[yt-users] data_source SlicePlot Error

[Nathan Goldbaum]

On Fri, Mar 27, 2015 at 2:15 PM, Andrew James Emerick <aje2123 at columbia.edu>
wrote:

> Nathan,
>
> Thanks for the response. I have been delinquent in updating yt.
>
> Running "yt update", however gives me this error:
> http://paste.yt-project.org/show/5492/
>
> Looks like an issue with finding the libhdf5.so.6 library that I couldn't
> figure out on my own. I had installed yt from source as to not disturb the
> python, numpy, hdf5, etc. installations I already had (managed by
> anaconda). I have libhdf5.so.9 in my LD_LIBRARY_PATH (I already tried
> soft linking .so.9 as .so.6 .. understandably it threw an error).
>
>
The error is happening when python tries to import h5py.  Can you import
h5py in a script that doesn't use yt?  How did you install h5py?

$ conda update -f h5py

might fix this.


> Have you run across this before?
>
>
>
> Andrew E.
>
> On Fri, Mar 27, 2015 at 1:04 PM, Nathan Goldbaum <nathan12343 at gmail.com>
> wrote:
>
>>
>>
>> On Fri, Mar 27, 2015 at 10:00 AM, Andrew James Emerick <
>> aje2123 at columbia.edu> wrote:
>>
>>> Hello everyone,
>>>
>>> I just ran into an error in using "data_source" kwarg with the SlicePlot
>>> function (error message copied below):
>>>
>>> slice = yt.SlicePlot(ds, axis, field, data_source=region)
>>> File
>>> "/home/emerick/.local/lib/python2.7/site-packages/yt-3.1dev-py2.7-linux-x86_64.egg/yt/visualization/plot_window.py",
>>> line 1816, in SlicePlot
>>>     return AxisAlignedSlicePlot(ds, normal, fields, *args, **kwargs)
>>> TypeError: __init__() got an unexpected keyword argument 'data_source'
>>>
>>> I have no problem doing the above with ProjectionPlot. If anyone knows
>>> what could be causing this I'd appreciate the help. Otherwise I can do some
>>> digging into the code myself.
>>>
>>>
>> Hi Andrew,
>>
>> This should work, but might not if you haven't updated yt in a while.
>> Can you update to the latest development version and try again?
>>
>> -Nathan
>>
>>
>>>
>>>
>>> Thanks,
>>> Andrew E.
>>> --
>>> Graduate Student
>>> Columbia University
>>> Department of Astronomy
>>>
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>>> yt-users mailing list
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>>>
>>
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>
>
> --
> Graduate Student
> Columbia University
> Department of Astronomy
>
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