[yt-users] YT installation issues

[Agarwal, Shankar]

Hi Matt,


Below is a longish output from yt_install.log :

gcc -std=c99 -Wno-long-long -O -fomit-frame-pointer -finline-functions -I. -I. -I../src -I../src -UH5_DEBUG_API -DNDEBUG -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_POSIX_SOURCE -D_BSD_SOURCE -c tselect.c  -fPIC -DPIC -o .libs/tselect.lo
tselect.c: In function `test_select_point':
tselect.c:426: warning: passing arg 4 of `H5Sselect_elements' from incompatible pointer type


Running from numpy source directory.
non-existing path in 'numpy/distutils': 'site.cfg'
F2PY Version 2
blas_opt_info:
blas_mkl_info:
  libraries mkl,vml,guide not found in /cvos/shared/apps/intel/mkl/10.0.2.018/lib/em64t/
  libraries mkl,vml,guide not found in /home/ucapsag/enzo3/src/yt/doc/yt-x86_64/lib
  libraries mkl,vml,guide not found in /usr/local/lib64
  libraries mkl,vml,guide not found in /usr/local/lib
  libraries mkl,vml,guide not found in /usr/lib64
  libraries mkl,vml,guide not found in /usr/lib
  NOT AVAILABLE

lapack_mkl_info:
mkl_info:
  libraries mkl,vml,guide not found in /cvos/shared/apps/intel/mkl/10.0.2.018/lib/em64t/
  libraries mkl,vml,guide not found in /home/ucapsag/enzo3/src/yt/doc/yt-x86_64/lib
  libraries mkl,vml,guide not found in /usr/local/lib64
  libraries mkl,vml,guide not found in /usr/local/lib
  libraries mkl,vml,guide not found in /usr/lib64
  libraries mkl,vml,guide not found in /usr/lib
  NOT AVAILABLE

  NOT AVAILABLE

atlas_threads_info:
Setting PTATLAS=ATLAS
  libraries ptf77blas,ptcblas,atlas not found in /home/ucapsag/enzo3/src/yt/doc/yt-x86_64/lib
  libraries lapack_atlas not found in /home/ucapsag/enzo3/src/yt/doc/yt-x86_64/lib


building extension "numpy.core._sort" sources
Generating build/src.linux-x86_64-2.6/numpy/core/include/numpy/config.h
customize GnuFCompiler
Found executable /usr/bin/g77
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found
customize GnuFCompiler
gnu: no Fortran 90 compiler found
gnu: no Fortran 90 compiler found

C compiler: gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC

compile options: '-Inumpy/core/src -Inumpy/core/include -I/home/ucapsag/enzo3/src/yt/doc/yt-x86_64/include/python2.6 -c'
gcc: _configtest.c
gcc -pthread _configtest.o -o _configtest
_configtest.o(.text+0xd): In function `main':
/home/ucapsag/enzo3/src/yt/doc/yt-x86_64/src/numpy-1.3.0/_configtest.c:5: undefined reference to `exp'
collect2: ld returned 1 exit status
_configtest.o(.text+0xd): In function `main':
/home/ucapsag/enzo3/src/yt/doc/yt-x86_64/src/numpy-1.3.0/_configtest.c:5: undefined reference to `exp'
collect2: ld returned 1 exit status
failure.
removing: _configtest.c _configtest.o

compile options: '-Inumpy/core/src -Inumpy/core/include -I/home/ucapsag/enzo3/src/yt/doc/yt-x86_64/include/python2.6 -c'
gcc: _configtest.c
_configtest.c:1: warning: conflicting types for built-in function 'asin'
_configtest.c:2: warning: conflicting types for built-in function 'cos'

BUILDING MATPLOTLIB
            matplotlib: 0.99.1.1
                python: 2.6.3 (r263:75183, Aug 19 2010, 20:38:01)  [GCC
                        3.4.6 20060404 (Red Hat 3.4.6-11)]
              platform: linux2

REQUIRED DEPENDENCIES
                 numpy: 1.3.0
             freetype2: 9.7.3

OPTIONAL BACKEND DEPENDENCIES
                libpng: found, but unknown version (no pkg-config)
                        * Could not find 'libpng' headers in any of
                        * '/usr/local/include', '/usr/include', '.'
               Tkinter: Tkinter: 73770, Tk: 8.4, Tcl: 8.4

/usr/bin/ld: skipping incompatible /usr/lib/libm.so when searching for -lm
/usr/bin/ld: skipping incompatible /usr/lib/libm.a when searching for -lm
/usr/bin/ld: skipping incompatible /usr/lib/libpthread.so when searching for -lpthread
/usr/bin/ld: skipping incompatible /usr/lib/libpthread.a when searching for -lpthread
/usr/bin/ld: skipping incompatible /usr/lib/libc.so when searching for -lc
/usr/bin/ld: skipping incompatible /usr/lib/libc.a when searching for -lc

lib/matplotlib/delaunay/_delaunay.cpp: In function `PyObject* compute_planes_method(PyObject*, PyObject*)':
lib/matplotlib/delaunay/_delaunay.cpp:315: warning: 'y' might be used uninitialized in this function

cc1plus: warning: command line option "-Wstrict-prototypes" is valid for Ada/C/ObjC but not for C++
src/backend_agg.cpp:3:17: png.h: No such file or directory
error: command 'gcc' failed with exit status 1

The last error seems to be the culprit?.

-shankar
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