[yt-users] yt update and error

tazkera haque h.tazkera at gmail.com
Fri Aug 26 11:25:17 PDT 2016 

Thanks Nathan, installed it.

On Fri, Aug 26, 2016 at 12:50 AM, Nathan Goldbaum <nathan12343 at gmail.com>
wrote:

>
>
> On Thu, Aug 25, 2016 at 11:32 PM, Nathan Goldbaum <nathan12343 at gmail.com>
> wrote:
>
>> It seems you have an old version of setuptools, do "pip install -U
>> setuptools" and "pip install -U pip", then try "python setup.py develop"
>> again. You might also need to update cython.
>>
>> If this is getting too complicated, you can always re-run the latest
>> version of the install script from https://bitbucket.org/yt_analy
>> sis/yt/src/yt/doc/install_script.sh in e.g. /work/03858/thaque56/sw/yt-3.3
>> and use that yt installation instead.
>>
>>
> Of course you probably want the "raw" download link:
> https://bitbucket.org/yt_analysis/yt/raw/yt/doc/install_script.sh
>
>
>> On Thu, Aug 25, 2016 at 11:25 PM, tazkera haque <h.tazkera at gmail.com>
>> wrote:
>>
>>> and I did
>>>
>>> $ cd /work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/
>>> $ hg --config extensions.purge= purge --all yt
>>> $ hg pull https://bitbucket.org/yt_analysis/yt
>>> $ hg update stable
>>> $ python setup.py develop
>>>
>>> On Fri, Aug 26, 2016 at 12:25 AM, tazkera haque <h.tazkera at gmail.com>
>>> wrote:
>>>
>>>> HI Nathan ,
>>>>
>>>> Thanks for your help but now it gives me a whole bunch of errors:
>>>>
>>>> (yt-x86_64)login2.stampede(6)$ python setup.py develop
>>>> Unable to find pgen, not compiling formal grammar.
>>>> Traceback (most recent call last):
>>>>   File "setup.py", line 391, in <module>
>>>>     ext_modules=cython_extensions + extensions,
>>>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/lib/python2.7/distutils/core.py",
>>>> line 111, in setup
>>>>     _setup_distribution = dist = klass(attrs)
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 268, in
>>>> __init__
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 313, in
>>>> fetch_build_eggs
>>>>   File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line
>>>> 836, in resolve
>>>>
>>>>   File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line
>>>> 1081, in best_match
>>>>
>>>>   File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py", line
>>>> 1093, in obtain
>>>>
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/dist.py", line 380, in
>>>> fetch_build_egg
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py",
>>>> line 629, in easy_install
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py",
>>>> line 659, in install_item
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py",
>>>> line 842, in install_eggs
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py",
>>>> line 1070, in build_and_install
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/command/easy_install.py",
>>>> line 1056, in run_setup
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 240,
>>>> in run_setup
>>>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/lib/python2.7/contextlib.py",
>>>> line 35, in __exit__
>>>>     self.gen.throw(type, value, traceback)
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 193,
>>>> in setup_context
>>>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/lib/python2.7/contextlib.py",
>>>> line 35, in __exit__
>>>>     self.gen.throw(type, value, traceback)
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 152,
>>>> in save_modules
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 126,
>>>> in __exit__
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>>   File "build/bdist.linux-x86_64/egg/setuptools/sandbox.py", line 110,
>>>> in dump
>>>> MemoryError
>>>>
>>>>
>>>> Tazkera
>>>>
>>>> On Thu, Aug 25, 2016 at 11:51 PM, Nathan Goldbaum <
>>>> nathan12343 at gmail.com> wrote:
>>>>
>>>>>
>>>>>
>>>>> On Thu, Aug 25, 2016 at 9:49 PM, tazkera haque <h.tazkera at gmail.com>
>>>>> wrote:
>>>>>
>>>>>> Hi people,
>>>>>>
>>>>>> I would like to upgrade yt to the latest version, I tried typing *yt
>>>>>> update *in a folder on cluster /work/03858/thaque56/sw/yt-3.1 and it
>>>>>> gives me following error:
>>>>>>
>>>>>> Traceback (most recent call last):
>>>>>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/bin/yt", line 9, in
>>>>>> <module>
>>>>>>     load_entry_point('yt==3.2.3', 'console_scripts', 'yt')()
>>>>>>   File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py",
>>>>>> line 558, in load_entry_point
>>>>>>
>>>>>>   File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py",
>>>>>> line 2682, in load_entry_point
>>>>>>
>>>>>>   File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py",
>>>>>> line 2355, in load
>>>>>>
>>>>>>   File "build/bdist.linux-x86_64/egg/pkg_resources/__init__.py",
>>>>>> line 2361, in resolve
>>>>>>
>>>>>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/yt/__init__.py",
>>>>>> line 123, in <module>
>>>>>>     from yt.data_objects.api import \
>>>>>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/yt/data_objects/api.py",
>>>>>> line 16, in <module>
>>>>>>     from .grid_patch import \
>>>>>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/yt/data_objects/grid_patch.py",
>>>>>> line 19, in <module>
>>>>>>     from yt.data_objects.data_containers import \
>>>>>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/yt/data_objects/data_containers.py",
>>>>>> line 55, in <module>
>>>>>>     from yt.utilities.parallel_tools.parallel_analysis_interface
>>>>>> import \
>>>>>>   File "/work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/yt/utili
>>>>>> ties/parallel_tools/parallel_analysis_interface.py", line 33, in
>>>>>> <module>
>>>>>>     from yt.utilities.lib.quad_tree import \
>>>>>> ImportError: No module named quad_tree
>>>>>>
>>>>>>
>>>>> $ cd /work/03858/thaque56/sw/yt-3.1/yt-x86_64/src/yt-hg/
>>>>> $ hg --config extensions.purge= purge --all yt
>>>>> $ hg pull https://bitbucket.org/yt_analysis/yt
>>>>> $ hg update yt
>>>>> $ python setup.py develop
>>>>>
>>>>> This will put you on the latest in-development version of yt. If you'd
>>>>> instead like to be on the last stable release, do "hg update stable"
>>>>> instead of "hg update yt".
>>>>>
>>>>> "yt update" is supposed to automate this, but something seems to have
>>>>> gone wrong in your case. I'm not sure why.
>>>>>
>>>>>
>>>>>> and now I cannot excecute any of my python scripts there, please help
>>>>>> me upgrade and fix the problem. thanks
>>>>>>
>>>>>> Tazkera
>>>>>>
>>>>>> _______________________________________________
>>>>>> yt-users mailing list
>>>>>> yt-users at lists.spacepope.org
>>>>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>>>>>
>>>>>>
>>>>>
>>>>> _______________________________________________
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>>>>>
>>>>>
>>>>
>>>
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