[yt-users] Loading files query
Sushilkumar
sushil.sush19us at gmail.com
Wed Dec 9 15:44:46 PST 2015
Dear yt:
Thank you for your reply .
Now, my code generates a file which is in matrix market format. I would
like to plot this file using yt. Is there a way that yt can read this type
of file format?
Thanks in advance
On Wed, Dec 9, 2015 at 12:50 PM, <yt-users-request at lists.spacepope.org>
wrote:
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> Today's Topics:
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> 1. yt query (Sushilkumar)
> 2. Re: yt query (Nathan Goldbaum)
> 3. Re: code support for ZEUS-MP 2 (Andrea Negri)
> 4. Re: code support for ZEUS-MP 2 (Matthew Turk)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Tue, 8 Dec 2015 12:56:03 -0600
> From: Sushilkumar <sushil.sush19us at gmail.com>
> To: yt-users at lists.spacepope.org
> Subject: [yt-users] yt query
> Message-ID:
> <CAKARaKXB9FxdXv=_=
> q2iW7+eCfofsjW0oKsXTYiPh-vMtH6MBA at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Dear yt:
>
> I would like to plot magnetic field lines in 3D using either streamline or
> 3D quiver plots. Could you suggest me ways for the doing the same?
>
> Thanks in advance
>
>
>
> --
> *SK2*
>
> *"**Claiming that something can move faster than light is a good
> conversation-stopper in physics. People edge away from you in cocktail
> parties; friends never return phone calls. You just don?t mess with Albert
> Einstein.**"*
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> ------------------------------
>
> Message: 2
> Date: Tue, 8 Dec 2015 13:52:17 -0600
> From: Nathan Goldbaum <nathan12343 at gmail.com>
> To: Discussion of the yt analysis package
> <yt-users at lists.spacepope.org>
> Subject: Re: [yt-users] yt query
> Message-ID:
> <CAJXewOnxB9hbTKWwiiJrX+Q7un0fQrqHw99J55P6c=
> D4bG4vew at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> If you have data that's loadable by yt, you should be able to create the
> streamlines following this document:
>
> http://yt-project.org/doc/visualizing/streamlines.html
>
> yt doesn't natively visualize streamlines, but you can use matplotlib or
> mayavi to visualize the streamlines in 3d:
>
> * http://docs.enthought.com/mayavi/mayavi/mlab.html
> * http://matplotlib.org/mpl_toolkits/mplot3d/tutorial.html
>
> Hope that helps,
>
> Nathan
>
> On Tue, Dec 8, 2015 at 12:56 PM, Sushilkumar <sushil.sush19us at gmail.com>
> wrote:
>
> > Dear yt:
> >
> > I would like to plot magnetic field lines in 3D using either streamline
> or
> > 3D quiver plots. Could you suggest me ways for the doing the same?
> >
> > Thanks in advance
> >
> >
> >
> > --
> > *SK2*
> >
> > *"**Claiming that something can move faster than light is a good
> > conversation-stopper in physics. People edge away from you in cocktail
> > parties; friends never return phone calls. You just don?t mess with
> Albert
> > Einstein.**"*
> >
> >
> > _______________________________________________
> > yt-users mailing list
> > yt-users at lists.spacepope.org
> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
> >
> >
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> ------------------------------
>
> Message: 3
> Date: Wed, 9 Dec 2015 10:38:43 +0100
> From: Andrea Negri <negri.andre at gmail.com>
> To: Discussion of the yt analysis package
> <yt-users at lists.spacepope.org>
> Subject: Re: [yt-users] code support for ZEUS-MP 2
> Message-ID:
> <CAPUxaiQnwSY=FT_e+a0AQi=
> uu8mx42K9pO3pj6kRwBnTvtJGNg at mail.gmail.com>
> Content-Type: text/plain; charset=UTF-8
>
> Hi Matthew,
> sorry for the late reply.
>
> I forgot to say that the spacing of the (spherical) radial grid is not
> constant with the radius, but it is logarithmically sampled. Is it a
> problem?
>
>
> Andrea
>
> On 2 December 2015 at 18:13, Matthew Turk <matthewturk at gmail.com> wrote:
> > Hi Andrea,
> >
> > It should be straightforward to do this. You can load it in to yt
> > using the yt.load_uniform_grid function, and then specify the geometry
> > as spherical. In the docs we have some examples:
> >
> >
> http://yt-project.org/docs/3.2/examining/loading_data.html#generic-array-data
> >
> > Specifying geometry="spherical" works here, and if your data is not in
> > r,theta,phi, you can specify the axis ordering with
> > geometry=("spherical", ("theta", "phi", "r")) (or whatever).
> >
> > -Matt
> >
> > On Wed, Dec 2, 2015 at 10:43 AM, Andrea Negri <negri at iap.fr> wrote:
> >> Hello,
> >>
> >> I'm a ZEUS-MP 2 user, and I was wondering if is it possible to add the
> >> support to ZEUS-MP 2 data, which are stored in HDF5 files.
> >>
> >> The data are nothing special or fancy, forget about particles or
> multiple
> >> levels of refinement. The code has a fixed grid in spherical
> coordinates,
> >> and all my simulations are axially symmetric, i.e. all the variables
> depends
> >> only on the spherical radius and co-latitude.
> >>
> >> It would be great to benefits of all the yt features!
> >>
> >> Thanks in advance,
> >> Andrea Negri
> >> _______________________________________________
> >> yt-users mailing list
> >> yt-users at lists.spacepope.org
> >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
> > _______________________________________________
> > yt-users mailing list
> > yt-users at lists.spacepope.org
> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>
>
> ------------------------------
>
> Message: 4
> Date: Wed, 9 Dec 2015 05:56:05 -0600
> From: Matthew Turk <matthewturk at gmail.com>
> To: Discussion of the yt analysis package
> <yt-users at lists.spacepope.org>
> Subject: Re: [yt-users] code support for ZEUS-MP 2
> Message-ID:
> <CALO3=5HPm=HoxuXwJnSXjuU=
> NX26pDHNGqCC+Ry-aLVwETfXEw at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hi Andrea,
>
> For that, you can use the load_hexahedral_mesh function. There's an example
> in the docs as well.
>
> Matt
> On Dec 9, 2015 3:39 AM, "Andrea Negri" <negri.andre at gmail.com> wrote:
>
> > Hi Matthew,
> > sorry for the late reply.
> >
> > I forgot to say that the spacing of the (spherical) radial grid is not
> > constant with the radius, but it is logarithmically sampled. Is it a
> > problem?
> >
> >
> > Andrea
> >
> > On 2 December 2015 at 18:13, Matthew Turk <matthewturk at gmail.com> wrote:
> > > Hi Andrea,
> > >
> > > It should be straightforward to do this. You can load it in to yt
> > > using the yt.load_uniform_grid function, and then specify the geometry
> > > as spherical. In the docs we have some examples:
> > >
> > >
> >
> http://yt-project.org/docs/3.2/examining/loading_data.html#generic-array-data
> > >
> > > Specifying geometry="spherical" works here, and if your data is not in
> > > r,theta,phi, you can specify the axis ordering with
> > > geometry=("spherical", ("theta", "phi", "r")) (or whatever).
> > >
> > > -Matt
> > >
> > > On Wed, Dec 2, 2015 at 10:43 AM, Andrea Negri <negri at iap.fr> wrote:
> > >> Hello,
> > >>
> > >> I'm a ZEUS-MP 2 user, and I was wondering if is it possible to add the
> > >> support to ZEUS-MP 2 data, which are stored in HDF5 files.
> > >>
> > >> The data are nothing special or fancy, forget about particles or
> > multiple
> > >> levels of refinement. The code has a fixed grid in spherical
> > coordinates,
> > >> and all my simulations are axially symmetric, i.e. all the variables
> > depends
> > >> only on the spherical radius and co-latitude.
> > >>
> > >> It would be great to benefits of all the yt features!
> > >>
> > >> Thanks in advance,
> > >> Andrea Negri
> > >> _______________________________________________
> > >> yt-users mailing list
> > >> yt-users at lists.spacepope.org
> > >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
> > > _______________________________________________
> > > yt-users mailing list
> > > yt-users at lists.spacepope.org
> > > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
> > _______________________________________________
> > yt-users mailing list
> > yt-users at lists.spacepope.org
> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
> >
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--
*SK2*
*"**Claiming that something can move faster than light is a good
conversation-stopper in physics. People edge away from you in cocktail
parties; friends never return phone calls. You just don’t mess with Albert
Einstein.**"*
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