[yt-users] yt-users Digest, Vol 79, Issue 37

Brandon Bozek brandon.bozek at gmail.com
Fri Sep 26 14:38:47 PDT 2014 

Thanks! That was the hint I needed. I am on a cluster that loads modules to
have access to various packages and I had the module for python loaded.
Unloading it, caused it to move forward.

thanks for the quick help everyone!

On Fri, Sep 26, 2014 at 5:34 PM, <yt-users-request at lists.spacepope.org>
wrote:

> Send yt-users mailing list submissions to
>         yt-users at lists.spacepope.org
>
> To subscribe or unsubscribe via the World Wide Web, visit
>         http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
> or, via email, send a message with subject or body 'help' to
>         yt-users-request at lists.spacepope.org
>
> You can reach the person managing the list at
>         yt-users-owner at lists.spacepope.org
>
> When replying, please edit your Subject line so it is more specific
> than "Re: Contents of yt-users digest..."
>
>
> Today's Topics:
>
>    1. Re: yt-users Digest, Vol 79, Issue 35 (Nathan Goldbaum)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Fri, 26 Sep 2014 14:33:53 -0700
> From: Nathan Goldbaum <nathan12343 at gmail.com>
> To: Discussion of the yt analysis package
>         <yt-users at lists.spacepope.org>
> Subject: Re: [yt-users] yt-users Digest, Vol 79, Issue 35
> Message-ID:
>         <CAJXewO=
> MeHbEEEXptVmH6jKDYkp+KNuJsHreqNbt1weyLJccKQ at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hmm, I guess it's possible that building yt's python failed, and later in
> the install script it is trying to install mercurial using the system
> python.
>
> Would you mind uploading the full install log somewhere?  Dropbox and
> google drive are useful for sharing big files like this over e-mail.
>
> -Nathan
>
> On Fri, Sep 26, 2014 at 2:29 PM, Brandon Bozek <brandon.bozek at gmail.com>
> wrote:
>
> > Thanks for the series of replies.
> >
> > I ran "bash install_script.sh" to start the install. I am able to create
> > file/directory in the directory I am in. The install script creates
> > ./yt-x86_64/ and downloads a bunch of files before hitting this hiccup.
> >
> >
> > On Fri, Sep 26, 2014 at 5:21 PM, <yt-users-request at lists.spacepope.org>
> > wrote:
> >
> >> Send yt-users mailing list submissions to
> >>         yt-users at lists.spacepope.org
> >>
> >> To subscribe or unsubscribe via the World Wide Web, visit
> >>         http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
> >> or, via email, send a message with subject or body 'help' to
> >>         yt-users-request at lists.spacepope.org
> >>
> >> You can reach the person managing the list at
> >>         yt-users-owner at lists.spacepope.org
> >>
> >> When replying, please edit your Subject line so it is more specific
> >> than "Re: Contents of yt-users digest..."
> >>
> >>
> >> Today's Topics:
> >>
> >>    1. install error on large cluster (Brandon Bozek)
> >>    2. Re: install error on large cluster (Nathan Goldbaum)
> >>    3. Re: install error on large cluster (Chris Malone)
> >>    4. Re: install error on large cluster (Nathan Goldbaum)
> >>
> >>
> >> ----------------------------------------------------------------------
> >>
> >> Message: 1
> >> Date: Fri, 26 Sep 2014 17:03:58 -0400
> >> From: Brandon Bozek <brandon.bozek at gmail.com>
> >> To: yt-users at lists.spacepope.org
> >> Subject: [yt-users] install error on large cluster
> >> Message-ID:
> >>         <CADMUOqetC_YKk6TAiW+YKxSqbm5edmdx7s_t=
> >> xS6z+3q4v5W4A at mail.gmail.com>
> >> Content-Type: text/plain; charset="utf-8"
> >>
> >> Hello All,
> >>
> >> I am trying to install yt on a cluster at my institution and I ran the
> >> install script for the stable version and got this error: "error: could
> >> not
> >> create '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':
> >> Read-only file system".
> >>
> >> The last few lines are copied below. Please let me know if I should send
> >> anything else.
> >>
> >> Thanks!
> >> Brandon
> >>
> >> creating build/lib.linux-x86_64-2.7/mercurial/templates/static
> >>
> >> copying mercurial/templates/static/coal-folder.png ->
> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >>
> >> copying mercurial/templates/static/style-gitweb.css ->
> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >>
> >> copying mercurial/templates/static/background.png ->
> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >>
> >> copying mercurial/templates/static/style-coal.css ->
> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >>
> >> copying mercurial/templates/static/hglogo.png ->
> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >>
> >> copying mercurial/templates/static/style-paper.css ->
> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >>
> >> copying mercurial/templates/static/style.css ->
> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >>
> >> copying mercurial/templates/static/excanvas.js ->
> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >>
> >> copying mercurial/templates/static/coal-file.png ->
> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >>
> >> copying mercurial/templates/static/hgicon.png ->
> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >>
> >> copying mercurial/templates/static/mercurial.js ->
> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >>
> >> copying mercurial/templates/static/feed-icon-14x14.png ->
> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >>
> >> copying mercurial/templates/static/style-monoblue.css ->
> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >>
> >> running build_scripts
> >>
> >> creating build/scripts-2.7
> >>
> >> copying and adjusting hg -> build/scripts-2.7
> >>
> >> changing mode of build/scripts-2.7/hg from 644 to 755
> >>
> >> running install
> >>
> >> running build
> >>
> >> running build_mo
> >>
> >> running build_ext
> >>
> >> running build_py
> >>
> >> running build_scripts
> >>
> >> running install_lib
> >>
> >> creating /usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial
> >>
> >> error: could not create
> >> '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':
> Read-only
> >> file system
> >> -------------- next part --------------
> >> An HTML attachment was scrubbed...
> >> URL: <
> >>
> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20140926/e4d39f95/attachment.htm
> >> >
> >>
> >> ------------------------------
> >>
> >> Message: 2
> >> Date: Fri, 26 Sep 2014 14:07:04 -0700
> >> From: Nathan Goldbaum <nathan12343 at gmail.com>
> >> To: Discussion of the yt analysis package
> >>         <yt-users at lists.spacepope.org>
> >> Subject: Re: [yt-users] install error on large cluster
> >> Message-ID:
> >>         <
> >> CAJXewOmmu0Oux1FaTFndS4jT_ede0waH3_VdtzeHgKFuELr-oA at mail.gmail.com>
> >> Content-Type: text/plain; charset="utf-8"
> >>
> >> Hi Brandon,
> >>
> >> How did you invoke the install script?
> >>
> >> -Nathan
> >>
> >> On Fri, Sep 26, 2014 at 2:03 PM, Brandon Bozek <brandon.bozek at gmail.com
> >
> >> wrote:
> >>
> >> > Hello All,
> >> >
> >> > I am trying to install yt on a cluster at my institution and I ran the
> >> > install script for the stable version and got this error: "error:
> could
> >> not
> >> > create
> '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':
> >> > Read-only file system".
> >> >
> >> > The last few lines are copied below. Please let me know if I should
> send
> >> > anything else.
> >> >
> >> > Thanks!
> >> > Brandon
> >> >
> >> > creating build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/coal-folder.png ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/style-gitweb.css ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/background.png ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/style-coal.css ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/hglogo.png ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/style-paper.css ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/style.css ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/excanvas.js ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/coal-file.png ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/hgicon.png ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/mercurial.js ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/feed-icon-14x14.png ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/style-monoblue.css ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > running build_scripts
> >> >
> >> > creating build/scripts-2.7
> >> >
> >> > copying and adjusting hg -> build/scripts-2.7
> >> >
> >> > changing mode of build/scripts-2.7/hg from 644 to 755
> >> >
> >> > running install
> >> >
> >> > running build
> >> >
> >> > running build_mo
> >> >
> >> > running build_ext
> >> >
> >> > running build_py
> >> >
> >> > running build_scripts
> >> >
> >> > running install_lib
> >> >
> >> > creating /usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial
> >> >
> >> > error: could not create
> >> > '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':
> >> Read-only
> >> > file system
> >> >
> >> > _______________________________________________
> >> > yt-users mailing list
> >> > yt-users at lists.spacepope.org
> >> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
> >> >
> >> >
> >> -------------- next part --------------
> >> An HTML attachment was scrubbed...
> >> URL: <
> >>
> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20140926/d5bdd9f2/attachment.htm
> >> >
> >>
> >> ------------------------------
> >>
> >> Message: 3
> >> Date: Fri, 26 Sep 2014 15:18:26 -0600
> >> From: Chris Malone <chris.m.malone at gmail.com>
> >> To: Discussion of the yt analysis package
> >>         <yt-users at lists.spacepope.org>
> >> Subject: Re: [yt-users] install error on large cluster
> >> Message-ID:
> >>         <
> >> CAED6uLZnaSBn0z_9T4yzMd1PzQRrT3jUyRU+eWK6tqT3i7XC6A at mail.gmail.com>
> >> Content-Type: text/plain; charset="utf-8"
> >>
> >> Hi Brandon,
> >>
> >> The 'Read-only file system' part makes me think the issue isn't related
> to
> >> the yt build.  Usually that message happens when the filesystem detected
> >> an
> >> error and the OS remounts the file system in read-only mode.  Are there
> >> any
> >> other issues on the FS?  Are you able to manually create a
> file/directory
> >> on that FS?
> >>
> >> Chris
> >>
> >> On Fri, Sep 26, 2014 at 3:03 PM, Brandon Bozek <brandon.bozek at gmail.com
> >
> >> wrote:
> >>
> >> > Hello All,
> >> >
> >> > I am trying to install yt on a cluster at my institution and I ran the
> >> > install script for the stable version and got this error: "error:
> could
> >> not
> >> > create
> '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':
> >> > Read-only file system".
> >> >
> >> > The last few lines are copied below. Please let me know if I should
> send
> >> > anything else.
> >> >
> >> > Thanks!
> >> > Brandon
> >> >
> >> > creating build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/coal-folder.png ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/style-gitweb.css ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/background.png ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/style-coal.css ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/hglogo.png ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/style-paper.css ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/style.css ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/excanvas.js ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/coal-file.png ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/hgicon.png ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/mercurial.js ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/feed-icon-14x14.png ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > copying mercurial/templates/static/style-monoblue.css ->
> >> > build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >
> >> > running build_scripts
> >> >
> >> > creating build/scripts-2.7
> >> >
> >> > copying and adjusting hg -> build/scripts-2.7
> >> >
> >> > changing mode of build/scripts-2.7/hg from 644 to 755
> >> >
> >> > running install
> >> >
> >> > running build
> >> >
> >> > running build_mo
> >> >
> >> > running build_ext
> >> >
> >> > running build_py
> >> >
> >> > running build_scripts
> >> >
> >> > running install_lib
> >> >
> >> > creating /usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial
> >> >
> >> > error: could not create
> >> > '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':
> >> Read-only
> >> > file system
> >> >
> >> > _______________________________________________
> >> > yt-users mailing list
> >> > yt-users at lists.spacepope.org
> >> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
> >> >
> >> >
> >> -------------- next part --------------
> >> An HTML attachment was scrubbed...
> >> URL: <
> >>
> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20140926/3e9252bd/attachment.htm
> >> >
> >>
> >> ------------------------------
> >>
> >> Message: 4
> >> Date: Fri, 26 Sep 2014 14:20:58 -0700
> >> From: Nathan Goldbaum <nathan12343 at gmail.com>
> >> To: Discussion of the yt analysis package
> >>         <yt-users at lists.spacepope.org>
> >> Subject: Re: [yt-users] install error on large cluster
> >> Message-ID:
> >>         <
> >> CAJXewOm4JzsXUGPhDpQ6CfnM1XNkMTR5xDemLx14hivKWy_dPA at mail.gmail.com>
> >> Content-Type: text/plain; charset="utf-8"
> >>
> >> On Fri, Sep 26, 2014 at 2:18 PM, Chris Malone <chris.m.malone at gmail.com
> >
> >> wrote:
> >>
> >> > Hi Brandon,
> >> >
> >> > The 'Read-only file system' part makes me think the issue isn't
> related
> >> to
> >> > the yt build.  Usually that message happens when the filesystem
> >> detected an
> >> > error and the OS remounts the file system in read-only mode.  Are
> there
> >> any
> >> > other issues on the FS?  Are you able to manually create a
> >> file/directory
> >> > on that FS?
> >> >
> >>
> >> Note that mercurial is being installed into /usr/local, which should
> never
> >> happen using the install script.  That's why I asked how the install
> >> script
> >> was being invoked.
> >>
> >>
> >> >
> >> > Chris
> >> >
> >> > On Fri, Sep 26, 2014 at 3:03 PM, Brandon Bozek <
> brandon.bozek at gmail.com
> >> >
> >> > wrote:
> >> >
> >> >> Hello All,
> >> >>
> >> >> I am trying to install yt on a cluster at my institution and I ran
> the
> >> >> install script for the stable version and got this error: "error:
> >> could not
> >> >> create
> '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':
> >> >> Read-only file system".
> >> >>
> >> >> The last few lines are copied below. Please let me know if I should
> >> send
> >> >> anything else.
> >> >>
> >> >> Thanks!
> >> >> Brandon
> >> >>
> >> >> creating build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >>
> >> >> copying mercurial/templates/static/coal-folder.png ->
> >> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >>
> >> >> copying mercurial/templates/static/style-gitweb.css ->
> >> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >>
> >> >> copying mercurial/templates/static/background.png ->
> >> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >>
> >> >> copying mercurial/templates/static/style-coal.css ->
> >> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >>
> >> >> copying mercurial/templates/static/hglogo.png ->
> >> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >>
> >> >> copying mercurial/templates/static/style-paper.css ->
> >> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >>
> >> >> copying mercurial/templates/static/style.css ->
> >> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >>
> >> >> copying mercurial/templates/static/excanvas.js ->
> >> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >>
> >> >> copying mercurial/templates/static/coal-file.png ->
> >> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >>
> >> >> copying mercurial/templates/static/hgicon.png ->
> >> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >>
> >> >> copying mercurial/templates/static/mercurial.js ->
> >> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >>
> >> >> copying mercurial/templates/static/feed-icon-14x14.png ->
> >> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >>
> >> >> copying mercurial/templates/static/style-monoblue.css ->
> >> >> build/lib.linux-x86_64-2.7/mercurial/templates/static
> >> >>
> >> >> running build_scripts
> >> >>
> >> >> creating build/scripts-2.7
> >> >>
> >> >> copying and adjusting hg -> build/scripts-2.7
> >> >>
> >> >> changing mode of build/scripts-2.7/hg from 644 to 755
> >> >>
> >> >> running install
> >> >>
> >> >> running build
> >> >>
> >> >> running build_mo
> >> >>
> >> >> running build_ext
> >> >>
> >> >> running build_py
> >> >>
> >> >> running build_scripts
> >> >>
> >> >> running install_lib
> >> >>
> >> >> creating
> /usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial
> >> >>
> >> >> error: could not create
> >> >> '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':
> >> Read-only
> >> >> file system
> >> >>
> >> >> _______________________________________________
> >> >> yt-users mailing list
> >> >> yt-users at lists.spacepope.org
> >> >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
> >> >>
> >> >>
> >> >
> >> > _______________________________________________
> >> > yt-users mailing list
> >> > yt-users at lists.spacepope.org
> >> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
> >> >
> >> >
> >> -------------- next part --------------
> >> An HTML attachment was scrubbed...
> >> URL: <
> >>
> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20140926/7fca96b5/attachment.htm
> >> >
> >>
> >> ------------------------------
> >>
> >> Subject: Digest Footer
> >>
> >> _______________________________________________
> >> yt-users mailing list
> >> yt-users at lists.spacepope.org
> >> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
> >>
> >>
> >> ------------------------------
> >>
> >> End of yt-users Digest, Vol 79, Issue 35
> >> ****************************************
> >>
> >
> >
> > _______________________________________________
> > yt-users mailing list
> > yt-users at lists.spacepope.org
> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
> >
> >
> -------------- next part --------------
> An HTML attachment was scrubbed...
> URL: <
> http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20140926/b2219b6e/attachment.htm
> >
>
> ------------------------------
>
> Subject: Digest Footer
>
> _______________________________________________
> yt-users mailing list
> yt-users at lists.spacepope.org
> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>
>
> ------------------------------
>
> End of yt-users Digest, Vol 79, Issue 37
> ****************************************
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20140926/dfc2bc7e/attachment.htm>

More information about the yt-users mailing list