[yt-users] SlicePlot script stuck

Jean-Claude Passy jcpassy at gmail.com
Tue Sep 3 08:30:09 PDT 2013


Hi Jeff,

thanks for your quick reply.
Nope, ii still gets stuck at the same place.

Cheers,

JC

On Sep 3, 2013, at 5:09 PM, j s oishi <jsoishi at gmail.com> wrote:

> Hi JC,
> 
> the first thing that comes to mind is the matplotlib backend you are using is trying to open a window remotely (even if it doesn't actually use it for anything or ever even display it). Can you try doing
> 
> python script.py -d Agg
> 
> and see if that works remotely?
> 
> j
> 
> 
> On Tue, Sep 3, 2013 at 11:18 AM, Jean-Claude Passy <jcpassy at gmail.com> wrote:
> Hi all,
> 
> I am running a simple script using SlicePlot (see attached) on a small dataset (only ~ 200k cells). While it works without any problem on my laptop OS X 10.8.4, it gets stuck after saving the first slice (see below) on a remote Linux machine. 
> I have run the script on the same data on both machines, have installed the latest dev version of yt, even removed the *.yt files. But it did not help. 
> 
> Does anyone have a suggestion?
> 
> Thanks a lot,
> 
> JC
> 
> 
> 
> -------------------------------------------------------------------------------------------------------------------------------------------------
> [ 7:48:12] seawolf2:$ python2.7 ~/Enzo/python/PlotEnzoDataMultiple.py 0 0 1.0 
> yt : [INFO     ] 2013-09-03 07:48:34,165 Parameters: current_time              = 0
> yt : [INFO     ] 2013-09-03 07:48:34,165 Parameters: domain_dimensions         = [32 32 32]
> yt : [INFO     ] 2013-09-03 07:48:34,166 Parameters: domain_left_edge          = [ 0.  0.  0.]
> yt : [INFO     ] 2013-09-03 07:48:34,167 Parameters: domain_right_edge         = [ 1.  1.  1.]
> yt : [INFO     ] 2013-09-03 07:48:34,168 Parameters: cosmological_simulation   = 0.0
> loading  DD0000/CE0000
> yt : [INFO     ] 2013-09-03 07:48:34,174 Getting the binary hierarchy
> Parsing Hierarchy100% |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Time: 00:00:00 
> yt : [INFO     ] 2013-09-03 07:48:34,181 Gathering a field list (this may take a moment.)
> yt : [INFO     ] 2013-09-03 07:48:34,220 Adding unknown field Grav_Potential to list of fields
> level   # grids        # cells       # cells^3
> ----------------------------------------------
>   0          1           32768              31
>   1          1           13824              23
>   2          6           56320              38
>   3         14           85936              44
> ----------------------------------------------
>             22          188848
> 
> 
> t = 0.00000000e+00 = 0.00000000e+00 s = 0.00000000e+00 years
> 
> Smallest Cell:
>         Width: 4.431e-14 Mpc
>         Width: 4.431e-14 mpc
>         Width: 4.431e-11 kpc
>         Width: 4.431e-08 pc
>         Width: 3.906e-03 1
>         Width: 3.906e-03 aye
>         Width: 3.906e-03 unitary
>         Width: 9.139e-03 au
>         Width: 1.966e+00 rsun
>         Width: 8.495e+05 miles
>         Width: 1.367e+06 km
>         Width: 1.367e+11 cm
> yt : [INFO     ] 2013-09-03 07:48:34,600 xlim = 0.000000 1.000000
> yt : [INFO     ] 2013-09-03 07:48:34,600 ylim = 0.000000 1.000000
> yt : [INFO     ] 2013-09-03 07:48:34,600 Making a fixed resolution buffer of (Density) 800 by 800
> yt : [INFO     ] 2013-09-03 07:48:34,610 xlim = 0.000000 1.000000
> yt : [INFO     ] 2013-09-03 07:48:34,610 ylim = 0.000000 1.000000
> yt : [INFO     ] 2013-09-03 07:48:34,610 Making a fixed resolution buffer of (Density) 800 by 800
> yt : [INFO     ] 2013-09-03 07:48:34,619 Making a fixed resolution buffer of (Density) 800 by 800
> yt : [INFO     ] 2013-09-03 07:48:35,467 Getting particle_position_y using ParticleIO
> yt : [INFO     ] 2013-09-03 07:48:35,471 Getting particle_position_z using ParticleIO
> yt : [INFO     ] 2013-09-03 07:48:35,669 Getting particle_position_y using ParticleIO
> yt : [INFO     ] 2013-09-03 07:48:35,674 Getting particle_position_z using ParticleIO
> yt : [INFO     ] 2013-09-03 07:48:35,681 Making a fixed resolution buffer of (Density) 800 by 800
> yt : [INFO     ] 2013-09-03 07:48:35,881 Getting particle_position_y using ParticleIO
> yt : [INFO     ] 2013-09-03 07:48:35,885 Getting particle_position_z using ParticleIO
> yt : [INFO     ] 2013-09-03 07:48:35,892 Making a fixed resolution buffer of (Density) 800 by 800
> yt : [INFO     ] 2013-09-03 07:48:36,091 Getting particle_position_y using ParticleIO
> yt : [INFO     ] 2013-09-03 07:48:36,095 Getting particle_position_z using ParticleIO
> yt : [INFO     ] 2013-09-03 07:48:36,102 Saving plot Plots/Density/x-axis/CE0000_Slice_x_Density.png
> 
> -------------------------------------------------------------------------------------------------------------------------------------------------
> 
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