[yt-users] ramses_reader broken on Lens?

Matthew Turk matthewturk at gmail.com
Wed Jun 8 10:06:07 PDT 2011


Hi Geoffrey,

If I understand your email correctly, you are loading the GNU
environment correctly, but it's not entirely clear to me from reading
it.  I've pushed a fix that will allow ramses_reader to fail silently
on import.  This is in changeset 716698ff4046.

You may get similar errors with Matplotlib.

Loading PE-pgi will only complicate matters.

-Matt

On Wed, Jun 8, 2011 at 10:01 AM,  <gso at physics.ucsd.edu> wrote:
> I thought I might have used PE-pgi, so I went and reinstalled YT with the
> PE-gnu loaded, and installed mpi4py afterwards with the same window
> specifying --home=/ccs/home/geoso/LensYT when I did the python setup.py
> install.  And I'm still getting the same error.  I think I recall if I had
> PE-pgi loaded, mpi4py wouldn't even build.
>
> I've even tried loading pgi to run the script and still the same error.
>
> From
> G.S.
>
>> Hi Geoffrey,
>>
>> This is usually caused by having the wrong programming environment
>> loaded when you run or build yt.  Did you have GNU loaded when you
>> built, and do you have it loaded now?
>>
>> The reason it shows up with Ramses is that Ramses uses C++.
>>
>> -Matt
>>
>> On Wed, Jun 8, 2011 at 9:01 AM,  <gso at physics.ucsd.edu> wrote:
>>> I was trying to test Lens with a fresh install of the devel YT and some
>>> simple projections and I got the following:
>>>
>>>
>>> Traceback (most recent call last):
>>>  File "moviesDens.py", line 3, in <module>
>>>    from yt.mods import *
>>>  File "/autofs/na1_home/geoso/LensYT/src/yt-hg/yt/mods.py", line 71, in
>>> <module>
>>>    from yt.frontends.ramses.api import \
>>>  File
>>> "/autofs/na1_home/geoso/LensYT/src/yt-hg/yt/frontends/ramses/api.py",
>>> line 31, in <module>
>>>    from .data_structures import \
>>>  File
>>> "/autofs/na1_home/geoso/LensYT/src/yt-hg/yt/frontends/ramses/data_structures.py",
>>> line 37, in <module>
>>>    import _ramses_reader
>>> ImportError: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.11' not
>>> found
>>> (required by
>>> /autofs/na1_home/geoso/LensYT/src/yt-hg/yt/frontends/ramses/_ramses_reader.so)
>>>
>>> Is this missing GLIBCXX_3.4.11 YT's problem or should I email the NCCS
>>> sys
>>> admins?
>>>
>>> From
>>> G.S.
>>>
>>> _______________________________________________
>>> yt-users mailing list
>>> yt-users at lists.spacepope.org
>>> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>>>
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