[yt-users] Error on installation of yt on system python

[Matthew Turk]

Hi Mark,

On Sun, Feb 17, 2013 at 11:07 AM, Mark Kremenetsky <mdk at sgi.com> wrote:
> Gentlemen,
>  I wonder if anyone of you ever compiled HDF5 for Intel Phi ( MIC) processor
> ?

I haven't, personally.  However, I do know that several people are
actively using Enzo on Stampede, even if not yet on the MIC
components.  I would suggest bringing this question to the enzo-dev
mailing list:

https://groups.google.com/forum/#!forum/enzo-dev

People here may have an idea, and I'd also be happy to correspond with
you about this off-list, but since you're working specifically with
Enzo it might be a higher cross-section of interested parties on
enzo-dev.  The HDF-forum might also have a few interested people:

http://mail.hdfgroup.org/mailman/listinfo/hdf-forum_hdfgroup.org

who can provide some insight.  Best wishes,

-Matt

> Thanks,
> mark
>
> On 02/17/2013 03:58 PM, trobolo dinni wrote:
>
> Hi Nathan,
>
> sorry for the delay in replying.
>
> To install yt on the system python I followed the procedure you mentioned:
> entered the yt directory cloned from bitbucket, run "python setup.py
> install".
> I did that again to check another time but the error persists.
>
> As I said I just reinstalled the same Ubuntu version on the same computer
> where before yt was usually installed by following the procedure above and
> it was normally running.
>
> Could reinstall cython help to solve the problem?
>
> Thanks,
>                   Roberto
>
>
>
>
> On 14 February 2013 17:57, Nathan Goldbaum <nathan12343 at gmail.com> wrote:
>>
>> Hi Trobolo,
>>
>> data_point_utilities is a c extension that gets auto generated from a
>> cython file and then compiled into a shared library when you run the yt
>> setup script:
>>
>> $ cd $YT_HG
>> $ python setup.py install
>>
>> Here $YT_HG is the directory containing the yt source code repository you
>> cloned from bitbucket.
>>
>> Please let us know if you continue to have difficulties installing yt
>> after running the setup script.
>>
>> Cheers,
>>
>> Nathan
>>
>> On Feb 13, 2013, at 10:49 PM, trobolo dinni
>> <trobolo.trobolo.dinni5 at gmail.com> wrote:
>>
>> > Dear yt users,
>> >
>> > I usually install yt on system python, following the procedure suggested
>> > me in this mailing list some months ago. In general everything goes fine
>> > with the installation and I can normally use yt.
>> >
>> > Now I installed Ubuntu from scratch in my computer (where previously yt
>> > was installed and running!) and the installation seems to fine, but when I
>> > insert the command "from yt.mods import * ", I get the following error:
>> >
>> >
>> >
>> > ---------------------------------------------------------------------------
>> > ImportError                               Traceback (most recent call
>> > last)
>> >
>> > /usr/local/lib/python2.7/dist-packages/yt/<ipython console> in
>> > <module>()
>> >
>> > /usr/local/lib/python2.7/dist-packages/yt/yt/mods.py in <module>()
>> >      56     np.seterr(all = 'ignore')
>> >      57
>> > ---> 58 from yt.data_objects.api import \
>> >      59     BinnedProfile1D, BinnedProfile2D, BinnedProfile3D, \
>> >      60     data_object_registry, \
>> >
>> > /usr/local/lib/python2.7/dist-packages/yt/yt/data_objects/api.py in
>> > <module>()
>> >      29 """
>> >      30
>> > ---> 31 from grid_patch import \
>> >      32     AMRGridPatch
>> >      33
>> >
>> > /usr/local/lib/python2.7/dist-packages/yt/yt/data_objects/grid_patch.py
>> > in <module>()
>> >      33 from yt.utilities.definitions import x_dict, y_dict
>> >      34
>> > ---> 35 from yt.data_objects.data_containers import YTFieldData
>> >      36 from yt.utilities.definitions import x_dict, y_dict
>> >      37 from .field_info_container import \
>> >
>> >
>> > /usr/local/lib/python2.7/dist-packages/yt/yt/data_objects/data_containers.py
>> > in <module>()
>> >      41 from yt.config import ytcfg
>> >      42
>> > ---> 43 from yt.data_objects.derived_quantities import
>> > GridChildMaskWrapper
>> >      44 from yt.data_objects.particle_io import
>> > particle_handler_registry
>> >      45 from yt.utilities.lib import find_grids_in_inclined_box, \
>> >
>> >
>> > /usr/local/lib/python2.7/dist-packages/yt/yt/data_objects/derived_quantities.py
>> > in <module>()
>> >      33 from yt.data_objects.field_info_container import \
>> >      34     FieldDetector
>> > ---> 35 from yt.utilities.data_point_utilities import FindBindingEnergy
>> >      36 from yt.utilities.parallel_tools.parallel_analysis_interface
>> > import \
>> >      37     ParallelAnalysisInterface
>> >
>> > ImportError: No module named data_point_utilities
>> >
>> > I would like to ask if someone has an idea of how can I solve this
>> > problem.
>> >
>> > Thanks,
>> >                    Roberto
>> >
>> >
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