[yt-users] Error on installation of yt on system python
Mark Kremenetsky
mdk at sgi.com
Sun Feb 17 11:54:38 PST 2013
Thank you Matt.
I will post my question on those mailing lisst.
Talk to you later,
Mark
On 02/17/2013 06:13 PM, Matthew Turk wrote:
> Hi Mark,
>
> On Sun, Feb 17, 2013 at 11:07 AM, Mark Kremenetsky <mdk at sgi.com> wrote:
>> Gentlemen,
>> I wonder if anyone of you ever compiled HDF5 for Intel Phi ( MIC) processor
>> ?
> I haven't, personally. However, I do know that several people are
> actively using Enzo on Stampede, even if not yet on the MIC
> components. I would suggest bringing this question to the enzo-dev
> mailing list:
>
> https://groups.google.com/forum/#!forum/enzo-dev
>
> People here may have an idea, and I'd also be happy to correspond with
> you about this off-list, but since you're working specifically with
> Enzo it might be a higher cross-section of interested parties on
> enzo-dev. The HDF-forum might also have a few interested people:
>
> http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org
>
> who can provide some insight. Best wishes,
>
> -Matt
>
>> Thanks,
>> mark
>>
>> On 02/17/2013 03:58 PM, trobolo dinni wrote:
>>
>> Hi Nathan,
>>
>> sorry for the delay in replying.
>>
>> To install yt on the system python I followed the procedure you mentioned:
>> entered the yt directory cloned from bitbucket, run "python setup.py
>> install".
>> I did that again to check another time but the error persists.
>>
>> As I said I just reinstalled the same Ubuntu version on the same computer
>> where before yt was usually installed by following the procedure above and
>> it was normally running.
>>
>> Could reinstall cython help to solve the problem?
>>
>> Thanks,
>> Roberto
>>
>>
>>
>>
>> On 14 February 2013 17:57, Nathan Goldbaum <nathan12343 at gmail.com> wrote:
>>> Hi Trobolo,
>>>
>>> data_point_utilities is a c extension that gets auto generated from a
>>> cython file and then compiled into a shared library when you run the yt
>>> setup script:
>>>
>>> $ cd $YT_HG
>>> $ python setup.py install
>>>
>>> Here $YT_HG is the directory containing the yt source code repository you
>>> cloned from bitbucket.
>>>
>>> Please let us know if you continue to have difficulties installing yt
>>> after running the setup script.
>>>
>>> Cheers,
>>>
>>> Nathan
>>>
>>> On Feb 13, 2013, at 10:49 PM, trobolo dinni
>>> <trobolo.trobolo.dinni5 at gmail.com> wrote:
>>>
>>>> Dear yt users,
>>>>
>>>> I usually install yt on system python, following the procedure suggested
>>>> me in this mailing list some months ago. In general everything goes fine
>>>> with the installation and I can normally use yt.
>>>>
>>>> Now I installed Ubuntu from scratch in my computer (where previously yt
>>>> was installed and running!) and the installation seems to fine, but when I
>>>> insert the command "from yt.mods import * ", I get the following error:
>>>>
>>>>
>>>>
>>>> ---------------------------------------------------------------------------
>>>> ImportError Traceback (most recent call
>>>> last)
>>>>
>>>> /usr/local/lib/python2.7/dist-packages/yt/<ipython console> in
>>>> <module>()
>>>>
>>>> /usr/local/lib/python2.7/dist-packages/yt/yt/mods.py in <module>()
>>>> 56 np.seterr(all = 'ignore')
>>>> 57
>>>> ---> 58 from yt.data_objects.api import \
>>>> 59 BinnedProfile1D, BinnedProfile2D, BinnedProfile3D, \
>>>> 60 data_object_registry, \
>>>>
>>>> /usr/local/lib/python2.7/dist-packages/yt/yt/data_objects/api.py in
>>>> <module>()
>>>> 29 """
>>>> 30
>>>> ---> 31 from grid_patch import \
>>>> 32 AMRGridPatch
>>>> 33
>>>>
>>>> /usr/local/lib/python2.7/dist-packages/yt/yt/data_objects/grid_patch.py
>>>> in <module>()
>>>> 33 from yt.utilities.definitions import x_dict, y_dict
>>>> 34
>>>> ---> 35 from yt.data_objects.data_containers import YTFieldData
>>>> 36 from yt.utilities.definitions import x_dict, y_dict
>>>> 37 from .field_info_container import \
>>>>
>>>>
>>>> /usr/local/lib/python2.7/dist-packages/yt/yt/data_objects/data_containers.py
>>>> in <module>()
>>>> 41 from yt.config import ytcfg
>>>> 42
>>>> ---> 43 from yt.data_objects.derived_quantities import
>>>> GridChildMaskWrapper
>>>> 44 from yt.data_objects.particle_io import
>>>> particle_handler_registry
>>>> 45 from yt.utilities.lib import find_grids_in_inclined_box, \
>>>>
>>>>
>>>> /usr/local/lib/python2.7/dist-packages/yt/yt/data_objects/derived_quantities.py
>>>> in <module>()
>>>> 33 from yt.data_objects.field_info_container import \
>>>> 34 FieldDetector
>>>> ---> 35 from yt.utilities.data_point_utilities import FindBindingEnergy
>>>> 36 from yt.utilities.parallel_tools.parallel_analysis_interface
>>>> import \
>>>> 37 ParallelAnalysisInterface
>>>>
>>>> ImportError: No module named data_point_utilities
>>>>
>>>> I would like to ask if someone has an idea of how can I solve this
>>>> problem.
>>>>
>>>> Thanks,
>>>> Roberto
>>>>
>>>>
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