[yt-users] Parallel yt on Kraken

[Nathan Goldbaum]

Hi Hilary,

It occurs to me that you might also be able to get away with using
matplotlib 1.2.1.


On Thu, Oct 10, 2013 at 10:03 AM, Matthew Turk <matthewturk at gmail.com>wrote:

> Hi Hilary,
>
> This is increasingly looking like a matplotlib bug -- but there is one
> other thing you could try.  Looking at the matplotlib source, it looks
> like it checks HOME, USERPROFILE and TMP to see if they are None.  So
> you could try setting one of those three variables to the current
> working directory of your script.  Otherwise, maybe file an issue with
> matplotlib?
>
> Sorry ... :(
>
> -Matt
>
> On Thu, Oct 10, 2013 at 12:49 PM, Hilary Egan <hilaryye at gmail.com> wrote:
> > Unfortunately setting XDG_CONFIG_HOME as the working directory didn't
> work.
> > I get this error message http://paste.yt-project.org/show/3941/ which
> > appears to be the same problem as before.
> >
> > -Hilary
> >
> >> ________________________________
> >>
> >> Hi Hilary,
> >>
> >> Yeah ... this is actually a problem with funny home directories and
> >> Matplotlib 1.3.0.  I think this is a problem specific to machines
> >> where the home directories aren't visible.  You may be able to either
> >> set the environment variable XDG_CONFIG_HOME to the working directory
> >> for some success.
> >>
> >> Additionally, I think that yt.pmods no longer works with matplotlib
> >> 1.3.0, too, but it looks like you're using yt.mods, so that's good.
> >>
> >> Could you let us know if that works?
> >>
> >> -Matt
> >>
> >> On Wed, Oct 9, 2013 at 10:42 PM, Hilary Egan <hilaryye at gmail.com>
> >> wrote:
> >> > Perhaps inadvisedly I'm trying to get parallel yt to work on kraken.
> As
> >> > suggested in the docs faq I made sure I loaded the PrgEnv-gnu module
> and
> >> > pip
> >> > installed mpi4py with env MPICC=cc. Although this worked fine as is on
> >> > my
> >> > local machine, yt then complained about missing libraries, I guessed
> >> > because
> >> > of some sort of static linking/build problem, so I copied all of the
> >> > libraries it complained about to $YT_DIR/lib (full list is below). Now
> >> > it's
> >> > giving me a completely indecipherable message about matplotlib which
> >> > I've
> >> > copied here: http://paste.yt-project.org/show/3939/. I only see this
> >> > error
> >> > when I try and run yt with the --parallel flag, so I'm guessing it
> must
> >> > be
> >> > related. Any advice would be greatly appreciated!
> >> >
> >> > Thanks,
> >> > Hilary
> >> >
> >> > ______
> >> >
> >> > Missing libraries yt complained about and I added:
> >> >
> >> > libgfortran.so.3
> >> > libscicpp_gnu.so.1
> >> > libsci_gnu_mp.so.1
> >> > libstdc++.so.6
> >> > libfttw3.so.3
> >> > libfftw3f.so.3
> >> > libmpich_gnu.so.gnu-46-1
> >> > libmpl.so.0
> >> > libpmi.so.0
> >> > libgomp.so.1
> >> > libquadmath.so.0
> >> > libmpich.so.1
> >> > libgcc_s.so.1
> >> > libportals.so.1
> >> > libalpsutil.so
> >> > libalpslli.so
> >> >
> >> >
> >> > _______________________________________________
> >> > yt-users mailing list
> >> > yt-users at lists.spacepope.org
> >> > http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
> >>
> >>
> >
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> >
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