to find anything else about this.
</i>><i>
</i>><i> I would like to generate ghost zones for FLASH data. I tried
</i>><i> retrieve_ghost_zones() but that gives an error, and I can't find any other
</i>><i> ghost zone-related functions. Could I get some advice?
</i>><i>
</i>><i> Thanks,
</i>><i> Kalina</i></pre>
<br>
<div class="m_-182324628992260906moz-cite-prefix">On 05/11/2017 10:55 AM,
<a class="m_-182324628992260906moz-txt-link-abbreviated" href="mailto:yt-users-request@lists.spacepope.org" target="_blank">yt-users-request@lists.<wbr>spacepope.org</a> wrote:<br>
</div>
<blockquote type="cite">
<pre>Send yt-users mailing list submissions to
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To subscribe or unsubscribe via the World Wide Web, visit
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or, via email, send a message with subject or body 'help' to
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When replying, please edit your Subject line so it is more specific
than "Re: Contents of yt-users digest..."
Today's Topics:
1. Re: ENZO build error (Alankar Dutta)
------------------------------<wbr>------------------------------<wbr>----------
Message: 1
Date: Thu, 11 May 2017 21:24:55 +0530
From: Alankar Dutta <a class="m_-182324628992260906moz-txt-link-rfc2396E" href="mailto:dutta.alankar@gmail.com" target="_blank"><dutta.alankar@gmail.com></a>
To: Discussion of the yt analysis package
<a class="m_-182324628992260906moz-txt-link-rfc2396E" href="mailto:yt-users@lists.spacepope.org" target="_blank"><yt-users@lists.spacepope.org></a>
Subject: Re: [yt-users] ENZO build error
Message-ID:
<a class="m_-182324628992260906moz-txt-link-rfc2396E" href="mailto:CA+6Z7qpeKA+zXdtWHjNe4wsf5S0aYexW8F9dGKXJsJY_C5AXVw@mail.gmail.com" target="_blank"><CA+6Z7qpeKA+<wbr>zXdtWHjNe4wsf5S0aYexW8F9dGKXJs<wbr>JY_C5AXVw@mail.gmail.com></a>
Content-Type: text/plain; charset="utf-8"
Hi David,
I saw that file. Couldn't figure out what's wrong.
I am attaching it.
Alankar
On Thu, May 11, 2017 at 6:28 PM, David Collins <a class="m_-182324628992260906moz-txt-link-rfc2396E" href="mailto:dcollins4096@gmail.com" target="_blank"><dcollins4096@gmail.com></a>
wrote:
</pre>
<blockquote type="cite">
<pre>Hi, Alankar--
In src/enzo there's a file, out.compile. That will have your linking
errors, look in that. Let me know if it's not obvious what to do after you
look there.
d.
On Wed, May 10, 2017 at 11:50 PM, Alankar Dutta <a class="m_-182324628992260906moz-txt-link-rfc2396E" href="mailto:dutta.alankar@gmail.com" target="_blank"><dutta.alankar@gmail.com></a>
wrote:
</pre>
<blockquote type="cite">
<pre>Hello yt-community,
I was trying to build ENZO. I downloaded yt for Python 2 compiled all
dependent libraries and activated yt with mercurial installed. when I issue
make, I get the following error. I am also attaching my make.mach file I
used.
Alankar
Updating DEPEND
make: [Makefile:361: dep] Error 127 (ignored)
make: [Makefile:362: dep] Error 127 (ignored)
make: [Makefile:363: dep] Error 127 (ignored)
make: [Makefile:364: dep] Error 127 (ignored)
make: [Makefile:365: dep] Error 127 (ignored)
make: [Makefile:366: dep] Error 127 (ignored)
make: [Makefile:367: dep] Error 127 (ignored)
Compiling enzo.C
Compiling MHDLoopInit.C
Compiling Grid_MHDLoopInitGrid.C
Compiling acml_st1.F
Compiling AdiabaticExpansionInitialize.C
Compiling AdjustRefineRegion.C
Compiling AdjustMustRefineParticlesRefin<wbr>eToLevel.C
Compiling AMRH5writer.C
Compiling AnalysisBaseClass.C
Compiling AnalysisBaseClass_HDF5Utils.C
Compiling arccosh.C
Compiling arcsinh.C
Compiling AssignGridToTaskMap.C
Compiling auto_show_compile_options.C
Compiling auto_show_config.C
Compiling auto_show_flags.C
Compiling auto_show_version.C
Compiling BlockSolve.F
Compiling calcdiss.F
Compiling calc_dt.F
Compiling calc_dt_c.c
Compiling calc_eigen.F
Compiling calc_photo_rates.F
Compiling calc_rad.F
Compiling calc_rates.F
Compiling calc_tdust_1d.F
Compiling calc_tdust_3d.F
Compiling CalcEmiss.C
Compiling CheckEmissivity.C
Compiling ClearEmissivity.C
Compiling CalculateSubtractionParameters<wbr>.C
Compiling CallProblemSpecificRoutines.C
Compiling CallPython.C
Compiling CheckEnergyConservation.C
Compiling CheckForOutput.C
Compiling CheckForResubmit.C
Compiling CheckForTimeAction.C
Compiling CheckShearingBoundaryConsisten<wbr>cy.C
Compiling chtable.F
Compiling cic_deposit.F
Compiling cic_deposit_c.c
Compiling cic_flag.F
Compiling cic_flag_c.c
Compiling cic_interp.F
Compiling cic_interp_c.c
Compiling cicinterp.F
Compiling cie_thin_cooling_rate.F
Compiling cluster_maker.F
Compiling ClusterInitialize.C
Compiling ClusterSMBHSumGasMass.C
Compiling c_message.C
Compiling colh2diss.F
Compiling CollapseTestInitialize.C
Compiling coll_rates.F
Compiling CommunicationBroadcastValue.C
Compiling CommunicationBufferedSend.C
Compiling CommunicationCombineGrids.C
Compiling CommunicationCollectParticles.<wbr>C
Compiling CommunicationInitialize.C
Compiling CommunicationLoadBalanceRootGr<wbr>ids.C
Compiling CommunicationLoadBalanceGrids.<wbr>C
Compiling CommunicationMergeStarParticle<wbr>.C
Compiling CommunicationParallelFFT.C
Compiling CommunicationPartitionGrid.C
Compiling CommunicationReceiveFluxes.C
Compiling CommunicationReceiveHandler.C
Compiling CommunicationSendFluxes.C
Compiling CommunicationShareGrids.C
Compiling CommunicationShareParticles.C
Compiling CommunicationShareStars.C
Compiling CommunicationSyncNumberOfParti<wbr>cles.C
Compiling CommunicationTransferParticles<wbr>Opt.C
Compiling CommunicationTransferStarsOpt.<wbr>C
Compiling CommunicationTransferSubgridPa<wbr>rticles.C
Compiling CommunicationTranspose.C
Compiling CommunicationUpdateStarParticl<wbr>eCount.C
Compiling CommunicationUtilities.C
Compiling ConductionBubbleInitialize.C
Compiling ConductionCloudInitialize.C
Compiling ConductionTestInitialize.C
Compiling comp_accel.F
Compiling ComputePotentialFieldLevelZero<wbr>.C
Compiling ComputeRandomForcingNormalizat<wbr>ion.C
Compiling ComputeTable.C
Compiling Continue.C
Compiling cool1d_cloudy.F
Compiling cool1d_koyama.F
Compiling cool1d_multi.F
Compiling cool1d_sep.F
Compiling cool1d.F
Compiling cool_multi_lum.F
Compiling cool_multi_time.F
Compiling cool_time.F
Compiling CoolingTestInitialize.C
Compiling CopyParticlesAcrossPeriodicBou<wbr>ndaries.C
Compiling CopyOverlappingParticleMassFie<wbr>lds.C
Compiling CopyOverlappingZones.C
Compiling CopyZonesFromOldGrids.C
Compiling CosmoIonizationInitialize.C
Compiling CosmologyComputeExpansionFacto<wbr>r.C
Compiling CosmologyComputeExpansionTimes<wbr>tep.C
Compiling CosmologyComputeTimeFromRedshi<wbr>ft.C
Compiling CosmologyGetUnits.C
Compiling CosmologyReadParameters.C
Compiling CosmologySimulationInitialize.<wbr>C
Compiling CosmologyWriteParameters.C
Compiling cray_x1_fft64.F
Compiling cray_x1_st1_fft64.F
Compiling CreateSiblingList.C
Compiling CreateSmoothedDarkMatterFields<wbr>.C
Compiling CreateSUBlingList.C
Compiling CreateFluxes.C
Compiling CRShockTubesInitialize.C
Compiling InitializeFluxes.C
Compiling DeleteFluxes.C
Compiling DeleteSUBlingList.C
Compiling DepositBaryons.C
Compiling DepositParticleMassField.C
Compiling DepositParticleMassFlaggingFie<wbr>ld.C
Compiling DetermineNumberOfNodes.C
Compiling DetermineParallelism.C
Compiling DetermineSubgridSizeExtrema.C
Compiling DoubleMachInitialize.C
Compiling E_ColumnFormat.C
Compiling ealFloat.C
Compiling ealInt.C
Compiling Enzo_Dims_create.C
Compiling EnzoVector.C
Compiling EnzoVector_Exchange.C
Compiling EnzoVector_ExchangeStart.C
Compiling EnzoVector_ExchangeEnd.C
Compiling EnzoVector_test.C
Compiling euler.F
Compiling EvolveHierarchy.C
Compiling EventHooks.C
Compiling execinfo_local.c
Compiling expand_terms.F
Compiling expand_mhd_terms.F
Compiling ExternalBoundary_AddField.C
Compiling ExposeDataHierarchy.C
Compiling ExposeGridHierarchy.C
Compiling ExternalBoundary_<wbr>AppendForcingToBaryonFields.C
Compiling ExternalBoundary_constructor.C
Compiling ExternalBoundary_<wbr>DetachForcingFromBaryonFields.<wbr>C
Compiling ExternalBoundary_<wbr>DeleteObsoleteFields.C
Compiling ExternalBoundary_<wbr>IdentifyPhysicalQuantities.C
Compiling ExternalBoundary_<wbr>InitializeExternalBoundaryFace<wbr>IO.C
Compiling ExternalBoundary_Prepare.C
Compiling ExternalBoundary_<wbr>ReadExternalBoundary.C
Compiling ExternalBoundary_<wbr>SetDoubleMachBoundary.C
Compiling ExternalBoundary_<wbr>SetExternalBoundaryIO.C
Compiling ExternalBoundary_<wbr>SetExternalBoundaryParticles.C
Compiling ExternalBoundary_<wbr>SetShockPoolBoundary.C
Compiling ExternalBoundary_<wbr>SetGalaxySimulationBoundary.C
Compiling ExternalBoundary_<wbr>SetWavePoolBoundary.C
Compiling ExternalBoundary_<wbr>SetWengenCollidingFlowBoundary<wbr>.C
Compiling ExternalBoundary_<wbr>WriteExternalBoundary.C
Compiling ExtraOutput.C
Compiling ExtractSection.C
Compiling FastFourierTransform.C
Compiling FastFourierTransformPrepareCom<wbr>plex.C
Compiling FastFourierTransformSGIMATH.C
Compiling EvolveLevel.C
Compiling FastSiblingLocatorFinalize.C
Compiling FastSiblingLocatorInitialize.C
Compiling FastSiblingLocatorInitializeSt<wbr>aticChainingMesh.C
Compiling feedback_formulae.F
Compiling fft66.F
Compiling fft90.F90
Compiling ffte4X.F90
Compiling ffte_st1.F90
Compiling fft_utils.F
Compiling FinalizeFluxes.C
Compiling FindCube.C
Compiling FindField.C
Compiling FindSubgrids.C
Compiling flow.C
Compiling flux_hll.F
Compiling flux_hllc.F
Compiling flux_twoshock.F
Compiling FOF.C
Compiling FOF_allocate.C
Compiling FOF_cmpfunc.C
Compiling FOF_density.C
Compiling FOF_Finalize.C
Compiling FOF_forcetree.C
Compiling FOF_iindexx.C
Compiling FOF_indexx.C
Compiling FOF_Initialize.C
Compiling FOF_ngbtree.C
Compiling FOF_nrutil.C
Compiling FOF_potential.C
Compiling FOF_properties.C
Compiling FOF_selectb.C
Compiling FOF_sort2_flt_int.C
Compiling FOF_sort2_int.C
Compiling FOF_sort_int.C
Compiling FOF_subfind.C
Compiling FOF_subgroups.C
Compiling FOF_unbind.C
Compiling fortio.F
Compiling fourn.F
Compiling FreeRealMem.c
Compiling FreeExpansionInitialize.C
Compiling FreezeRateData.C
Compiling FriendOfFriend.C
Compiling FSMultiSourceInitialize.C
Compiling FSProb_ComputeOpacityLW.C
Compiling FSProb_constructor.C
Compiling FSProb_destructor.C
Compiling FSProb_FInterface.C
Compiling FSProb_EnforceBoundary.C
Compiling FSProb_Evolve.C
Compiling FSProb_Initialize.C
Compiling FSProb_Dump.C
Compiling FSProb_InitialGuess.F90
Compiling FSProb_SetupSystem.F90
Compiling FSProb_WriteParameters.C
Compiling FSProb_RadiationSource.F90
Compiling FSProb_SetupBoundary.C
Compiling F_ColumnFormat.C
Compiling f_message.F
Compiling Gadget.C
Compiling GadgetInitCoolMemory.C
Compiling GadgetIonizeParamsTable.C
Compiling GadgetMakeCoolingTable.C
Compiling GadgetReadIonizeParams.C
Compiling GalaxySimulationInitialize.C
Compiling GenerateGridArray.C
Compiling GetNodeFreeMemory.C
Compiling GetUnits.C
Compiling gFLDProblem_AnalyticalEqns.F90
Compiling gFLDProblem_ChemistrySource.<wbr>F90
Compiling gFLDProblem_ComputeRHS.C
Compiling gFLDProblem_<wbr>ComputeRadiationIntegrals.C
Compiling gFLDProblem_<wbr>ComputeTemperature.C
Compiling gFLDProblem_ComputeTimeStep.C
Compiling gFLDProblem_constructor.C
Compiling gFLDProblem_CrossSections.C
Compiling gFLDProblem_destructor.C
Compiling gFLDProblem_DiffRHS.F90
Compiling gFLDProblem_Dump.C
Compiling gFLDProblem_EnforceBoundary.C
Compiling gFLDProblem_Evolve.C
Compiling gFLDProblem_FInterface.C
Compiling gFLDProblem_GasEnergySource.<wbr>F90
Compiling gFLDProblem_InitialGuess.C
Compiling gFLDProblem_Initialize.C
Compiling gFLDProblem_LocalJac.F90
Compiling gFLDProblem_LocalRHS.F90
Compiling gFLDProblem_LocRHS.C
Compiling gFLDProblem_lsetup.C
Compiling gFLDProblem_lsolve.C
Compiling gFLDProblem_MatrixEntries.F90
Compiling gFLDProblem_nlresid.C
Compiling gFLDProblem_Opacity.F90
Compiling gFLDProblem_RadiationSource.<wbr>F90
Compiling gFLDProblem_RadiationSpectrum.<wbr>C
Compiling gFLDProblem_SetNewtonBCs.F90
Compiling gFLDProblem_SetupBoundary.C
Compiling gFLDProblem_UpdateBoundary.C
Compiling gFLDProblem_WriteParameters.C
Compiling gFLDSplit_AnalyticChemistry.<wbr>F90
Compiling gFLDSplit_ChemistrySource.F90
Compiling gFLDSplit_<wbr>ComputeRadiationIntegrals.C
Compiling gFLDSplit_ComputeTemperature.C
Compiling gFLDSplit_ComputeTimeStep.C
Compiling gFLDSplit_constructor.C
Compiling gFLDSplit_CrossSections.C
Compiling gFLDSplit_destructor.C
Compiling gFLDSplit_Dump.C
Compiling gFLDSplit_EnforceBoundary.C
Compiling gFLDSplit_Evolve.C
Compiling gFLDSplit_FInterface.C
Compiling gFLDSplit_FillRates.C
Compiling gFLDSplit_GasEnergySource.F90
Compiling gFLDSplit_InitialGuess.C
Compiling gFLDSplit_Initialize.C
Compiling gFLDSplit_Opacity.F90
Compiling gFLDSplit_RadiationSource.F90
Compiling gFLDSplit_RadiationSpectrum.C
Compiling gFLDSplit_SetupBoundary.C
Compiling gFLDSplit_SetupSystem.F90
Compiling gFLDSplit_WriteParameters.C
Compiling GravityEquilibriumTestInitiali<wbr>ze.C
Compiling Grid_<wbr>AccelerationBoundaryRoutines.C
Compiling Grid_AccessBaryonFields.C
Compiling Grid_<wbr>AddBaryonsToGravitatingMassFie<wbr>ld.C
Compiling Grid_AddExternalAcceleration.C
Compiling Grid_<wbr>AddExternalPotentialField.C
Compiling Grid_AddFeedbackSphere.C
Compiling Grid_<wbr>AddFieldMassToMassFlaggingFiel<wbr>d.C
Compiling Grid_AddFields.C
Compiling Grid_AddOneParticleFromList.C
Compiling Grid_<wbr>AddOverlappingParticleMassFiel<wbr>d.C
Compiling Grid_AddParticlesFromList.C
Compiling Grid_AddRandomForcing.C
Compiling Grid_AddToBoundaryFluxes.C
Compiling Grid_AllocateGrids.C
Compiling Grid_AnalyzeTrackPeaks.C
Compiling Grid_<wbr>AppendForcingToBaryonFields.C
Compiling Grid_ApplyTimeAction.C
Compiling Grid_CalculateAngularMomentum.<wbr>C
Compiling Grid_<wbr>ChangeParticleTypeBeforeSN.C
Compiling Grid_<wbr>CheckForExternalReflections.C
Compiling Grid_CheckForOverlap.C
Compiling Grid_CheckForPossibleOverlap.C
Compiling Grid_CheckForSharedFace.C
Compiling grid_cic.F
Compiling grid_ngp.F
Compiling Grid_CleanUpMovedParticles.C
Compiling Grid_CleanUp.C
Compiling Grid_ClearBoundaryFluxes.C
Compiling Grid_ClearFlaggingField.C
Compiling Grid_<wbr>ClearGravitatingMassField.C
Compiling Grid_<wbr>ClearGravitatingMassFieldParti<wbr>cles.C
Compiling Grid_ClearMassFlaggingField.C
Compiling Grid_<wbr>ClearParticleAccelerations.C
Compiling Grid_<wbr>ClearParticleMassFlaggingField<wbr>.C
Compiling Grid_ClusterInitializeGrid.C
Compiling Grid_ClusterSMBHFeedback.C
Compiling Grid_<wbr>ClusterSMBHEachGridGasMass.C
Compiling Grid_<wbr>CollapseTestInitializeGrid.C
Compiling Grid_CollectGridInformation.C
Compiling Grid_CollectParticles.C
Compiling Grid_<wbr>CollectParticleMassFlaggingFie<wbr>ld.C
Compiling Grid_CollectStars.C
Compiling Grid_CommunicationMoveGrid.C
Compiling Grid_<wbr>CommunicationReceiveRegion.C
Compiling Grid_<wbr>CommunicationSendParticles.C
Compiling Grid_CommunicationSendStars.C
Compiling Grid_CommunicationSendRegion.C
Compiling Grid_<wbr>CommunicationTransferParticles<wbr>Opt.C
Compiling Grid_<wbr>CommunicationTransferStarsOpt.<wbr>C
Compiling Grid_ComovingExpansionTerms.C
Compiling Grid_<wbr>ComovingGravitySourceTerm.C
Compiling Grid_<wbr>ComputeAccelerationFieldExtern<wbr>al.C
Compiling Grid_ComputeAccelerationField.<wbr>C
Compiling Grid_ComputeAccelerations.C
Compiling Grid_<wbr>ComputeAccelerationsFromExtern<wbr>alPotential.C
Compiling Grid_ComputeCellCenteredField.<wbr>C
Compiling Grid_<wbr>ComputeConductionTimeStep.C
Compiling Grid_ComputeCoolingTime.C
Compiling Grid_ComputeCRDiffusion.C
Compiling Grid_<wbr>ComputeCRDiffusionTimeStep.C
Compiling Grid_<wbr>ComputeDustTemperatureField.C
Compiling Grid_ComputeElementalDensity.C
Compiling Grid_ComputeEnergy.C
Compiling Grid_<wbr>ComputeExternalNohBoundary.C
Compiling Grid_ComputeGammaField.C
Compiling Grid_ComputeHeat.C
Compiling Grid_ComputeLuminosity.C
Compiling Grid_<wbr>ComputeMetalLineLuminosity.C
Compiling Grid_<wbr>ComputeOneZoneCollapseFactor.C
Compiling Grid_ComputePressure.C
Compiling Grid_<wbr>ComputeRandomForcingFields.C
Compiling Grid_ComputeTemperatureField.C
Compiling Grid_ComputeTimeStep.C
Compiling Grid_<wbr>ComputeVectorAnalysisFields.C
Compiling Grid_<wbr>ComputeVertexCenteredField.C
Compiling Grid_ComputeXrayEmissivity.C
Compiling Grid_ConductHeat.C
Compiling Grid_<wbr>ConductionBubbleInitialize.C
Compiling Grid_<wbr>ConductionCloudInitialize.C
Compiling Grid_ConductionTestInitialize.<wbr>C
Compiling Grid_constructor.C
Compiling Grid_<wbr>ConvertTotalEnergyToGasEnergy.<wbr>C
Compiling Grid_ConvertToNumpy.C
Compiling Grid_CoolingTestResetEnergies.<wbr>C
Compiling Grid_<wbr>CoolingTestInitializeGrid.C
Compiling Grid_<wbr>CopyBaryonFieldToOldBaryonFiel<wbr>d.C
Compiling Grid_CopyOverlappingMassField.<wbr>C
Compiling Grid_<wbr>CopyParentToGravitatingFieldBo<wbr>undary.C
Compiling Grid_CopyPotentialField.C
Compiling Grid_<wbr>CopyPotentialToBaryonField.C
Compiling Grid_<wbr>CopyZonesFromGridCountOnly.C
Compiling Grid_CopyZonesFromGrid.C
Compiling Grid_CorrectForRefinedFluxes.C
Compiling Grid_<wbr>CosmoIonizationInitializeGrid.<wbr>C
Compiling Grid_<wbr>CosmologyInitializeParticles.C
Compiling Grid_<wbr>CosmologySimulationInitializeG<wbr>rid.C
Compiling Grid_CreateChildParticles.C
Compiling Grid_CreateFieldArray.C
Compiling Grid_<wbr>CreateParticleTypeGrouping.C
Compiling Grid_<wbr>CRShockTubesInitializeGrid.C
Compiling Grid_DebugCheck.C
Compiling Grid_DeleteAllButParticles.C
Compiling Grid_DeleteAllFields.C
Compiling Grid_DeleteBaryonFields.C
Compiling Grid_DeleteFlaggingField.C
Compiling Grid_DeleteObsoleteFields.C
Compiling Grid_DepositBaryons.C
Compiling Grid_<wbr>DepositMustRefineParticles.C
Compiling Grid_DepositParticlePositions.<wbr>C
Compiling Grid_<wbr>DepositParticlePositionsLocal.<wbr>C
Compiling Grid_DepositPositions.C
Compiling Grid_destructor.C
Compiling Grid_<wbr>DetachForcingFromBaryonFields.<wbr>C
Compiling Grid_DoubleMachInitializeGrid.<wbr>C
Compiling Grid_<wbr>FastSiblingLocatorAddGrid.C
Compiling Grid_<wbr>FastSiblingLocatorFindSiblings<wbr>.C
Compiling Grid_FindAllStarParticles.C
Compiling Grid_FindMassiveParticles.C
Compiling Grid_FindMinimumParticleMass.C
Compiling Grid_FindNewStarParticles.C
Compiling Grid_FindShocks.C
Compiling Grid_FinishFFT.C
Compiling Grid_FlagBufferZones.C
Compiling Grid_<wbr>FlagCellsToAvoidRefinement.C
Compiling Grid_<wbr>FlagCellsToAvoidRefinementRegi<wbr>on.C
Compiling Grid_<wbr>FlagCellsToBeRefinedByCoolingT<wbr>ime.C
Compiling Grid_<wbr>FlagCellsToBeRefinedByJeansLen<wbr>gth.C
Compiling Grid_<wbr>FlagCellsToBeRefinedByTotalJea<wbr>nsLength.C
Compiling Grid_<wbr>FlagCellsToBeRefinedByMass.C
Compiling Grid_<wbr>FlagCellsToBeRefinedByMetallic<wbr>ity.C
Compiling Grid_<wbr>FlagCellsToBeRefinedByMetalMas<wbr>s.C
Compiling Grid_<wbr>FlagCellsToBeRefinedByMustRefi<wbr>neRegion.C
Compiling Grid_<wbr>FlagCellsToBeRefinedByResistiv<wbr>eLength.C
Compiling Grid_<wbr>FlagCellsToBeRefinedByShear.C
Compiling Grid_<wbr>FlagCellsToBeRefinedByShocks.C
Compiling Grid_<wbr>FlagCellsToBeRefinedByShockwav<wbr>es.C
Compiling Grid_<wbr>FlagCellsToBeRefinedBySlope.C
Compiling Grid_<wbr>FlagCellsToBeRefinedBySecondDe<wbr>rivative.C
Compiling Grid_FlagRefinedCells.C
Compiling Grid_FlagGridArray.C
Compiling Grid_<wbr>FreeExpansionInitializeGrid.C
Compiling Grid_<wbr>FSMultiSourceInitializeGrid.C
Compiling Grid_GadgetCalculateCooling.C
Compiling Grid_<wbr>GadgetComputeTemperatureDEF.C
Compiling Grid_GadgetComputeTemperature.<wbr>C
Compiling Grid_Gadgetconvertutotemp.C
Compiling Grid_GadgetCoolingRate.C
Compiling Grid_GadgetCoolingRateFromU.C
Compiling Grid_GadgetCoolingTime.C
Compiling Grid_<wbr>Gadgetfindabundancesandrates.C
Compiling Grid_GadgetEquilibriumCooling.<wbr>C
Compiling Grid_<wbr>GalaxySimulationInitializeGrid<wbr>.C
Compiling Grid_GetEnclosedMass.C
Compiling Grid_GetEnclosedMassInShell.C
Compiling Grid_<wbr>GetProjectedBoundaryFluxes.C
Compiling Grid_GrackleWrapper.C
Compiling Grid_<wbr>GravityEquilibriumTestInitiali<wbr>zeGrid.C
Compiling Grid_Group_<wbr>WriteGridInterpolate.C
Compiling Grid_Group_WriteGrid.C
Compiling Grid_Group_ReadGrid.C
Compiling New_Grid_WriteGrid.C
Compiling New_Grid_ReadGrid.C
Compiling Grid_IdentifyColourFields.C
Compiling Grid_<wbr>HydroShockTubesInitializeGrid.<wbr>C
Compiling Grid_<wbr>IdentifyShockSpeciesFields.C
Compiling Grid_<wbr>IdentifyGloverSpeciesFields.C
Compiling Grid_IdentifyNewSubgrids.C
Compiling Grid_IdentifyNewSubgridsSmall.<wbr>C
Compiling Grid_<wbr>IdentifyPhysicalQuantities.C
Compiling Grid_<wbr>IdentifyRadiativeTransferField<wbr>s.C
Compiling Grid_IdentifySpeciesFields.C
Compiling Grid_ImplosionInitializeGrid.C
Compiling Grid_InheritProperties.C
Compiling Grid_<wbr>InitializeGravitatingMassField<wbr>.C
Compiling Grid_<wbr>InitializeGravitatingMassField<wbr>Particles.C
Compiling Grid_InitializeUniformGrid.C
Compiling Grid_InterpolateAccelerations.<wbr>C
Compiling Grid_<wbr>InterpolateBoundaryFromParent.<wbr>C
Compiling Grid_InterpolateFieldValues.C
Compiling Grid_<wbr>InterpolateParticlePositions.C
Compiling Grid_<wbr>InterpolateParticlesToGrid.C
Compiling Grid_InterpolatePositions.C
Compiling Grid_<wbr>InterpolateStarParticlesToGrid<wbr>.C
Compiling Grid_KHInitializeGrid.C
Compiling Grid_KHInitializeGridRamp.C
Compiling Grid_MagneticFieldResetter.C
Compiling Grid_MirrorStarParticles.C
Compiling Grid_MoveAllParticles.C
Compiling Grid_MoveAllStars.C
Compiling Grid_MoveParticlesFOF.C
Compiling Grid_MoveSubgridParticlesFast.<wbr>C
Compiling Grid_MoveSubgridParticles.C
Compiling Grid_MoveSubgridStars.C
Compiling Grid_MultiSpeciesHandler.C
Compiling Grid_<wbr>MustRefineParticlesFlagFromLis<wbr>t.C
Compiling Grid_<wbr>MustRefineParticlesFlagInRegio<wbr>n.C
Compiling Grid_<wbr>NestedCosmologySimulationIniti<wbr>alizeGrid.C
Compiling Grid_NohInitializeGrid.C
Compiling Grid_<wbr>OneZoneFreefallTestInitializeG<wbr>rid.C
Compiling Grid_OutputAsParticleData.C
Compiling Grid_<wbr>OutputStarParticleInformation.<wbr>C
Compiling Grid_ParticleSplitter.C
Compiling Grid_PoissonSolver.C
Compiling Grid_PoissonSolverCGA.C
Compiling Grid_<wbr>PoissonSolverTestInitializeGri<wbr>d.C
Compiling Grid_PrepareBoundaryFluxes.C
Compiling Grid_PrepareFFT.C
Compiling Grid_PrepareGreensFunction.C
Compiling Grid_<wbr>PrepareGridDerivedQuantities.C
Compiling Grid_PrepareGrid.C
Compiling Grid_<wbr>PreparePeriodicGreensFunction.<wbr>C
Compiling Grid_PreparePotentialField.C
Compiling Grid_<wbr>PrepareRandomForcingNormalizat<wbr>ion.C
Compiling Grid_<wbr>PressurelessCollapseInitialize<wbr>.C
Compiling Grid_<wbr>ProjectSolutionToParentGrid.C
Compiling Grid_ProjectToPlane.C
Compiling Grid_ProjectToPlane2.C
Compiling Grid_<wbr>ProtostellarCollapseInitialize<wbr>Grid.C
Compiling Grid_PutSinkRestartInitialize.<wbr>C
Compiling Grid_<wbr>RadHydroConstTestInitializeGri<wbr>d.C
Compiling Grid_<wbr>RadHydroGreyMarshakWaveInitial<wbr>izeGrid.C
Compiling Grid_<wbr>RadHydroPulseTestInitializeGri<wbr>d.C
Compiling Grid_<wbr>RadHydroRadShockInitializeGrid<wbr>.C
Compiling Grid_<wbr>RadHydroStreamTestInitializeGr<wbr>id.C
Compiling Grid_<wbr>RadiationComputeDensities.C
Compiling Grid_<wbr>RadiatingShockInitializeGrid.C
Compiling Grid_ReadGrid.C
Compiling Grid_CosmologyReadParticles3D.<wbr>C
Compiling Grid_<wbr>ReadHierarchyInformationHDF5.C
Compiling Grid_ReadRandomForcingFields.C
Compiling Grid_<wbr>RemoveForcingFromBaryonFields.<wbr>C
Compiling Grid_RemoveParticle.C
Compiling Grid_RestoreEnergyConsistency.<wbr>C
Compiling Grid_ReturnFluxDims.C
Compiling Grid_ReturnGridInfo.C
Compiling Grid_<wbr>ReturnNumberOfStarParticles.C
Compiling Grid_ReturnParticleEntry.C
Compiling Grid_ReturnStarStatistics.C
Compiling Grid_<wbr>RHIonizationClumpInitializeGri<wbr>d.C
Compiling Grid_<wbr>RHIonizationSteepInitializeGri<wbr>d.C
Compiling Grid_<wbr>RHIonizationTestInitializeGrid<wbr>.C
Compiling Grid_<wbr>RotatingCylinderInitialize.C
Compiling Grid_<wbr>RotatingDiskInitializeGrid.C
Compiling Grid_RotatingSphereInitialize.<wbr>C
Compiling Grid_SedovBlastInitializeGrid.<wbr>C
Compiling Grid_<wbr>SedovBlastInitializeGrid3D.C
Compiling Grid_<wbr>SetExternalBoundaryValues.C
Compiling Grid_SetFlaggingField.C
Compiling Grid_<wbr>SetFlaggingFieldMultiRefineReg<wbr>ions.C
Compiling Grid_<wbr>SetFlaggingFieldStaticRegions.<wbr>C
Compiling Grid_<wbr>SetIsolatedPotentialBoundary.C
Compiling Grid_SetMinimumSupport.C
Compiling Grid_SetNewParticleIndex.C
Compiling Grid_<wbr>SetParticleMassFlaggingField.C
Compiling Grid_<wbr>ShearingBoxInitializeGrid.C
Compiling Grid_<wbr>ShearingBox2DInitializeGrid.C
Compiling Grid_<wbr>ShearingBoxStratifiedInitializ<wbr>eGrid.C
Compiling Grid_ShocksHandler.C
Compiling Grid_SolveForPotential.C
Compiling Grid_SolveHydroEquations.C
Compiling Grid_SolveOneZoneFreefall.C
Compiling Grid_SolveMHD_Li.C
Compiling Grid_SolvePPM_DE.C
Compiling Grid_SolveRadiativeCooling.C
Compiling Grid_<wbr>SolveRateAndCoolEquations.C
Compiling Grid_SolveRateEquations.C
Compiling Grid_SortParticlesByNumber.C
Compiling Grid_SortParticlesByType.C
Compiling Grid_<wbr>SphericalInfallGetProfile.C
Compiling Grid_<wbr>SphericalInfallInitializeGrid.<wbr>C
Compiling Grid_StarParticleHandler.C
Compiling Grid_<wbr>StratifiedMediumExplosionIniti<wbr>alize.C
Compiling Grid_<wbr>SupernovaRestartInitialize.C
Compiling Grid_<wbr>SubtractAccretedMassFromSphere<wbr>.C
Compiling Grid_TestGravityCheckResults.C
Compiling Grid_<wbr>TestGravityInitializeGrid.C
Compiling Grid_<wbr>TestGravityMotionInitializeGri<wbr>d.C
Compiling Grid_<wbr>TestGravitySphereCheckResults.<wbr>C
Compiling Grid_<wbr>TestGravitySphereInitializeGri<wbr>d.C
Compiling Grid_TestOrbitInitializeGrid.C
Compiling Grid_<wbr>TestStarParticleInitializeGrid<wbr>.C
Compiling Grid_<wbr>TracerParticleCreateParticles.<wbr>C
Compiling Grid_TracerParticleOutputData.<wbr>C
Compiling Grid_<wbr>TracerParticleSetVelocity.C
Compiling Grid_TransferSubgridParticles.<wbr>C
Compiling Grid_TransferSubgridStars.C
Compiling Grid_<wbr>TurbulenceSimulationInitialize<wbr>.C
Compiling Grid_UpdateParticlePosition.C
Compiling Grid_UpdateParticleVelocity.C
Compiling Grid_UpdateStarParticles.C
Compiling Grid_WriteCubeInterpolate.C
Compiling Grid_WriteCube.C
Compiling Grid_WriteGridInterpolate.C
Compiling Grid_WriteGrid.C
Compiling Grid_WriteGridX.C
Compiling Grid_<wbr>WriteHierarchyInformationHDF5.<wbr>C
Compiling Grid_WriteMemoryMap.C
Compiling Grid_WriteNewMovieData.C
Compiling Grid_<wbr>WriteNewMovieDataSeparateParti<wbr>cles.C
Compiling Grid_WriteStuff.C
Compiling Grid_WriteTaskMap.C
Compiling Grid_<wbr>ZeldovichPancakeInitializeGrid<wbr>.C
Compiling Grid_ZeroSolutionUnderSubgrid.<wbr>C
Compiling Grid_ZeusSolver.C
Compiling Grid_xEulerSweep.C
Compiling Grid_yEulerSweep.C
Compiling Grid_zEulerSweep.C
Compiling Group_ReadAllData.C
Compiling Group_ReadDataHierarchy.C
Compiling Group_WriteAllData.C
Compiling Group_WriteDataHierarchy.C
Compiling h5utilities.C
Compiling HilbertCurve3D.C
Compiling Hierarchy_<wbr>DeleteHierarchyEntry.C
Compiling HydroShockTubesInitialize.C
Compiling ibm_fft64.F
Compiling ibm_st1_fft64.F
Compiling I_ColumnFormat.C
Compiling IdentifyNewSubgridsBySignature<wbr>.C
Compiling ImplosionInitialize.C
Compiling InexactNewton.C
Compiling InexactNewton_constructor.C
Compiling InexactNewton_destructor.C
Compiling InexactNewton_<wbr>InexactNewtonForce.C
Compiling InexactNewton_<wbr>LinesearchStepSize.C
Compiling InexactNewton_Solve.C
Compiling InitializeCloudyCooling.C
Compiling InitializeEquilibriumCoolData.<wbr>C
Compiling InitializeGadgetEquilibriumCoo<wbr>lData.C
Compiling InitializeLocal.C
Compiling InitializeLymanWernerTable.C
Compiling InitializeHM12Photorates.C
Compiling InitializeMovieFile.C
Compiling InitializeNew.C
Compiling InitializePythonInterface.C
Compiling InitializeRadiationFieldData.C
Compiling InitializeRadiativeTransferSpe<wbr>ctrumTable.C
Compiling InitializeRateData.C
Compiling InitialLoadBalanceRootGrids.C
Compiling init_random_seed.F
Compiling interp1d.F
Compiling interp2d.F
Compiling interp3d.F
Compiling interpolate.F
Compiling InterpretCommandLine.C
Compiling inteuler.F
Compiling intlgrg.F
Compiling int_lin3d.F
Compiling intrmp.F
Compiling int_spline.F
Compiling intpos.F
Compiling intprim.F
Compiling intvar.F
Compiling Isdigit.C
Compiling KHInitialize.C
Compiling LevelHierarchy_AddLevel.C
Compiling lgrg.F
Compiling ListIO.C
Compiling LoadBalanceHilbertCurve.C
Compiling LoadBalanceHilbertCurveRootGri<wbr>ds.C
Compiling LoadBalanceSimulatedAnnealing.<wbr>C
Compiling MagneticFieldResetter.C
Compiling mbh_maker.C
Compiling mcooling.F
Compiling MakeFieldConservative.C
Compiling MemoryAllocationRoutines.C
Compiling MemoryPoolRoutines.C
Compiling MersenneTwister.C
Compiling mg_calc_defect.F
Compiling mg_prolong2.F
Compiling mg_prolong.F
Compiling mg_relax.F
Compiling mg_restrict.F
Compiling mkl_st1.F90
Compiling Mpich_V1_Dims_create.c
Compiling multi_cool.F
Compiling MultigridSolver.C
Compiling mused.C
Compiling NestedCosmologySimulationIniti<wbr>alize.C
Compiling ngpinterp.F
Compiling ngp_deposit.F
Compiling ngp_deposit_c.c
Compiling NohInitialize.C
Compiling nr_1d.F90
Compiling nr_2d.F90
Compiling nr_3d.F90
Compiling nr_st1.F90
Compiling NullProblem.C
Compiling OneZoneFreefallTestInitialize.<wbr>C
Compiling OutputAsParticleData.C
Compiling OutputCoolingTimeOnly.C
Compiling OutputDustTemperatureOnly.C
Compiling OutputFromEvolveLevel.C
Compiling OutputLevelInformation.C
Compiling OutputPotentialFieldOnly.C
Compiling OutputSmoothedDarkMatterOnly.C
Compiling P_ColumnFormat.C
Compiling ParticleMergeRoutines.C
Compiling ParticleSplitter.C
Compiling performance.C
Compiling pgas2d_dual.F
Compiling pgas2d.F
Compiling PoissonSolverTestInitialize.C
Compiling pop3_color_maker.F
Compiling pop3_color_maker_c.c
Compiling pop3_maker.F
Compiling pop3_properties.F
Compiling power_of_2.F
Compiling prefort2.F
Compiling PrepareDensityField.C
Compiling PrepareGravitatingMassField.C
Compiling PrepareIsolatedGreensFunction.<wbr>C
Compiling PressurelessCollapseInitialize<wbr>.C
Compiling ProblemType.C
Compiling ProblemType_RotatingCylinder.C
Compiling ProblemType_<wbr>CollapsingCoolingCloud.C
Compiling ProblemType_ExplodingCloud.C
Compiling ProblemType_<wbr>MagneticReconnection.C
Compiling ProblemType_AgoraRestart.C
Compiling ProcMap.C
Compiling project.F
Compiling projectbool.F
Compiling ProjectToPlane.C
Compiling ProjectToPlane2.C
Compiling projplane.F
Compiling prolong.F
Compiling prolong_tsc.F
Compiling ProtostellarCollapseInitialize<wbr>.C
Compiling ProtoSubgrid_AcceptableGrid.C
Compiling ProtoSubgrid_CleanUp.C
Compiling ProtoSubgrid_<wbr>ComputeSecondDerivative.C
Compiling ProtoSubgrid_ComputeSignature.<wbr>C
Compiling ProtoSubgrid_constructor.C
Compiling ProtoSubgrid_<wbr>CopyFlaggedZonesFromGrid.C
Compiling ProtoSubgrid_CopyToNewSubgrid.<wbr>C
Compiling ProtoSubgrid_<wbr>FindGridsByZeroSignature.C
Compiling ProtoSubgrid_<wbr>LargeAxisRatioCheck.C
Compiling ProtoSubgrid_<wbr>ReturnNthLongestDimension.C
Compiling ProtoSubgrid_<wbr>ShrinkToMinimumSize.C
Compiling PutSinkRestartInitialize.C
Compiling QuickSortAndDrag.C
Compiling RadHydroConstTestInitialize.C
Compiling RadHydroGreyMarshakWaveInitial<wbr>ize.C
Compiling RadHydroPulseTestInitialize.C
Compiling RadHydroRadShockInitialize.C
Compiling RadHydroStreamTestInitialize.C
Compiling RadiationGetUnits.C
Compiling RadiatingShockInitialize.C
Compiling RadiationFieldCalculateRates.C
Compiling RadiationFieldLymanWernerTable<wbr>.C
Compiling RadiationFieldUpdate.C
Compiling ReadAllData.C
Compiling ReadAttr.C
Compiling ReadEvolveRefineFile.C
Compiling read_bt.C
Compiling read_bv.C
Compiling ReadDataHierarchy.C
Compiling ReadFile.C
Compiling ReadGridFile.C
Compiling ReadIntFile.C
Compiling ReadMetalCoolingRates.C
Compiling ReadMetalCoolingRatios.C
Compiling ReadParameterFile.C
Compiling ReadRadiationData.C
Compiling ReadStarParticleData.C
Compiling ReadUnits.C
Compiling RebuildHierarchy.C
Compiling RecalibrateAccretingMass.C
Compiling RecalibrateMBHFeedbackThermalR<wbr>adius.C
Compiling ReduceFragmentation.C
Compiling Reduce_Times.C
Compiling remap.F
Compiling ReportMemoryUsage.C
Compiling ReturnWallTime.C
Compiling RHIonizationClumpInitialize.C
Compiling RHIonizationSteepInitialize.C
Compiling RHIonizationTestInitialize.C
Compiling rotate2d.F
Compiling rotate3d.F
Compiling RotatingCylinderInitialize.C
Compiling RotatingDiskInitialize.C
Compiling RotatingSphereInitialize.C
Compiling s66_st1.F90
Compiling s90_st1.F90
Compiling SearchUtilities.C
Compiling SedovBlastInitialize.C
Compiling select_fft.F90
Compiling SetBoundaryConditions.C
Compiling SetDefaultGlobalValues.C
Compiling SetLevelTimeStep.C
Compiling SetEvolveRefineRegion.C
Compiling sgi_st1_fft64.F90
Compiling ShearingBoxInitialize.C
Compiling ShearingBox2DInitialize.C
Compiling ShearingBoxStratifiedInitializ<wbr>e.C
Compiling ShellSortAndDrag.C
Compiling ShockInABoxInitialize.C
Compiling ShockPoolInitialize.C
Compiling sink_maker.C
Compiling smooth_deposit.F
Compiling smooth_deposit_c.c
Compiling smooth.F
Compiling solve_cool.F
Compiling solve_rate.F
Compiling solve_rate_cool.F
Compiling SortCompareFunctions.C
Compiling SphericalInfallInitialize.C
Compiling StarListRoutines.C
Compiling StarParticleAccretion.C
Compiling StarParticleAddFeedback.C
Compiling StarParticleCountOnly.C
Compiling StarParticleDeath.C
Compiling StarParticleFinalize.C
Compiling StarParticleFindAll.C
Compiling StarParticleInitialize.C
Compiling StarParticleMergeNew.C
Compiling StarParticleMergeMBH.C
Compiling StarParticlePopIII_<wbr>IMFInitialize.C
Compiling StarParticleSetRefinementLevel<wbr>.C
Compiling StarParticleSubtractAccretedMa<wbr>ss.C
Compiling StarRoutines.C
Compiling Star_Accrete.C
Compiling Star_AccreteAngularMomentum.C
Compiling Star_ActivateNewStar.C
Compiling Star_ApplyFeedbackTrue.C
Compiling Star_<wbr>AssignAccretedAngularMomentum.<wbr>C
Compiling Star_AssignFinalMassFromIMF.C
Compiling Star_<wbr>CalculateFeedbackParameters.C
Compiling Star_CalculateMassAccretion.C
Compiling Star_CalculateMassLoss.C
Compiling Star_ComputePhotonRates.C
Compiling Star_DeleteCopyInGridGlobal.C
Compiling Star_DeleteParticle.C
Compiling Star_DisableParticle.C
Compiling Star_FindFeedbackSphere.C
Compiling Star_HitEndpoint.C
Compiling Star_IsARadiationSource.C
Compiling Star_MirrorToParticle.C
Compiling Star_MultiplyAccretionRate.C
Compiling Star_<wbr>RemoveMassFromStarAfterFeedbac<wbr>k.C
Compiling Star_SetFeedbackFlag.C
Compiling Star_SphereContained.C
Compiling Star_<wbr>SubtractAccretedMassFromCell.C
Compiling star_feedback_pn_snia.F
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Compiling star_maker8.C
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Compiling star_maker_h2reg.F
Compiling star_maker_ssn.F
Compiling StratifiedMediumExplosionIniti<wbr>alize.C
Compiling SupernovaRestartInitialize.C
Compiling SysMkdir.C
Compiling TestGravityCheckResults.C
Compiling TestGravityInitialize.C
Compiling TestGravityMotion.C
Compiling TestGravitySphereCheckResults.<wbr>C
Compiling TestGravitySphereInitialize.C
Compiling TestOrbitInitialize.C
Compiling TestStarParticleInitialize.C
Compiling TracerParticleCreation.C
Compiling TransposeRegionOverlap.C
Compiling tscint1d.F
Compiling tscint2d.F
Compiling tscint3d.F
Compiling TurbulenceSimulationInitialize<wbr>.C
Compiling turboinit.F
Compiling twoshock.F
Compiling UpdateFromFinerGrids.C
Compiling UpdateLocalDatabase.C
Compiling UpdateParticlePositions.C
Compiling utilities.F
Compiling uuid.C
Compiling uuid/clear.c
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Compiling uuid/copy.c
Compiling uuid/gen_uuid.c
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Compiling wall_clock.c
Compiling WavePoolInitialize.C
Compiling wrapper1d.F90
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Compiling WriteAllDataCubes.C
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Compiling write_bt.C
Compiling write_bv.C
Compiling WriteConfigure.C
Compiling WriteDataCubes.C
Compiling WriteDataHierarchy.C
Compiling WriteHDF5HierarchyFile.C
Compiling WriteMemoryMap.C
Compiling WriteParameterFile.C
Compiling WriteRadiationData.C
Compiling WriteStarParticleData.C
Compiling WriteStreamData.C
Compiling WriteStringAttr.C
Compiling WriteTaskMap.C
Compiling WriteTracerParticleData.C
Compiling WriteUnits.C
Compiling ZeldovichPancakeInitialize.C
Compiling ZeusUtilities.C
Compiling ZeusSource.C
Compiling Zeus_xTransport.C
Compiling Zeus_yTransport.C
Compiling Zeus_zTransport.C
Compiling Grid_MHD_Diagnose.C
Compiling Grid_MHDCTEnergyToggle.C
Compiling MHDBlastInitialize.C
Compiling Grid_MHDBlastInitializeGrid.C
Compiling Grid_MHD_ProjectFace.C
Compiling Grid_ClearAvgElectricField.C
Compiling ExternalBoundary_<wbr>SetMagneticBoundary.C
Compiling mhd_dt.F
Compiling Grid_MHD_UpdateMagneticField.C
Compiling Grid_MHDOrszagTangInitGrid.C
Compiling Grid_MHD_SetupDims.C
Compiling MHDOrszagTangInit.C
Compiling MHDCT_ParameterJuggle.C
Compiling MHDCTSetupFieldLabels.C
Compiling mhd_li.F
Compiling mhd_li_ms.F
Compiling Grid_CenterMagneticField.C
Compiling Grid_ComputeElectricField.C
Compiling Grid_MHD_Curl.C
Compiling pde1dsolver_mhd.F
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Compiling riemann_mhd.F
Compiling mhd_hlld_isothermal.F
Compiling mhd_hlld_adiabatic.F
Compiling DebugTools.C
Compiling Grid_MHD_CID.C
Compiling Grid_MHD_ProlongAllocate.C
Compiling mhd_interpolate.F
Compiling Grid_MHD_SendOldFineGrids.C
Compiling StochasticForcing_<wbr>CommunicationBroadcastFlags.C
Compiling StochasticForcing_<wbr>CommunicationBroadcastSpectrum<wbr>.C
Compiling StochasticForcing_constructor.<wbr>C
Compiling StochasticForcing_destructor.C
Compiling StochasticForcing_Evolve.C
Compiling StochasticForcing_Init.C
Compiling StochasticForcing_<wbr>GaussDeviate.C
Compiling StochasticForcing_<wbr>ReadAndWrite.C
Compiling ComputeStochasticForcing.C
Compiling Grid_FTStochasticForcing.C
Compiling DrivenFlowInitialize.C
Compiling Grid_DrivenFlowInitializeGrid.<wbr>C
Compiling Grid_Phases.C
Compiling CommunicationLoadBalancePhoton<wbr>Grids.C
Compiling CommunicationNonblockingRoutin<wbr>es.C
Compiling CommunicationReceiverPhotons.C
Compiling CommunicationSyncNumberOfPhoto<wbr>ns.C
Compiling CommunicationTransferPhotons.C
Compiling CreateSourceClusteringTree.C
Compiling DeletePhotonPackage.C
Compiling DeleteRadiationSource.C
Compiling EvolvePhotons.C
Compiling FindCrossSection.C
Compiling FindRootGrid.C
Compiling FindSuperSource.C
Compiling FindSuperSourceByPosition.C
Compiling FLDCorrectForImpulses.C
Compiling Grid_AddH2Dissociation.C
Compiling Grid_<wbr>AddH2DissociationFromSources.C
Compiling Grid_<wbr>AddH2DissociationFromTree.C
Compiling Grid_AddRadiationImpulse.C
Compiling Grid_<wbr>AddRadiationPressureAccelerati<wbr>on.C
Compiling Grid_<wbr>AllocateInterpolatedRadiation.<wbr>C
Compiling Grid_CheckSubgridMarker.C
Compiling Grid_<wbr>CommunicationSendPhotonPackage<wbr>s.C
Compiling Grid_<wbr>CommunicationSendSubgridMarker<wbr>.C
Compiling Grid_ComputePhotonTimestep.C
Compiling Grid_ComputePhotonTimestepHII.<wbr>C
Compiling Grid_ComputePhotonTimestepTau.<wbr>C
Compiling Grid_<wbr>ConvertToCellCenteredRadiation<wbr>.C
Compiling Grid_<wbr>CorrectRadiationIncompleteness<wbr>.C
Compiling Grid_CreateEmissivityLW.C
Compiling Grid_DeleteEmissivity.C
Compiling Grid_DeletePhotonPackages.C
Compiling Grid_<wbr>DetectIonizationFrontApprox.C
Compiling Grid_ElectronFractionEstimate.<wbr>C
Compiling Grid_ExtraFunction.C
Compiling Grid_FinalizeRadiationFields.C
Compiling Grid_FindPhotonNewGrid.C
Compiling Grid_<wbr>FlagCellsToBeRefinedByOpticalD<wbr>epth.C
Compiling Grid_<wbr>IdentifyRadiationPressureField<wbr>s.C
Compiling Grid_<wbr>InitializeRadiativeTransferFie<wbr>lds.C
Compiling Grid_InitializeSource.C
Compiling Grid_<wbr>InterpolateRadiationFromParent<wbr>.C
Compiling Grid_<wbr>MergePausedPhotonPackages.C
Compiling Grid_<wbr>RegridPausedPhotonPackage.C
Compiling Grid_MoveAllPhotonPackages.C
Compiling Grid_PhotonPeriodicBoundary.C
Compiling Grid_PhotonTestInitializeGrid.<wbr>C
Compiling Grid_<wbr>PhotonTestRestartInitializeGri<wbr>d.C
Compiling Grid_PhotonSortLinkedLists.C
Compiling Grid_ReassignSuperSources.C
Compiling Grid_ReturnSubgridMarker.C
Compiling Grid_<wbr>SetSubgridMarkerFromParent.C
Compiling Grid_<wbr>SetSubgridMarkerFromSibling.C
Compiling Grid_<wbr>SetSubgridMarkerFromSubgrid.C
Compiling Grid_<wbr>SubgridMarkerPostParallel.C
Compiling Grid_Shine.C
Compiling Grid_TransportPhotonPackages.C
Compiling Grid_WalkPhotonPackage.C
Compiling LinkedListRoutines.C
Compiling PhotonPackageRoutines.C
Compiling PhotonTestInitialize.C
Compiling PhotonTestRestartInitialize.C
Compiling RadiativeTransferCallFLD.C
Compiling RadiativeTransferComputeTimest<wbr>ep.C
Compiling RadiativeTransferHealpixRoutin<wbr>es.C
Compiling RadiativeTransferLoadBalanceRe<wbr>vert.C
Compiling RadiativeTransferInitialize.C
Compiling RadiativeTransferPrepare.C
Compiling RadiativeTransferReadParameter<wbr>s.C
Compiling RadiativeTransferWriteParamete<wbr>rs.C
Compiling RadiativeTransferMoveLocalPhot<wbr>ons.C
Compiling ReadPhotonSources.C
Compiling ReadRadiativeTransferSpectrumT<wbr>able.C
Compiling ReassignSuperSources.C
Compiling RestartPhotons.C
Compiling ReturnValuesFromSpectrumTable.<wbr>C
Compiling SetSubgridMarker.C
Compiling SplitPhotonPackage.C
Compiling StarParticleRadTransfer.C
Compiling TemperatureFieldToolsForCompto<wbr>nHeating.C
Compiling WritePhotonSources.C
Compiling hydro_rk/<wbr>ModifiedBesselFunctions.C
Compiling hydro_rk/AGNDiskInitialize.C
Compiling hydro_rk/Collapse1DInitialize.<wbr>C
Compiling hydro_rk/Collapse3DInitialize.<wbr>C
Compiling hydro_rk/<wbr>ComputeDednerWaveSpeeds.C
Compiling hydro_rk/EvolveLevel_RK2.C
Compiling hydro_rk/GalaxyDiskInitialize.<wbr>C
Compiling hydro_rk/Grid_AddSelfGravity.C
Compiling hydro_rk/Grid_AddViscosity.C
Compiling hydro_rk/Grid_<wbr>AGNDiskInitializeGrid.C
Compiling hydro_rk/Grid_<wbr>Collapse1DInitializeGrid.C
Compiling hydro_rk/Grid_<wbr>Collapse3DInitializeGrid.C
Compiling hydro_rk/Grid_<wbr>CopyOldBaryonFieldToBaryonFiel<wbr>d.C
Compiling hydro_rk/Grid_<wbr>GalaxyDiskInitializeGrid.C
Compiling hydro_rk/Grid_Hydro3D.C
Compiling hydro_rk/Grid_<wbr>ReturnHydroRKPointers.C
Compiling hydro_rk/Grid_<wbr>ReturnOldHydroRKPointers.C
Compiling hydro_rk/Grid_RungeKutta2_<wbr>1stStep.C
Compiling hydro_rk/Grid_RungeKutta2_<wbr>2ndStep.C
Compiling hydro_rk/Grid_<wbr>SaveSubgridFluxes.C
Compiling hydro_rk/Grid_SetFloor.C
Compiling hydro_rk/Grid_<wbr>SetNumberOfColours.C
Compiling hydro_rk/Grid_SourceTerms.C
Compiling hydro_rk/Grid_<wbr>TurbulenceInitializeGrid.C
Compiling hydro_rk/Grid_UpdatePrim.C
Compiling hydro_rk/Grid_ZeroFluxes.C
Compiling hydro_rk/Grid_<wbr>PrepareVelocityNormalization.C
Compiling hydro_rk/Grid_<wbr>PrepareAlfvenVelocityNormaliza<wbr>tion.C
Compiling hydro_rk/Grid_<wbr>NormalizeVelocities.C
Compiling hydro_rk/Grid_<wbr>NormalizeMagneticFields.C
Compiling hydro_rk/Turbulence_Generator.<wbr>C
Compiling hydro_rk/HLL_PLM.C
Compiling hydro_rk/HLL_PPM.C
Compiling hydro_rk/HLLC_PLM.C
Compiling hydro_rk/HydroLine.C
Compiling hydro_rk/HydroSweepX.C
Compiling hydro_rk/HydroSweepY.C
Compiling hydro_rk/HydroSweepZ.C
Compiling hydro_rk/LLF_PLM.C
Compiling hydro_rk/LLF_Zero.C
Compiling hydro_rk/LLF_Zero_MHD.C
Compiling hydro_rk/Rec_PLM.C
Compiling hydro_rk/Rec_ConsPLM.C
Compiling hydro_rk/Rec_PPM.C
Compiling hydro_rk/Riemann_HLL.C
Compiling hydro_rk/Riemann_HLLC.C
Compiling hydro_rk/Riemann_LLF.C
Compiling hydro_rk/TurbulenceInitialize.<wbr>C
Compiling hydro_rk/<wbr>CollapseMHD3DInitialize.C
Compiling hydro_rk/Grid_<wbr>AddAmbipolarDiffusion.C
Compiling hydro_rk/Grid_AddResistivity.C
Compiling hydro_rk/Grid_<wbr>CollapseMHD3DInitializeGrid.C
Compiling hydro_rk/Grid_<wbr>MHD1DTestInitializeGrid.C
Compiling hydro_rk/Grid_<wbr>MHD1DTestWavesInitializeGrid.C
Compiling hydro_rk/Grid_<wbr>MHD2DTestInitializeGrid.C
Compiling hydro_rk/Grid_<wbr>MHD3DTestInitializeGrid.C
Compiling hydro_rk/Grid_MHD3D.C
Compiling hydro_rk/Grid_MHDRK2_1stStep.C
Compiling hydro_rk/Grid_MHDRK2_2ndStep.C
Compiling hydro_rk/Grid_MHDSourceTerms.C
Compiling hydro_rk/Grid_<wbr>MHDTurbulenceInitializeGrid.C
Compiling hydro_rk/Grid_<wbr>MHDDecayingRandomFieldInitiali<wbr>zeGrid.C
Compiling hydro_rk/Grid_<wbr>ReduceWindBoundary.C
Compiling hydro_rk/Grid_<wbr>SaveMHDSubgridFluxes.C
Compiling hydro_rk/Grid_UpdateMHDPrim.C
Compiling hydro_rk/Grid_<wbr>UpdateElectronDensity.C
Compiling hydro_rk/HLL_PLM_MHD.C
Compiling hydro_rk/LLF_PLM_MHD.C
Compiling hydro_rk/HLL_PPM_MHD.C
Compiling hydro_rk/HLLD_PLM_MHD.C
Compiling hydro_rk/HLLD_Zero_MHD.C
Compiling hydro_rk/MHD1DTestInitialize.C
Compiling hydro_rk/<wbr>MHD1DTestWavesInitialize.C
Compiling hydro_rk/MHD2DTestInitialize.C
Compiling hydro_rk/MHD3DTestInitialize.C
Compiling hydro_rk/MHDLine.C
Compiling hydro_rk/MHDSweepX.C
Compiling hydro_rk/MHDSweepY.C
Compiling hydro_rk/MHDSweepZ.C
Compiling hydro_rk/<wbr>MHDTurbulenceInitialize.C
Compiling hydro_rk/<wbr>MHDDecayingRandomFieldInitiali<wbr>ze.C
Compiling hydro_rk/Riemann_HLL_MHD.C
Compiling hydro_rk/Riemann_HLLD_MHD.C
Compiling hydro_rk/Riemann_LLF_MHD.C
Linking enzo executable. Type cat out.compile in case it fails.
make: *** [Makefile:137: enzo.exe] Error 1
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