[yt-users] running volume_render.py in a batch script

[Britton Smith]

Hi Shankar,

It's tough to tell from the error output what the issue is.  If you want to
check that it's an mpi4py issue, try running something like this:

from mpi4py import MPI
print MPI.COMM_WORLD.rank

If that fails as well, then it's definitely an issue with mpi4py.  Let us
know how that goes.

Britton

On Thu, Apr 14, 2011 at 11:06 AM, Agarwal, Shankar <sagarwal at ku.edu> wrote:

> Hi,
>
> I have a volume_render.py script that runs fine on the login node on
> NCSA-EMBER. But the same script crashes with the following error when run
> through qsub.
>
> MPI: MPI_COMM_WORLD rank 0 has terminated without calling MPI_Finalize()
> MPI: aborting job
> MPI: Received signal 11
>
>
> My batch script is...
>
> #!/bin/sh -x
> #PBS -l walltime=00:10:00
> #PBS -l mem=32000mb
> #PBS -l ncpus=1
> #PBS -q debug
> #PBS -V
> #PBS -A TG-AST080030N
> #PBS -N movie
> #PBS -m be
> #export MPI_MEMMAP_OFF=1
> cd /gpfs1/u/ac/sagarwal/junk
> mpirun -np 1
> /u/ac/sagarwal/software/enzo/src/yt/doc/yt-x86_64/bin/python2.6
> volume_render.py
>
>
>
> Here are the first few lines of the volume_render.py...
>
> import matplotlib;matplotlib.use("Agg");import pylab
> import numpy as na
> import time
> from yt.config import ytcfg; ytcfg["yt","loglevel"] = '50' ;
> ytcfg["lagos","serialize"] = "False"
>
> from yt.mods import *
> from yt.extensions.volume_rendering import *
> from yt.funcs import *
> mh = na.log10(1.67e-24)
> from mpi4py import MPI
>
>
> Please let me know if it may have something to do with mpi4py.
> Shankar
> _______________________________________________
> yt-users mailing list
> yt-users at lists.spacepope.org
> http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://lists.spacepope.org/pipermail/yt-users-spacepope.org/attachments/20110414/df2bbfc3/attachment.html>