[yt-users] Cython discrepancy in yt install from source

[Nathan Goldbaum]

No, I haven't seen that error before.

I'll be heading into the office shortly and will update the install script
when I get in. If you can't wait on me, you could try updating it yourself
to download the latest cython release from e.g. pypi.

By the way, do you happen to be using the latest version of MacOS? In that
case building rockstar from source will not work:

https://github.com/yt-project/yt/issues/1289

Nathan

On Mon, Jun 19, 2017 at 8:32 AM Carla Bernhardt <carla.j.bernhardt at gmail.com>
wrote:

> Hi Nathan,
>
> I did try running with rockstar install enabled, INST_CONDA=1 and
> INST_YT_SOURCE=1 and I got this strange error
> <https://pastebin.com/EWXsbzCx> that I don't have the file
> "libisl.so.10". Any suggestions on that? I wasn't able to find anything
> helpful about this online. I just want to get a working version of yt going
> with rockstar enabled, it doesn't have to be from source.
>
> Cheers,
> Carla
>
> 2017-06-19 15:17 GMT+02:00 Nathan Goldbaum <nathan12343 at gmail.com>:
>
>> Hi Carla,
>>
>> I think we need to update the install script for the case with
>> INST_CONDA=0. For now you should be able to set INST_CONDA=1 and still get
>> rockstar setup, we made it so you can use rockstar with a conda-based
>> install a while back.
>>
>> Nathan
>>
>> On Mon, Jun 19, 2017 at 6:34 AM Carla Bernhardt <
>> carla.j.bernhardt at gmail.com> wrote:
>>
>>> Dear yt-users,
>>>
>>> I am trying to compile yt with rockstar enabled, so I am having yt
>>> install itself from source. The code downloads Cython 0.23.5, but later
>>> then requires Cython 0.24+. I tried downloading Cython-0.25.2, but this
>>> failed (I probably did it wrong). What do I need to change to make the
>>> install_script.sh work with Cython?
>>>
>>> Here is a piece of the failure report I got:
>>>
>>> Installing GitPython-2.1.3
>>> Installing sympy-1.0
>>> Building Rockstar
>>> Installing yt
>>> ********************************************
>>>         FAILURE REPORT:
>>> ********************************************
>>>
>>>   File
>>> "/home/hd/hd_hd/hd_ri129/yt-x86_64/lib/python3.5/site-packages/setuptools-20.6.7-py3.5.egg/setuptools/command/sdist.py",
>>> line 132, in add_defaults
>>>   File
>>> "/home/hd/hd_hd/hd_ri129/yt-x86_64/lib/python3.5/distutils/cmd.py", line
>>> 299, in get_finalized_command
>>>     cmd_obj.ensure_finalized()
>>>   File
>>> "/home/hd/hd_hd/hd_ri129/yt-x86_64/lib/python3.5/distutils/cmd.py", line
>>> 107, in ensure_finalized
>>>     self.finalize_options()
>>>   File "setup.py", line 308, in finalize_options
>>>     cython.__version__)
>>> RuntimeError: Building yt from source requires Cython 0.24 or newer but
>>> Cython 0.23.5 is installed. Please update Cython using the appropriate
>>> package manager for your python environment.
>>>
>>> ********************************************
>>> ********************************************
>>>
>>> Cheers,
>>> Carla Bernhardt
>>> PhD Student
>>> ZAH Institut für Theoretische Astrophysik
>>> Universität Heidelberg
>>>
>>> _______________________________________________
>>> yt-users mailing list
>>> yt-users at lists.spacepope.org
>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>>
>>
>> _______________________________________________
>> yt-users mailing list
>> yt-users at lists.spacepope.org
>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>
>>
> _______________________________________________
> yt-users mailing list
> yt-users at lists.spacepope.org
> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20170619/ff214039/attachment-0001.htm>