[yt-users] install failure

Mordecai-Mark Mac Low mordecai at amnh.org
Wed Oct 1 06:42:49 PDT 2014


Hi Matt,

good call!

importing matplotlib.pyplot resulted in an abort out of python to the shell prompt:

bash-3.2$ which python
/Users/mordecai/bin/yt-x86_64/bin/python
bash-3.2$ python
Python 2.7.8 (default, Sep 28 2014, 20:55:56) 
[GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.51)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import numpy
>>> import matplotlib.pyplot
Abort trap: 6
bash-3.2$ python
Python 2.7.8 (default, Sep 28 2014, 20:55:56) 
[GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.51)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import h5py
>>> 

- Mordecai


On Oct 1, 2014, at 9:20, <yt-users-request at lists.spacepope.org> <yt-users-request at lists.spacepope.org> wrote:

> Date: Sun, 28 Sep 2014 21:43:38 -0500
> From: Matthew Turk <matthewturk at gmail.com>
> To: Discussion of the yt analysis package
> 	<yt-users at lists.spacepope.org>
> Subject: Re: [yt-users] Fwd: install failure
> Message-ID:
> 	<CALO3=5Ew7ni1YAdn1V8zUPfOG0U8OA3+PR_Su97gbntA3A8nkw at mail.gmail.com>
> Content-Type: text/plain; charset=UTF-8
> 
> Hi Mordecai,
> 
> On Sun, Sep 28, 2014 at 9:04 PM, Nathan Goldbaum <nathan12343 at gmail.com> wrote:
>> 
>> 
>> On Sun, Sep 28, 2014 at 6:57 PM, Mordecai-Mark Mac Low <mordecai at amnh.org>
>> wrote:
>>> 
>>> Here?s are examples of the problem. yt fails immediately with any usage.
>>> As you can see, I don?t have a lot of information here!
>>> 
>>> 
>>> [yt-x86_64] sagittariusb 1 % yt
>>> Abort
>>> [yt-x86_64] sagittariusb 2 % yt --help
>>> Abort
>>> [yt-x86_64] sagittariusb 3 % python
>>> Python 2.7.8 (default, Sep 28 2014, 20:55:56)
>>> [GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.51)] on darwin
>>> Type "help", "copyright", "credits" or "license" for more information.
>>>>>> import yt
>>> Abort
>>> [yt-x86_64] sagittariusb 4 %
>> 
> 
> My guess, which could be far off, is that it's a module yt is
> importing.  I would try these things:
> 
> import numpy
> import matplotlib.pyplot
> import h5py
> 
> and see if any of those error out.  If they don't, then I'll send over
> a script importing each component of yt which you can run which will
> identify which particular submodule.  I suspect a symbol is unresolved
> or causing some issue; we often see similar behavior on systems where
> the linking is tricky.
> 
> -Matt
> 
> 

--
Mordecai-Mark Mac Low 		Curator & Professor
+1-212-496-3443         	Department of Astrophysics
+1-212-769-5007 (fax)   	American Museum of Natural History
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