<div dir="ltr">Hmm, I guess it's possible that building yt's python failed, and later in the install script it is trying to install mercurial using the system python.<div><br></div><div>Would you mind uploading the full install log somewhere? Dropbox and google drive are useful for sharing big files like this over e-mail.</div><div><br></div><div>-Nathan</div><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Sep 26, 2014 at 2:29 PM, Brandon Bozek <span dir="ltr"><<a href="mailto:brandon.bozek@gmail.com" target="_blank">brandon.bozek@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Thanks for the series of replies.<div><br></div><div>I ran "bash install_script.sh" to start the install. I am able to create file/directory in the directory I am in. The install script creates ./yt-x86_64/ and downloads a bunch of files before hitting this hiccup. </div><div><br><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Sep 26, 2014 at 5:21 PM, <span dir="ltr"><<a href="mailto:yt-users-request@lists.spacepope.org" target="_blank">yt-users-request@lists.spacepope.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-color:rgb(204,204,204);border-left-style:solid;padding-left:1ex">Send yt-users mailing list submissions to<br>
<a href="mailto:yt-users@lists.spacepope.org" target="_blank">yt-users@lists.spacepope.org</a><br>
<br>
To subscribe or unsubscribe via the World Wide Web, visit<br>
<a href="http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org" target="_blank">http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org</a><br>
or, via email, send a message with subject or body 'help' to<br>
<a href="mailto:yt-users-request@lists.spacepope.org" target="_blank">yt-users-request@lists.spacepope.org</a><br>
<br>
You can reach the person managing the list at<br>
<a href="mailto:yt-users-owner@lists.spacepope.org" target="_blank">yt-users-owner@lists.spacepope.org</a><br>
<br>
When replying, please edit your Subject line so it is more specific<br>
than "Re: Contents of yt-users digest..."<br>
<br>
<br>
Today's Topics:<br>
<br>
1. install error on large cluster (Brandon Bozek)<br>
2. Re: install error on large cluster (Nathan Goldbaum)<br>
3. Re: install error on large cluster (Chris Malone)<br>
4. Re: install error on large cluster (Nathan Goldbaum)<br>
<br>
<br>
----------------------------------------------------------------------<br>
<br>
Message: 1<br>
Date: Fri, 26 Sep 2014 17:03:58 -0400<br>
From: Brandon Bozek <<a href="mailto:brandon.bozek@gmail.com" target="_blank">brandon.bozek@gmail.com</a>><br>
To: <a href="mailto:yt-users@lists.spacepope.org" target="_blank">yt-users@lists.spacepope.org</a><br>
Subject: [yt-users] install error on large cluster<br>
Message-ID:<br>
<CADMUOqetC_YKk6TAiW+YKxSqbm5edmdx7s_t=<a href="mailto:xS6z%2B3q4v5W4A@mail.gmail.com" target="_blank">xS6z+3q4v5W4A@mail.gmail.com</a>><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
Hello All,<br>
<br>
I am trying to install yt on a cluster at my institution and I ran the<br>
install script for the stable version and got this error: "error: could not<br>
create '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':<br>
Read-only file system".<br>
<br>
The last few lines are copied below. Please let me know if I should send<br>
anything else.<br>
<br>
Thanks!<br>
Brandon<br>
<br>
creating build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
<br>
copying mercurial/templates/static/coal-folder.png -><br>
build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
<br>
copying mercurial/templates/static/style-gitweb.css -><br>
build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
<br>
copying mercurial/templates/static/background.png -><br>
build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
<br>
copying mercurial/templates/static/style-coal.css -><br>
build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
<br>
copying mercurial/templates/static/hglogo.png -><br>
build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
<br>
copying mercurial/templates/static/style-paper.css -><br>
build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
<br>
copying mercurial/templates/static/style.css -><br>
build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
<br>
copying mercurial/templates/static/excanvas.js -><br>
build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
<br>
copying mercurial/templates/static/coal-file.png -><br>
build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
<br>
copying mercurial/templates/static/hgicon.png -><br>
build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
<br>
copying mercurial/templates/static/mercurial.js -><br>
build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
<br>
copying mercurial/templates/static/feed-icon-14x14.png -><br>
build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
<br>
copying mercurial/templates/static/style-monoblue.css -><br>
build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
<br>
running build_scripts<br>
<br>
creating build/scripts-2.7<br>
<br>
copying and adjusting hg -> build/scripts-2.7<br>
<br>
changing mode of build/scripts-2.7/hg from 644 to 755<br>
<br>
running install<br>
<br>
running build<br>
<br>
running build_mo<br>
<br>
running build_ext<br>
<br>
running build_py<br>
<br>
running build_scripts<br>
<br>
running install_lib<br>
<br>
creating /usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial<br>
<br>
error: could not create<br>
'/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial': Read-only<br>
file system<br>
-------------- next part --------------<br>
An HTML attachment was scrubbed...<br>
URL: <<a href="http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20140926/e4d39f95/attachment.htm" target="_blank">http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20140926/e4d39f95/attachment.htm</a>><br>
<br>
------------------------------<br>
<br>
Message: 2<br>
Date: Fri, 26 Sep 2014 14:07:04 -0700<br>
From: Nathan Goldbaum <<a href="mailto:nathan12343@gmail.com" target="_blank">nathan12343@gmail.com</a>><br>
To: Discussion of the yt analysis package<br>
<<a href="mailto:yt-users@lists.spacepope.org" target="_blank">yt-users@lists.spacepope.org</a>><br>
Subject: Re: [yt-users] install error on large cluster<br>
Message-ID:<br>
<<a href="mailto:CAJXewOmmu0Oux1FaTFndS4jT_ede0waH3_VdtzeHgKFuELr-oA@mail.gmail.com" target="_blank">CAJXewOmmu0Oux1FaTFndS4jT_ede0waH3_VdtzeHgKFuELr-oA@mail.gmail.com</a>><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
Hi Brandon,<br>
<br>
How did you invoke the install script?<br>
<br>
-Nathan<br>
<br>
On Fri, Sep 26, 2014 at 2:03 PM, Brandon Bozek <<a href="mailto:brandon.bozek@gmail.com" target="_blank">brandon.bozek@gmail.com</a>><br>
wrote:<br>
<br>
> Hello All,<br>
><br>
> I am trying to install yt on a cluster at my institution and I ran the<br>
> install script for the stable version and got this error: "error: could not<br>
> create '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':<br>
> Read-only file system".<br>
><br>
> The last few lines are copied below. Please let me know if I should send<br>
> anything else.<br>
><br>
> Thanks!<br>
> Brandon<br>
><br>
> creating build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/coal-folder.png -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/style-gitweb.css -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/background.png -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/style-coal.css -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/hglogo.png -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/style-paper.css -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/style.css -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/excanvas.js -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/coal-file.png -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/hgicon.png -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/mercurial.js -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/feed-icon-14x14.png -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/style-monoblue.css -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> running build_scripts<br>
><br>
> creating build/scripts-2.7<br>
><br>
> copying and adjusting hg -> build/scripts-2.7<br>
><br>
> changing mode of build/scripts-2.7/hg from 644 to 755<br>
><br>
> running install<br>
><br>
> running build<br>
><br>
> running build_mo<br>
><br>
> running build_ext<br>
><br>
> running build_py<br>
><br>
> running build_scripts<br>
><br>
> running install_lib<br>
><br>
> creating /usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial<br>
><br>
> error: could not create<br>
> '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial': Read-only<br>
> file system<br>
><br>
> _______________________________________________<br>
> yt-users mailing list<br>
> <a href="mailto:yt-users@lists.spacepope.org" target="_blank">yt-users@lists.spacepope.org</a><br>
> <a href="http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org" target="_blank">http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org</a><br>
><br>
><br>
-------------- next part --------------<br>
An HTML attachment was scrubbed...<br>
URL: <<a href="http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20140926/d5bdd9f2/attachment.htm" target="_blank">http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20140926/d5bdd9f2/attachment.htm</a>><br>
<br>
------------------------------<br>
<br>
Message: 3<br>
Date: Fri, 26 Sep 2014 15:18:26 -0600<br>
From: Chris Malone <<a href="mailto:chris.m.malone@gmail.com" target="_blank">chris.m.malone@gmail.com</a>><br>
To: Discussion of the yt analysis package<br>
<<a href="mailto:yt-users@lists.spacepope.org" target="_blank">yt-users@lists.spacepope.org</a>><br>
Subject: Re: [yt-users] install error on large cluster<br>
Message-ID:<br>
<<a href="mailto:CAED6uLZnaSBn0z_9T4yzMd1PzQRrT3jUyRU%2BeWK6tqT3i7XC6A@mail.gmail.com" target="_blank">CAED6uLZnaSBn0z_9T4yzMd1PzQRrT3jUyRU+eWK6tqT3i7XC6A@mail.gmail.com</a>><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
Hi Brandon,<br>
<br>
The 'Read-only file system' part makes me think the issue isn't related to<br>
the yt build. Usually that message happens when the filesystem detected an<br>
error and the OS remounts the file system in read-only mode. Are there any<br>
other issues on the FS? Are you able to manually create a file/directory<br>
on that FS?<br>
<br>
Chris<br>
<br>
On Fri, Sep 26, 2014 at 3:03 PM, Brandon Bozek <<a href="mailto:brandon.bozek@gmail.com" target="_blank">brandon.bozek@gmail.com</a>><br>
wrote:<br>
<br>
> Hello All,<br>
><br>
> I am trying to install yt on a cluster at my institution and I ran the<br>
> install script for the stable version and got this error: "error: could not<br>
> create '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':<br>
> Read-only file system".<br>
><br>
> The last few lines are copied below. Please let me know if I should send<br>
> anything else.<br>
><br>
> Thanks!<br>
> Brandon<br>
><br>
> creating build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/coal-folder.png -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/style-gitweb.css -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/background.png -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/style-coal.css -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/hglogo.png -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/style-paper.css -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/style.css -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/excanvas.js -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/coal-file.png -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/hgicon.png -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/mercurial.js -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/feed-icon-14x14.png -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> copying mercurial/templates/static/style-monoblue.css -><br>
> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
><br>
> running build_scripts<br>
><br>
> creating build/scripts-2.7<br>
><br>
> copying and adjusting hg -> build/scripts-2.7<br>
><br>
> changing mode of build/scripts-2.7/hg from 644 to 755<br>
><br>
> running install<br>
><br>
> running build<br>
><br>
> running build_mo<br>
><br>
> running build_ext<br>
><br>
> running build_py<br>
><br>
> running build_scripts<br>
><br>
> running install_lib<br>
><br>
> creating /usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial<br>
><br>
> error: could not create<br>
> '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial': Read-only<br>
> file system<br>
><br>
> _______________________________________________<br>
> yt-users mailing list<br>
> <a href="mailto:yt-users@lists.spacepope.org" target="_blank">yt-users@lists.spacepope.org</a><br>
> <a href="http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org" target="_blank">http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org</a><br>
><br>
><br>
-------------- next part --------------<br>
An HTML attachment was scrubbed...<br>
URL: <<a href="http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20140926/3e9252bd/attachment.htm" target="_blank">http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20140926/3e9252bd/attachment.htm</a>><br>
<br>
------------------------------<br>
<br>
Message: 4<br>
Date: Fri, 26 Sep 2014 14:20:58 -0700<br>
From: Nathan Goldbaum <<a href="mailto:nathan12343@gmail.com" target="_blank">nathan12343@gmail.com</a>><br>
To: Discussion of the yt analysis package<br>
<<a href="mailto:yt-users@lists.spacepope.org" target="_blank">yt-users@lists.spacepope.org</a>><br>
Subject: Re: [yt-users] install error on large cluster<br>
Message-ID:<br>
<<a href="mailto:CAJXewOm4JzsXUGPhDpQ6CfnM1XNkMTR5xDemLx14hivKWy_dPA@mail.gmail.com" target="_blank">CAJXewOm4JzsXUGPhDpQ6CfnM1XNkMTR5xDemLx14hivKWy_dPA@mail.gmail.com</a>><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
On Fri, Sep 26, 2014 at 2:18 PM, Chris Malone <<a href="mailto:chris.m.malone@gmail.com" target="_blank">chris.m.malone@gmail.com</a>><br>
wrote:<br>
<br>
> Hi Brandon,<br>
><br>
> The 'Read-only file system' part makes me think the issue isn't related to<br>
> the yt build. Usually that message happens when the filesystem detected an<br>
> error and the OS remounts the file system in read-only mode. Are there any<br>
> other issues on the FS? Are you able to manually create a file/directory<br>
> on that FS?<br>
><br>
<br>
Note that mercurial is being installed into /usr/local, which should never<br>
happen using the install script. That's why I asked how the install script<br>
was being invoked.<br>
<br>
<br>
><br>
> Chris<br>
><br>
> On Fri, Sep 26, 2014 at 3:03 PM, Brandon Bozek <<a href="mailto:brandon.bozek@gmail.com" target="_blank">brandon.bozek@gmail.com</a>><br>
> wrote:<br>
><br>
>> Hello All,<br>
>><br>
>> I am trying to install yt on a cluster at my institution and I ran the<br>
>> install script for the stable version and got this error: "error: could not<br>
>> create '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial':<br>
>> Read-only file system".<br>
>><br>
>> The last few lines are copied below. Please let me know if I should send<br>
>> anything else.<br>
>><br>
>> Thanks!<br>
>> Brandon<br>
>><br>
>> creating build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
>><br>
>> copying mercurial/templates/static/coal-folder.png -><br>
>> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
>><br>
>> copying mercurial/templates/static/style-gitweb.css -><br>
>> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
>><br>
>> copying mercurial/templates/static/background.png -><br>
>> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
>><br>
>> copying mercurial/templates/static/style-coal.css -><br>
>> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
>><br>
>> copying mercurial/templates/static/hglogo.png -><br>
>> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
>><br>
>> copying mercurial/templates/static/style-paper.css -><br>
>> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
>><br>
>> copying mercurial/templates/static/style.css -><br>
>> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
>><br>
>> copying mercurial/templates/static/excanvas.js -><br>
>> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
>><br>
>> copying mercurial/templates/static/coal-file.png -><br>
>> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
>><br>
>> copying mercurial/templates/static/hgicon.png -><br>
>> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
>><br>
>> copying mercurial/templates/static/mercurial.js -><br>
>> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
>><br>
>> copying mercurial/templates/static/feed-icon-14x14.png -><br>
>> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
>><br>
>> copying mercurial/templates/static/style-monoblue.css -><br>
>> build/lib.linux-x86_64-2.7/mercurial/templates/static<br>
>><br>
>> running build_scripts<br>
>><br>
>> creating build/scripts-2.7<br>
>><br>
>> copying and adjusting hg -> build/scripts-2.7<br>
>><br>
>> changing mode of build/scripts-2.7/hg from 644 to 755<br>
>><br>
>> running install<br>
>><br>
>> running build<br>
>><br>
>> running build_mo<br>
>><br>
>> running build_ext<br>
>><br>
>> running build_py<br>
>><br>
>> running build_scripts<br>
>><br>
>> running install_lib<br>
>><br>
>> creating /usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial<br>
>><br>
>> error: could not create<br>
>> '/usr/local/python/2.7.3/lib/python2.7/site-packages/mercurial': Read-only<br>
>> file system<br>
>><br>
>> _______________________________________________<br>
>> yt-users mailing list<br>
>> <a href="mailto:yt-users@lists.spacepope.org" target="_blank">yt-users@lists.spacepope.org</a><br>
>> <a href="http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org" target="_blank">http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org</a><br>
>><br>
>><br>
><br>
> _______________________________________________<br>
> yt-users mailing list<br>
> <a href="mailto:yt-users@lists.spacepope.org" target="_blank">yt-users@lists.spacepope.org</a><br>
> <a href="http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org" target="_blank">http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org</a><br>
><br>
><br>
-------------- next part --------------<br>
An HTML attachment was scrubbed...<br>
URL: <<a href="http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20140926/7fca96b5/attachment.htm" target="_blank">http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20140926/7fca96b5/attachment.htm</a>><br>
<br>
------------------------------<br>
<br>
Subject: Digest Footer<br>
<br>
_______________________________________________<br>
yt-users mailing list<br>
<a href="mailto:yt-users@lists.spacepope.org" target="_blank">yt-users@lists.spacepope.org</a><br>
<a href="http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org" target="_blank">http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org</a><br>
<br>
<br>
------------------------------<br>
<br>
End of yt-users Digest, Vol 79, Issue 35<br>
****************************************<br>
</blockquote></div><br></div></div></div>
<br>_______________________________________________<br>
yt-users mailing list<br>
<a href="mailto:yt-users@lists.spacepope.org" target="_blank">yt-users@lists.spacepope.org</a><br>
<a href="http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org" target="_blank">http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org</a><br>
<br></blockquote></div><br></div></div>