[yt-users] Python SSL failure, yt3, osx

Wed Oct 1 06:20:17 PDT 2014

I tried this on another mac with a fresh install of 10.9, and it worked
without this path fix.  So I think that there's something else that I've
done that causes this error.  I'm going to try to install homebrew with
that, and see if it breaks the openssl path.  Unless anyone objects, I'm
going to kill that PR, it's not a general fix for osx, just for osx PLUS
whatever else happened that's missing.

d.

On Wed, Sep 24, 2014 at 3:05 PM, David Collins <dcollins4096 at gmail.com>
wrote:

> I think that Jeff's fix worked.  I've made a PR (I can withdraw it if Jeff
> would rather spearhead the PR)
>
> I did the PR on the default (stable) head, should I do it on the dev tip
> as well?
>
> d.
>
> On Wed, Sep 24, 2014 at 2:48 PM, Chris Malone <chris.m.malone at gmail.com>
> wrote:
>
>> I take back what I said before.  I also had issues with SSL because I'm
>> behind a proxy and for some reason the proxy environment variables weren't
>> being honored.  I think reinstalling OpenSSL didn't fix the issue for me.
>>
>> What I did change, however, was making mercurial use SSH instead of HTTPS
>> to clone the yt repo - and that seemed to work.  I changed these two lines
>> from '...clone https://bitbucket...' to 'clone ssh://hg@bitbucket...'
>>
>> https://bitbucket.org/yt_analysis/yt/src/4cf5c5369df9b012759ab979330d8e356d1b0e00/doc/install_script.sh?at=yt#cl-832
>>
>> https://bitbucket.org/yt_analysis/yt/src/4cf5c5369df9b012759ab979330d8e356d1b0e00/doc/install_script.sh?at=yt#cl-836
>>
>> That said, Jeff's suggestion is probably a better fix, at least for
>> something that should get pushed back to the install script.
>>
>> On Wed, Sep 24, 2014 at 11:55 AM, Nathan Goldbaum <nathan12343 at gmail.com>
>> wrote:
>>
>>> Shoot, unfortunately the OSX machines I have access to are on 10.8, so I
>>> can't reproduce this or debug it here.
>>>
>>> If Jeff's suggestion works, we'd very much appreciate getting a pull
>>> request with the fixes.
>>>
>>> On Wed, Sep 24, 2014 at 10:47 AM, j s oishi <jsoishi at gmail.com> wrote:
>>>
>>>> Hi David,
>>>>
>>>> I added PY_CFLAGS and dumped it here:
>>>>
>>>> ( ./configure --prefix=${DEST_DIR}/ ${PYCONF_ARGS} CFLAGS=${PY_CFLAGS} 2>&1 ) 1>> ${LOG_FILE} || do_exit
>>>>
>>>>
>>>> yt builds python on this line,
>>>>
>>>>
>>>> https://bitbucket.org/yt_analysis/yt/src/4cf5c5369df9b012759ab979330d8e356d1b0e00/doc/install_script.sh?at=yt#cl-793
>>>>
>>>> and you should be able to do the exact same trick...I'd do it, but I
>>>> don't have a mac to test it on.
>>>>
>>>> j
>>>>
>>>> On Wed, Sep 24, 2014 at 1:40 PM, David Collins <dcollins4096 at gmail.com>
>>>> wrote:
>>>>
>>>>>
>>>>> Thanks a ton for the input.
>>>>>
>>>>> Nathan:  I've put the full log here:
>>>>> http://nazare.physics.fsu.edu/yt_install.log.  I re-pasted the last
>>>>> bunch of lines below, what I pasted before was from my n-th attempt, so was
>>>>> flawed.  The prior \aleph_0 lines were seemingly successful byt-compiling
>>>>> statments about mercurial.
>>>>>
>>>>> Jeff-- What's the yt analog of the deadalus PY_CFLAGS?  I looked in
>>>>> the script but didn't see a similar flag.
>>>>>
>>>>> The odd bit with this is that I did this successfully once a year ago
>>>>> on the same machine.  I think the successful install was _before_ I
>>>>> installed homebrew.
>>>>>
>>>>> Do you think it broke with the heartblead security patch?  (Or, the
>>>>> fact that I"m on an earlier openssl?)  Does the homebrew re-install of
>>>>> openssl take care of the problem, or is doing it from source necessary?
>>>>>
>>>>> d.
>>>>>
>>>>> byte-compiling
>>>>> /Users/dcollins/local-2014-09-23-yt3/lib/python2.7/site-packages/mercurial/worker.py
>>>>> to worker.pyc
>>>>> running install_scripts
>>>>> copying build/scripts-2.7/hg ->
>>>>> /Users/dcollins/local-2014-09-23-yt3/bin
>>>>> changing mode of /Users/dcollins/local-2014-09-23-yt3/bin/hg to 755
>>>>> running install_egg_info
>>>>> Writing
>>>>> /Users/dcollins/local-2014-09-23-yt3/lib/python2.7/site-packages/mercurial-3.1-py2.7.egg-info
>>>>> using https://bitbucket.org/yt_analysis/yt-supplemental/
>>>>> sending capabilities command
>>>>> abort: Python SSL support not found
>>>>> using https://bitbucket.org/yt_analysis/yt/
>>>>> sending capabilities command
>>>>> abort: Python SSL support not found
>>>>> abort: repository /Users/dcollins/local-2014-09-23-yt3/src/yt-hg/ not
>>>>> found!
>>>>> /Users/dcollins/local-2014-09-23-yt3/bin/python2.7: can't open file
>>>>> '/Users/dcollins/local-2014-09-23-yt3/src/yt-hg//distribute_setup.py':
>>>>> [Errno 2] No such file or directory
>>>>>
>>>>>
>>>>> On Wed, Sep 24, 2014 at 12:58 PM, Chris Malone <
>>>>> chris.m.malone at gmail.com> wrote:
>>>>>
>>>>>> I had the same issue, even with homebrew.  I solved it by doing what
>>>>>> Fernando mentioned - reinstall openssl.
>>>>>>
>>>>>> On Wed, Sep 24, 2014 at 10:53 AM, Fernando Becerra <
>>>>>> becerrafernando at gmail.com> wrote:
>>>>>>
>>>>>>> I had the same issue a few days ago when I tried to install yt using
>>>>>>> the install script on a brand new macbook pro with OSX 10.9. I ended up
>>>>>>> reinstalling the openssl libraries from source and that worked for me.
>>>>>>>
>>>>>>> Fernando.
>>>>>>>
>>>>>>> On Sep 24, 2014, at 12:10 PM, Nathan Goldbaum <nathan12343 at gmail.com>
>>>>>>> wrote:
>>>>>>>
>>>>>>> Hmm, interesting. I have access to a home brew-less Mac mini at the
>>>>>>> office, so I can test this out later today and try to reproduce and figure
>>>>>>> out a fix.
>>>>>>>
>>>>>>> On Wednesday, September 24, 2014, j s oishi <jsoishi at gmail.com>
>>>>>>> wrote:
>>>>>>>
>>>>>>>> Hi Nathan,
>>>>>>>>
>>>>>>>> Any chance you had homebrew on that machine? We've been finding
>>>>>>>> this issue when homebrew is not installed. 10.9 seems to have moved the
>>>>>>>> location of the ssl headers, so python just doesn't build _ssl, and a whole
>>>>>>>> bunch of things that depend on it fail. When homebrew is installed, it does
>>>>>>>> something or other to help the python build find ssl. I have no idea what
>>>>>>>> that might be; this is pure cowboy science on my part.
>>>>>>>>
>>>>>>>> j
>>>>>>>>
>>>>>>>> On Wed, Sep 24, 2014 at 12:01 PM, Nathan Goldbaum <
>>>>>>>> nathan12343 at gmail.com> wrote:
>>>>>>>>
>>>>>>>>> Hi Dave,
>>>>>>>>>
>>>>>>>>> I think the original error might have occurred earlier in the log.
>>>>>>>>> Can you upload the full install log somewhere?
>>>>>>>>>
>>>>>>>>> FWIW, I successfully built yt-3 from the install script on OSX
>>>>>>>>> 10.9 the last time we updated the dependencies.
>>>>>>>>>
>>>>>>>>> Nathan
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Wednesday, September 24, 2014, David Collins <
>>>>>>>>> dcollins4096 at gmail.com> wrote:
>>>>>>>>>
>>>>>>>>>> Hi, Everybody--
>>>>>>>>>>
>>>>>>>>>> I have a potentially dumb question.  I'm installing yt3.0 (a
>>>>>>>>>> fresh install) on osx 10.9, and I get the following error.  It looks like
>>>>>>>>>> the error is coming from the hg clone, for some reason the newly installed
>>>>>>>>>> python can't find SSL.  I can use another install of hg on this machine
>>>>>>>>>> just fine.  Has anyone else seen this, and do you know if there's an easy
>>>>>>>>>> fix?
>>>>>>>>>>
>>>>>>>>>> Thanks!
>>>>>>>>>> d.
>>>>>>>>>>
>>>>>>>>>> Using curl
>>>>>>>>>> Using shasum -a 512
>>>>>>>>>> Cloning yt
>>>>>>>>>> Setting YT_DIR=/Users/dcollins/local-2014-09-23-yt3/src/yt-hg/
>>>>>>>>>> Installing distribute
>>>>>>>>>> ********************************************
>>>>>>>>>>         FAILURE REPORT:
>>>>>>>>>> ********************************************
>>>>>>>>>>
>>>>>>>>>> abort: repository /Users/dcollins/local-2014-09-23-yt3/src/yt-hg/
>>>>>>>>>> not found!
>>>>>>>>>> /Users/dcollins/local-2014-09-23-yt3/bin/python2.7: can't open
>>>>>>>>>> file '/Users/dcollins/local-2014-09-23-yt3/src/yt-hg//distribute_setup.py':
>>>>>>>>>> [Errno 2] No such file or directory
>>>>>>>>>> using https://bitbucket.org/yt_analysis/yt-supplemental/
>>>>>>>>>> sending capabilities command
>>>>>>>>>> abort: Python SSL support not found
>>>>>>>>>> using https://bitbucket.org/yt_analysis/yt/
>>>>>>>>>> sending capabilities command
>>>>>>>>>> abort: Python SSL support not found
>>>>>>>>>> abort: repository /Users/dcollins/local-2014-09-23-yt3/src/yt-hg/
>>>>>>>>>> not found!
>>>>>>>>>> /Users/dcollins/local-2014-09-23-yt3/bin/python2.7: can't open
>>>>>>>>>> file '/Users/dcollins/local-2014-09-23-yt3/src/yt-hg//distribute_setup.py':
>>>>>>>>>> [Errno 2] No such file or directory
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> --
>>>>>>>>>> -- Sent from a computer.
>>>>>>>>>>
>>>>>>>>>
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