[yt-users] yt installation issues

[Kacper Kowalik]

On 05/13/2014 10:09 PM, Kaylea Nelson wrote:
> Cool, that seems to have run ok! But it didn't generate the bin/activate
> script?

Unfortunately it didn't. I've pasted the activate script on pastebin[1]
so you can download it manually. There's only one line you need to edit:

VIRTUAL_ENV="/home/xarth/yt-x86_64"

you'll need to change path so that it points to your yt-x86_64 dir.

Activate script really boils down to exporting PATH, LD_LIBRARY_PATH,
PYTHONPATH. You could also use the same 'export' snippet that you've
needed for installation and put it into your .bashrc to have yt
activated permanently.

Cheers,
Kacper

[1] http://paste.yt-project.org/show/4620/

> 
> On Tue, May 13, 2014 at 3:21 PM, Kacper Kowalik <xarthisius.kk at gmail.com>wrote:
> 
>> On 13.05.2014 20:00, Kaylea Nelson wrote:
>>> Hi Matt,
>>
>>> Failure.  Check
>>>
>> /home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/yt_install.log.
>>>  The last 10 lines are above.
>>>
>>>
>>> On a related note, whenever I install either version, the install also
>>> fails when installing ZeroMQ:
>>>
>>> Installing mercurial-3.0
>>> Setting
>>>
>> YT_DIR=/home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/src/yt-hg/
>>> Installing distribute
>>> Installing pip
>>> Installing numpy-1.7.1
>>> Installing matplotlib-1.3.0
>>> Installing ZeroMQ
>>> ********************************************
>>>         FAILURE REPORT:
>>> ********************************************
>>>
>>>   CXX    libzmq_la-ipc_address.lo
>>>   CXX    libzmq_la-ipc_connecter.lo
>>> stream_engine.hpp(97): error #82: storage class is not first
>>>           const static size_t greeting_size = 12;
>>>                 ^
>>>
>>> compilation aborted for ipc_connecter.cpp (code 2)
>>> make[1]: *** [libzmq_la-ipc_connecter.lo] Error 1
>>> make[1]: Leaving directory
>>>
>> `/lustre/home/client/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/src/zeromq-3.2.4/src'
>>> make: *** [install-recursive] Error 1
>>>
>>> ********************************************
>>> ********************************************
>>> Failure.  Check
>>>
>> /home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/yt_install.log.
>>>  The last 10 lines are above.
>>>
>>> But I just fix the const static to static const in stream_engine.hpp and
>> it
>>> gets past that particular error (in the stable version anyway). Let me
>> know
>>> if I shouldn't be messing with that.
>>>
>>> Actually, it appears to get YT_DIR the correctly the first time through,
>>> but when I restart it after fixing the ZeroMQ bug, it fails to set
>> YT_DIR.
>>> So, just to be extra thorough, I tried manually setting YT_DIR on l.54 to
>>>
>> /home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64/src/yt-hg/
>>> (as it was set the first time). If I do this, it gets past the above
>> error
>>> and I ultimately get the same error as for the stable version (the
>> original
>>> reason of this email):
>>>
>>> [hit enter]
>>>
>>> Awesome!  Here we go.
>>>
>>> Using wget
>>> Using sha512sum
>>> Downloading xray_emissivity.h5 from yt-project.org
>>> Installing distribute
>>> Installing pip
>>> Installing ZeroMQ
>>> Installing pyzmq-13.1.0 (arguments:
>>> '--zmq=/home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64')
>>> Installing tornado-3.1
>>> Installing ipython-1.1.0
>>> Installing h5py-2.1.3
>>> Installing Cython-0.19.1
>>> Installing Forthon-0.8.11
>>> Installing nose-1.3.0
>>> Installing python-hglib-1.0
>>> Installing sympy-0.7.3
>>
>> Hi Kaylea!
>>
>> [snip]
>>> Doing yt update, wiping local changes and updating to branch yt-3.0
>>> Installing yt
>>
>> [snip]
>>
>> at this point you should have everything that's required to build yt.
>> Let's try to install it manually outside of the install_script.sh.
>> Setting following env vars should do the trick:
>>
>> export
>> YT_DIR=/home/fas/nagai/kln26/programs/yt_dir/yt_bleedingedge/yt-x86_64
>> export PATH=$YT_DIR/bin:$PATH
>> export LD_LIBRARY_PATH=$YT_DIR/lib:$LD_LIBRARY_PATH
>> export PYTHONPATH=$YT_DIR/lib/python2.7/site-packages:$PYTHONPATH
>> export HDF5_DIR=$YT_DIR
>> export PNG_DIR=$YT_DIR
>>
>> then
>>
>> cd $YT_DIR/src/yt-hg
>> hg update -C yt-3.0
>> python setup.py install --prefix=$YT_DIR
>>
>> Could you please try it out? In the mean time I'll try to setup Red Hat
>> 6 based environment to reproduce your issue.
>>
>> Cheers,
>> Kacper
>>
>>
>>
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>>
>>
> 
> 
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