[yt-users] Installing yt on stampede

Nathan Goldbaum nathan12343 at gmail.com
Sun Jan 13 12:50:51 PST 2013

Hi Munier,

You should be able to complete the install after setting INST_OMQ in the
install script to zero.  I'm away from my computer so I can't check if
that's the right variable, but it's something like that.  Since this
library is needed by the ipython notebook, you will not be able to use it
for now.

In the long run we should figure out how to bundle the UUID library or
failing that contact the TACC sysadmins about setting up a yt module.

Let us know if that helps,


On Jan 13, 2013, at 12:29 PM, Munier Azzam Salem <msalem at astro.columbia.edu>

sorry, some details that might be important:

gcc (GCC) 4.4.6 20120305 (Red Hat 4.4.6-4)
running in bash

On Sun, Jan 13, 2013 at 3:26 PM, Munier Azzam Salem <
msalem at astro.columbia.edu> wrote:

> Hi yt,
>      I've just tried installing yt on the new TACC Stampede system<https://www.xsede.org/web/guest/tacc-stampede>(just a basic build of the stable release). Things were going quite
> smoothly, until ...
> *Installing BZLIB*
> *Installing ZLIB*
> *Installing PNG*
> *Installing FreeType2*
> *Installing HDF5*
> *Installing SQLite3*
> *Installing Python.  This may take a while, but don't worry.  YT loves
> you.*
> *Setting YT_DIR=/home1/01686/msalem/yt-x86_64/src/yt-hg/*
> *Installing distribute*
> *Installing pip*
> *Installing numpy-1.6.1 (arguments: 'numpy-1.6.1')*
> *Installing matplotlib-1.1.0 (arguments: 'matplotlib-1.1.0')*
> *Installing ZeroMQ*
> **********************************************
> *        FAILURE REPORT:*
> **********************************************
> *
> *
> *checking whether we are using Intel C++ compiler... no*
> *checking whether we are using Sun Studio C++ compiler... no*
> *checking whether we are using clang C++ compiler... no*
> *checking whether we are using gcc >= 4 C++ compiler... yes*
> *checking whether to enable debugging information... no*
> *checking whether to enable code coverage... no*
> *checking for pthread_create in -lpthread... yes*
> *checking for sem_init in -lrt... yes*
> *checking for uuid_generate in -luuid... no*
> *configure: error: cannot link with -luuid, install uuid-dev.*
> *
> *
> **********************************************
> **********************************************
> *Failure.  Check /home1/01686/msalem/yt-x86_64/yt_install.log.  The last
> 10 lines are above.*
> Does anyone know what's going wrong here? Thanks!
>       best,
>         Munier
> --
> Munier A. Salem // 845.489.6450

Munier A. Salem // 845.489.6450

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