[yt-users] yt errors

[Nathan Goldbaum]

This error happens when yt can't find a field for a given dataset. In this
case it's looking for a field named 'absReynoldsStress'. It reports it with
the funny spelling "('all', 'absReynoldsStrss')" because it's guessing that
it's a particle field.

Since that isn't a field in your FLASH dataset (unless you've modified
FLASH to output such a field), and it's not defined as a derived field in
that script or in yt itself, yt isn't able to generate it.

Do you have an 'absReynoldsStress' derived field defined somewhere else?

-Nathan

On Sun, Feb 7, 2016 at 9:53 PM, tazkera haque <h.tazkera at gmail.com> wrote:

> Hi, can anyone please check my script and the corresponding error?
>
> On Sun, Feb 7, 2016 at 1:29 PM, tazkera haque <h.tazkera at gmail.com> wrote:
>
>> thanks very much everyone. solves my problem.
>>
>> On Sun, Feb 7, 2016 at 11:15 AM, Kacper Kowalik <xarthisius.kk at gmail.com>
>> wrote:
>>
>>> On 02/06/2016 09:03 PM, tazkera haque wrote:
>>>
>>>> Hi , thanks very much for the helps. but I happen to get the errors
>>>> still
>>>> though I did the exact same things as suggested. I am attaching the
>>>> summary
>>>> and error.
>>>>
>>>
>>> Hi Tazkera,
>>>
>>> clean.sh unfortunately doesn't remove cythonized modules (.c files). You
>>> can either manually remove the offending file
>>> (yt/geometry/grid_container.c) or use hg purge. In order to do the latter
>>> you'll need to add the following to $HOME/.hgrc:
>>>
>>> [extensions]
>>> hgext.purge =
>>>
>>> Then try:
>>>
>>> $ cd /work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/
>>> $ hg purge --all
>>> $ python setup.py build_ext -i  # (or python setup.py develop)
>>>
>>> Cheers,
>>> Kacper
>>>
>>>
>>> On Sat, Feb 6, 2016 at 9:05 PM, Nathan Goldbaum <nathan12343 at gmail.com>
>>>> wrote:
>>>>
>>>> It looks like yt's C extensions need to be recompiled. Can you activate
>>>>> the yt environment and do the following:
>>>>>
>>>>> $ cd /work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/
>>>>> $ bash ./clean.sh
>>>>> $ hg pull
>>>>> $ hg update
>>>>> $ python setup.py develop
>>>>>
>>>>> If that doesn't work, can you reply with the output of "hg summary", as
>>>>> well as the error that you see?
>>>>>
>>>>> Hope that helps,
>>>>>
>>>>> Nathan
>>>>>
>>>>> On Sat, Feb 6, 2016 at 7:25 PM, tazkera haque <h.tazkera at gmail.com>
>>>>> wrote:
>>>>>
>>>>> Hi , I am trying to run a python file with yt packages on STAMPEDE. and
>>>>>> getting some errors each time. I think the error is due to some
>>>>>> installation error of yt at first place. can you please look at both
>>>>>> my
>>>>>> code and error and send me the solutions to solve the problem. both
>>>>>> the
>>>>>> files are attached for your convenience.
>>>>>>
>>>>>> regards
>>>>>> Tazkera
>>>>>>
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