[yt-users] plot with source region and field parameters

[David Collins]

That seems to work for now, thanks!

I'll file a bug report on this.

Thanks a ton!


On Thu, May 9, 2013 at 4:36 PM, Nathan Goldbaum <nathan12343 at gmail.com>wrote:

> Hey Dave,
>
> Have you tried passing the field_parameters in as a kwargs dict?
>  Something like this:
>
> field_parameters = {'avg_vx',7}
> proj = oober.pf.h.proj(2,'linewidth',source=region, **field_parameters)
>
> Although as Matt notes, ideally it should be possible to avoid the kwargs
> construction.
>
> -Nathan
>
> On May 9, 2013, at 3:20 PM, david collins <dcollins4096 at gmail.com> wrote:
>
> > Hi, Everybody--
> >
> > I have a field that I have defined that uses a field_parameter, but I
> don't seem to be able to get it to work with a projection.
> >
> > >>> region
> > AMRRegion (time0050): center=[ 0.5         0.03369141  0.68457031],
> left_edge=[ 0.          0.00195312  0.63378906], right_edge=[ 1.
>  0.06542969  0.73535156]
> >
> > def linewidth(field,data):
> >     avg_vx = data.get_field_parameter('avg_vx')
> >     return (data['x-velocity']-avg_vx)**2
> > add_field('linewidth',function=linewidth,
> validators=[ValidateParameter('avg_vx')])
> > avg_vx = 7
> > region.set_field_parameter('avg_vx',avg_vx)
> > print region['linewidth'].min()
> > print region.get_field_parameter('avg_vx')
> >
> > which yields expected output,
> > 1.15751883639e-07
> > 7
> >
> > But trying to make a projection of that source gives the error below.
>  Is it obvious what I'm doing wrong? I can plot 'Density' just fine.
> >
> > Thanks!
> >
> > >>> proj = oober.pf.h.proj(2,'linewidth',source=region)
> > Initializing tree  0 /  4100%
> ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
> Time: 00:00:00
> > Traceback (most recent call last):
>
>   | ETA:  --:--:--
> >   File "<stdin>", line 1, in <module>
> >   File
> "/nics/b/home/collins/local_2013_03_12/src/yt-hg/yt/data_objects/data_containers.py",
> line 1758, in __init__
> >     self._refresh_data()
> >   File
> "/nics/b/home/collins/local_2013_03_12/src/yt-hg/yt/data_objects/data_containers.py",
> line 318, in _refresh_data
> >     self.get_data()
> >   File
> "/nics/b/home/collins/local_2013_03_12/src/yt-hg/yt/data_objects/data_containers.py",
> line 1859, in get_data
> >     self._add_level_to_tree(tree, level, fields)
> >   File
> "/nics/b/home/collins/local_2013_03_12/src/yt-hg/yt/data_objects/data_containers.py",
> line 1981, in _add_level_to_tree
> >     self._add_grid_to_tree(tree, grid, fields, zero_out, dls)
> >   File
> "/nics/b/home/collins/local_2013_03_12/src/yt-hg/yt/data_objects/data_containers.py",
> line 1925, in _add_grid_to_tree
> >     for fd in self._get_data_from_grid(grid, fields)]
> >   File
> "/nics/b/home/collins/local_2013_03_12/src/yt-hg/yt/data_objects/data_containers.py",
> line 93, in save_state
> >     tr = func(self, grid, field, *args, **kwargs)
> >   File
> "/nics/b/home/collins/local_2013_03_12/src/yt-hg/yt/data_objects/data_containers.py",
> line 2003, in _get_data_from_grid
> >     return [grid[field] * bad_points for field in fields]
> >   File
> "/nics/b/home/collins/local_2013_03_12/src/yt-hg/yt/data_objects/grid_patch.py",
> line 157, in __getitem__
> >     self.get_data(key)
> >   File
> "/nics/b/home/collins/local_2013_03_12/src/yt-hg/yt/data_objects/grid_patch.py",
> line 200, in get_data
> >     self._generate_field(field)
> >   File
> "/nics/b/home/collins/local_2013_03_12/src/yt-hg/yt/data_objects/grid_patch.py",
> line 132, in _generate_field
> >     self.pf.field_info[field].check_available(self)
> >   File
> "/nics/b/home/collins/local_2013_03_12/src/yt-hg/yt/data_objects/field_info_container.py",
> line 364, in check_available
> >     validator(data)
> >   File
> "/nics/b/home/collins/local_2013_03_12/src/yt-hg/yt/data_objects/field_info_container.py",
> line 440, in __call__
> >     raise NeedsParameter(doesnt_have)
> > yt.data_objects.field_info_container.NeedsParameter: (['avg_vx'])
> >
> >
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