[yt-users] yt errors

tazkera haque h.tazkera at gmail.com
Sun Feb 7 19:53:51 PST 2016


Hi, can anyone please check my script and the corresponding error?

On Sun, Feb 7, 2016 at 1:29 PM, tazkera haque <h.tazkera at gmail.com> wrote:

> thanks very much everyone. solves my problem.
>
> On Sun, Feb 7, 2016 at 11:15 AM, Kacper Kowalik <xarthisius.kk at gmail.com>
> wrote:
>
>> On 02/06/2016 09:03 PM, tazkera haque wrote:
>>
>>> Hi , thanks very much for the helps. but I happen to get the errors still
>>> though I did the exact same things as suggested. I am attaching the
>>> summary
>>> and error.
>>>
>>
>> Hi Tazkera,
>>
>> clean.sh unfortunately doesn't remove cythonized modules (.c files). You
>> can either manually remove the offending file
>> (yt/geometry/grid_container.c) or use hg purge. In order to do the latter
>> you'll need to add the following to $HOME/.hgrc:
>>
>> [extensions]
>> hgext.purge =
>>
>> Then try:
>>
>> $ cd /work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/
>> $ hg purge --all
>> $ python setup.py build_ext -i  # (or python setup.py develop)
>>
>> Cheers,
>> Kacper
>>
>>
>> On Sat, Feb 6, 2016 at 9:05 PM, Nathan Goldbaum <nathan12343 at gmail.com>
>>> wrote:
>>>
>>> It looks like yt's C extensions need to be recompiled. Can you activate
>>>> the yt environment and do the following:
>>>>
>>>> $ cd /work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/
>>>> $ bash ./clean.sh
>>>> $ hg pull
>>>> $ hg update
>>>> $ python setup.py develop
>>>>
>>>> If that doesn't work, can you reply with the output of "hg summary", as
>>>> well as the error that you see?
>>>>
>>>> Hope that helps,
>>>>
>>>> Nathan
>>>>
>>>> On Sat, Feb 6, 2016 at 7:25 PM, tazkera haque <h.tazkera at gmail.com>
>>>> wrote:
>>>>
>>>> Hi , I am trying to run a python file with yt packages on STAMPEDE. and
>>>>> getting some errors each time. I think the error is due to some
>>>>> installation error of yt at first place. can you please look at both my
>>>>> code and error and send me the solutions to solve the problem. both the
>>>>> files are attached for your convenience.
>>>>>
>>>>> regards
>>>>> Tazkera
>>>>>
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>>>>>
>>>>>
>>>>>
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>>>
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