[yt-svn] commit/yt-3.0: 117 new changesets
commits-noreply at bitbucket.org
commits-noreply at bitbucket.org
Wed Mar 27 05:58:44 PDT 2013
117 new commits in yt-3.0:
https://bitbucket.org/yt_analysis/yt-3.0/commits/f68f40f99fd0/
Changeset: f68f40f99fd0
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-13 18:50:24
Summary: updated for explicit endianess
Affected #: 1 file
diff -r 707a83d094b676485304aafe2439d39ad9d748d0 -r f68f40f99fd0722ef7a39b4c4f68c08d9e413742 yt/utilities/fortran_utils.py
--- a/yt/utilities/fortran_utils.py
+++ b/yt/utilities/fortran_utils.py
@@ -27,7 +27,7 @@
import numpy as np
import os
-def read_attrs(f, attrs):
+def read_attrs(f, attrs,endian='='):
r"""This function accepts a file pointer and reads from that file pointer
according to a definition of attributes, returning a dictionary.
@@ -44,6 +44,8 @@
attrs : iterable of iterables
This object should be an iterable of the format [ (attr_name, count,
struct type), ... ].
+ endian : str
+ '=' is native, '>' is big, '<' is little endian
Returns
-------
@@ -59,7 +61,7 @@
>>> rv = read_attrs(f, header)
"""
vv = {}
- net_format = "="
+ net_format = endian
for a, n, t in attrs:
net_format += "".join(["I"] + ([t] * n) + ["I"])
size = struct.calcsize(net_format)
@@ -70,16 +72,15 @@
v = [vals.pop(0) for i in range(b)]
s2 = vals.pop(0)
if s1 != s2:
- size = struct.calcsize("=I" + "".join(b*[n]) + "I")
+ size = struct.calcsize(endian "I" + "".join(b*[n]) + "I")
print "S1 = %s ; S2 = %s ; %s %s %s = %s" % (
s1, s2, a, b, n, size)
- raise RuntimeError
assert(s1 == s2)
if b == 1: v = v[0]
vv[a] = v
return vv
-def read_vector(f, d):
+def read_vector(f, d, endian='='):
r"""This function accepts a file pointer and reads from that file pointer
a vector of values.
@@ -89,6 +90,8 @@
An open file object. Should have been opened in mode rb.
d : data type
This is the datatype (from the struct module) that we should read.
+ endian : str
+ '=' is native, '>' is big, '<' is little endian
Returns
-------
@@ -101,9 +104,9 @@
>>> f = open("fort.3", "rb")
>>> rv = read_vector(f, 'd')
"""
- fmt = "=I"
+ fmt = endian+"I"
ss = struct.unpack(fmt, f.read(struct.calcsize(fmt)))[0]
- ds = struct.calcsize("=%s" % d)
+ ds = struct.calcsize(endian+"%s" % d)
if ss % ds != 0:
print "fmt = '%s' ; ss = %s ; ds = %s" % (fmt, ss, ds)
raise RuntimeError
@@ -113,9 +116,10 @@
assert(vec[-1] == ss)
return tr
-def skip(f, n = 1):
+def skip(f, n=1, endian='='):
r"""This function accepts a file pointer and skips a Fortran unformatted
- record.
+ record. Optionally check that the skip was done correctly by checking
+ the pad bytes.
Parameters
----------
@@ -123,6 +127,10 @@
An open file object. Should have been opened in mode rb.
n : int
Number of records to skip.
+ check : bool
+ Assert that the pad bytes are equal
+ endian : str
+ '=' is native, '>' is big, '<' is little endian
Examples
--------
@@ -131,11 +139,13 @@
>>> skip(f, 3)
"""
for i in range(n):
- fmt = "=I"
- ss = struct.unpack(fmt, f.read(struct.calcsize(fmt)))[0]
- f.seek(ss + struct.calcsize("=I"), os.SEEK_CUR)
+ fmt = endian+"I"
+ s1= struct.unpack(fmt, f.read(struct.calcsize(fmt)))[0]
+ f.seek(s1+ struct.calcsize(fmt), os.SEEK_CUR)
+ s2= struct.unpack(fmt, f.read(struct.calcsize(fmt)))[0]
+ assert s1==s2
-def read_record(f, rspec):
+def read_record(f, rspec, endian='='):
r"""This function accepts a file pointer and reads from that file pointer
a single "record" with different components.
@@ -150,6 +160,8 @@
rspec : iterable of iterables
This object should be an iterable of the format [ (attr_name, count,
struct type), ... ].
+ endian : str
+ '=' is native, '>' is big, '<' is little endian
Returns
-------
https://bitbucket.org/yt_analysis/yt-3.0/commits/9e50ea351f33/
Changeset: 9e50ea351f33
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-13 18:56:25
Summary: skip now returns the number of elements skipped
Affected #: 1 file
diff -r f68f40f99fd0722ef7a39b4c4f68c08d9e413742 -r 9e50ea351f3327189b271e7237ad7c83581c4e03 yt/utilities/fortran_utils.py
--- a/yt/utilities/fortran_utils.py
+++ b/yt/utilities/fortran_utils.py
@@ -132,18 +132,25 @@
endian : str
'=' is native, '>' is big, '<' is little endian
+ Returns
+ -------
+ skipped: The number of elements in the skipped array
+
Examples
--------
>>> f = open("fort.3", "rb")
>>> skip(f, 3)
"""
+ skipped = 0
for i in range(n):
fmt = endian+"I"
s1= struct.unpack(fmt, f.read(struct.calcsize(fmt)))[0]
f.seek(s1+ struct.calcsize(fmt), os.SEEK_CUR)
s2= struct.unpack(fmt, f.read(struct.calcsize(fmt)))[0]
assert s1==s2
+ skipped += s1/struct.calcsize(fmt)
+ return skipped
def read_record(f, rspec, endian='='):
r"""This function accepts a file pointer and reads from that file pointer
https://bitbucket.org/yt_analysis/yt-3.0/commits/e2724afc5bf4/
Changeset: e2724afc5bf4
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-13 19:11:59
Summary: added a more concise struct format
Affected #: 1 file
diff -r 9e50ea351f3327189b271e7237ad7c83581c4e03 -r e2724afc5bf4db83014640d89fa58e65f55f801c yt/utilities/fortran_utils.py
--- a/yt/utilities/fortran_utils.py
+++ b/yt/utilities/fortran_utils.py
@@ -42,8 +42,10 @@
f : File object
An open file object. Should have been opened in mode rb.
attrs : iterable of iterables
- This object should be an iterable of the format [ (attr_name, count,
- struct type), ... ].
+ This object should be an iterable of the format
+ [ (attr_name, count, struct type), ... ].
+ or of format
+ [ (attr_name, struct type), ... ].
endian : str
'=' is native, '>' is big, '<' is little endian
@@ -62,21 +64,25 @@
"""
vv = {}
net_format = endian
- for a, n, t in attrs:
+ for attr in attrs:
+ a,t = attr[0],attr[-1]
+ n = 1 if len(attr)==2 else attr[1]
net_format += "".join(["I"] + ([t] * n) + ["I"])
size = struct.calcsize(net_format)
vals = list(struct.unpack(net_format, f.read(size)))
vv = {}
- for a, b, n in attrs:
+ for attr in attrs:
+ a,t = attr[0],attr[-1]
+ n = 1 if len(attr)==2 else attr[1]
s1 = vals.pop(0)
- v = [vals.pop(0) for i in range(b)]
+ v = [vals.pop(0) for i in range(n)]
s2 = vals.pop(0)
if s1 != s2:
- size = struct.calcsize(endian "I" + "".join(b*[n]) + "I")
+ size = struct.calcsize(endian "I" + "".join([t]*n) + "I")
print "S1 = %s ; S2 = %s ; %s %s %s = %s" % (
- s1, s2, a, b, n, size)
+ s1, s2, a, n, t, size)
assert(s1 == s2)
- if b == 1: v = v[0]
+ if n == 1: v = v[0]
vv[a] = v
return vv
https://bitbucket.org/yt_analysis/yt-3.0/commits/9a6dee9b1269/
Changeset: 9a6dee9b1269
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-13 19:15:07
Summary: switched to using fortran utils
Affected #: 1 file
diff -r e2724afc5bf4db83014640d89fa58e65f55f801c -r 9a6dee9b12699a0c9f15393f9f465e8def7f79c2 yt/frontends/art/data_structures.py
--- a/yt/frontends/art/data_structures.py
+++ b/yt/frontends/art/data_structures.py
@@ -53,15 +53,11 @@
import yt.utilities.lib as amr_utils
from .definitions import *
-from .io import _read_frecord
-from .io import _read_record
-from .io import _read_struct
+from yt.utilities.fortran_utils import *
from .io import _read_art_level_info
from .io import _read_child_mask_level
from .io import _read_child_level
from .io import _read_root_level
-from .io import _read_record_size
-from .io import _skip_record
from .io import _count_art_octs
from .io import b2t
@@ -322,10 +318,10 @@
self.parameters.update(constants)
#read the amr header
with open(self.file_amr,'rb') as f:
- amr_header_vals = _read_struct(f,amr_header_struct)
+ amr_header_vals = read_attrs(f,amr_header_struct)
for to_skip in ['tl','dtl','tlold','dtlold','iSO']:
- _skip_record(f)
- (self.ncell,) = struct.unpack('>l', _read_record(f))
+ skip(f)
+ self.ncell = read_vector(f,'l','>')
# Try to figure out the root grid dimensions
est = int(np.rint(self.ncell**(1.0/3.0)))
# Note here: this is the number of *cells* on the root grid.
@@ -337,27 +333,25 @@
self.root_ncells = self.root_nocts*8
mylog.debug("Estimating %i cells on a root grid side,"+ \
"%i root octs",est,self.root_nocts)
- self.root_iOctCh = _read_frecord(f,'>i')[:self.root_ncells]
+ self.root_iOctCh = read_vector(f,'i','>')[:self.root_ncells]
self.root_iOctCh = self.root_iOctCh.reshape(self.domain_dimensions,
order='F')
self.root_grid_offset = f.tell()
- #_skip_record(f) # hvar
- #_skip_record(f) # var
- self.root_nhvar = _read_frecord(f,'>f',size_only=True)
- self.root_nvar = _read_frecord(f,'>f',size_only=True)
+ self.root_nhvar = skip(f)
+ self.root_nvar = skip(f)
#make sure that the number of root variables is a multiple of rootcells
assert self.root_nhvar%self.root_ncells==0
assert self.root_nvar%self.root_ncells==0
self.nhydro_variables = ((self.root_nhvar+self.root_nvar)/
self.root_ncells)
- self.iOctFree, self.nOct = struct.unpack('>ii', _read_record(f))
+ self.iOctFree, self.nOct = read_vector(f,'ii','>')
self.child_grid_offset = f.tell()
self.parameters.update(amr_header_vals)
self.parameters['ncell0'] = self.parameters['ng']**3
#read the particle header
if not self.skip_particles and self.file_particle_header:
with open(self.file_particle_header,"rb") as fh:
- particle_header_vals = _read_struct(fh,particle_header_struct)
+ particle_header_vals = read_attrs(fh,particle_header_struct)
fh.seek(seek_extras)
n = particle_header_vals['Nspecies']
wspecies = np.fromfile(fh,dtype='>f',count=10)
https://bitbucket.org/yt_analysis/yt-3.0/commits/b827e6f8af57/
Changeset: b827e6f8af57
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-13 19:15:18
Summary: wiped old fortran utils
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/96cce19fa09f/
Changeset: 96cce19fa09f
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-13 19:37:17
Summary: reversing changes to read struct
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/a795bea9ad00/
Changeset: a795bea9ad00
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-13 19:51:32
Summary: updated the structs to the standard fortran format
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/56e250e70da6/
Changeset: 56e250e70da6
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-13 20:46:06
Summary: added new formats to read struct
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/55ff846e350d/
Changeset: 55ff846e350d
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-13 20:51:18
Summary: changing the format of the parameter structs
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/fd0a7b20b647/
Changeset: fd0a7b20b647
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-13 21:35:31
Summary: amr now reads in with new fortran modules
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/798f8ac6d81b/
Changeset: 798f8ac6d81b
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-13 21:35:52
Summary: updating to clearer names
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/ff16bb17a32f/
Changeset: ff16bb17a32f
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-13 22:06:01
Summary: updating particle struct format
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/d5d137fc13c0/
Changeset: d5d137fc13c0
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-13 22:09:17
Summary: typo in i -> t
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/75deb32034d4/
Changeset: 75deb32034d4
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-13 22:29:25
Summary: IO refactor complete
Affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/0c06f26e04bd/
Changeset: 0c06f26e04bd
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-13 23:43:27
Summary: root mesh still not working
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/6b507936ae79/
Changeset: 6b507936ae79
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-13 23:45:31
Summary: removed pdb
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/c6318049078b/
Changeset: c6318049078b
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-14 00:38:33
Summary: chunk by level works
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/bb6e0006016d/
Changeset: bb6e0006016d
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-16 20:38:48
Summary: root mesh works. not sure about orientation
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/de3ec92150bc/
Changeset: de3ec92150bc
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-16 21:04:57
Summary: choosing this root mesh orientation; still not sure
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/36ed96388a0f/
Changeset: 36ed96388a0f
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-16 21:06:13
Summary: typo
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/a5d8d694965e/
Changeset: a5d8d694965e
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-17 08:04:41
Summary: first pass at subchunking
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/693811a27b56/
Changeset: 693811a27b56
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-17 08:05:33
Summary: removing bounds checking now that im not debuggin
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/59c31766a6ab/
Changeset: 59c31766a6ab
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-17 08:37:28
Summary: working on subchunking
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/0769bc0d9286/
Changeset: 0769bc0d9286
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-17 19:22:38
Summary: removing changes to oct container
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/a00c2febec62/
Changeset: a00c2febec62
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-17 19:23:25
Summary: segfaulting on oct selection
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/b9ec68615fcb/
Changeset: b9ec68615fcb
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-17 19:25:06
Summary: removed noct_range
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/cb447924d99b/
Changeset: cb447924d99b
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-17 19:28:43
Summary: still segfaulting
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/1036e4343ab6/
Changeset: 1036e4343ab6
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-17 19:35:27
Summary: turning off checks
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/4381be62c1e2/
Changeset: 4381be62c1e2
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-17 19:39:00
Summary: cleaning up IO<->data structures
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/1c528abd1d07/
Changeset: 1c528abd1d07
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-17 19:41:03
Summary: Merge
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/969d1163ac85/
Changeset: 969d1163ac85
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-17 20:17:29
Summary: built the ART octree container, subclasses ramses
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/fba0a8e94d0a/
Changeset: fba0a8e94d0a
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-17 20:17:50
Summary: sub chunking works
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/3a8469a424cc/
Changeset: 3a8469a424cc
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-17 20:25:59
Summary: subchunking fill level does not appear to reduce memory consumption
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/f23b4482202f/
Changeset: f23b4482202f
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-18 00:57:07
Summary: reorder definitions to show diff between stars/dm
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/4882520a423e/
Changeset: 4882520a423e
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-18 01:19:44
Summary: skeletal particle support
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/e3311566ea04/
Changeset: e3311566ea04
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-18 01:46:36
Summary: draft of particle support
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/1016f16f1d30/
Changeset: 1016f16f1d30
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-18 02:11:03
Summary: truncating the number of stars rad
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/b96ae3c8c62d/
Changeset: b96ae3c8c62d
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-18 02:15:43
Summary: working particle IO
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/6821f6e7cb6d/
Changeset: 6821f6e7cb6d
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-18 02:24:02
Summary: removed pdb
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/cca64f300e6d/
Changeset: cca64f300e6d
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-18 21:20:44
Summary: fixed up fields in particle io
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/fdfcf188dfa2/
Changeset: fdfcf188dfa2
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-19 05:28:46
Summary: Adding a bit of documentation to the Cython routines
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/1c32f8c13f01/
Changeset: 1c32f8c13f01
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-19 21:17:19
Summary: fixing bug data structures for multiple fields
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/6d4ceb24b97a/
Changeset: 6d4ceb24b97a
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-19 21:38:59
Summary: fixed subchunking; projections looked good, slices not so much
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/6c8ec5b60714/
Changeset: 6c8ec5b60714
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-19 23:26:08
Summary: sucbhunking wasn't actually working
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/8b6ab02bf49a/
Changeset: 8b6ab02bf49a
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-20 01:38:50
Summary: generalizing is_valid to check the binary amr header
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/b8a8e1b0430c/
Changeset: b8a8e1b0430c
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-20 01:39:00
Summary: without the pdb
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/c6a9d60792bd/
Changeset: c6a9d60792bd
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-20 02:15:33
Summary: limit level works now
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/364318377994/
Changeset: 364318377994
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-20 08:16:04
Summary: starting to make modification to make Trujillo-Gomez simulations work
Affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/219762c84f37/
Changeset: 219762c84f37
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-20 18:38:42
Summary: evaluating the root level when reading in just the header
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/055eb92df654/
Changeset: 055eb92df654
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-20 19:09:31
Summary: Modified left_indices; now seems to work for Trujillo-Gomez datasets
May have had silent problems in Ceverino datasets
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/8f4c3a968e27/
Changeset: 8f4c3a968e27
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-23 00:50:39
Summary: confused np with numpber of particles / numpy
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/e2eb9ebe5004/
Changeset: e2eb9ebe5004
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-23 01:06:19
Summary: more fixes to particle IO
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/9cf0a2d6055f/
Changeset: 9cf0a2d6055f
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-23 01:18:09
Summary: fixes for stellar fields
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/4a5f1ac29984/
Changeset: 4a5f1ac29984
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-23 01:48:10
Summary: added particle mass unit conversion; pf['Time']=1.0
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/72f4462b2b4f/
Changeset: 72f4462b2b4f
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-24 02:40:40
Summary: typo in particle field definition for vel-z
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/86c383824be8/
Changeset: 86c383824be8
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-24 03:08:15
Summary: adding stellar index to pf
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/cd9799c03742/
Changeset: cd9799c03742
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-25 21:05:08
Summary: offset particle positions by 1.0/domain dimension
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/b52a79f8960a/
Changeset: b52a79f8960a
Branch: yt-3.0
User: juxtaposicion
Date: 2013-02-27 00:32:02
Summary: subtle subchunking problems; disabling for now
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/cb0a927a3f3a/
Changeset: cb0a927a3f3a
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-04 22:47:35
Summary: Merge
Affected #: 82 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/c7776fe4712b/
Changeset: c7776fe4712b
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-05 00:35:33
Summary: draft of particle age support
Affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/60cf924b1502/
Changeset: 60cf924b1502
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-05 00:52:36
Summary: asserting ages are similar b/w amr and stars
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/45cc1f5c6196/
Changeset: 45cc1f5c6196
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-05 00:54:16
Summary: typo
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/7f994d27829b/
Changeset: 7f994d27829b
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-05 01:20:32
Summary: adding spread ages field
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/1c8bbce50aa2/
Changeset: 1c8bbce50aa2
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-05 05:56:25
Summary: turning assert into a warning
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/082e90bcdafb/
Changeset: 082e90bcdafb
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-05 21:55:04
Summary: fixing super long debug line
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/208d6a26f1e1/
Changeset: 208d6a26f1e1
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-06 22:20:42
Summary: fixing ires
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/d7ac1f74ed9a/
Changeset: d7ac1f74ed9a
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-07 02:14:28
Summary: can now feed filenames for particle files
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/e68458a6757a/
Changeset: e68458a6757a
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-07 19:22:09
Summary: fixes for particles mass asssignment
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/870b580e5226/
Changeset: 870b580e5226
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-07 19:34:57
Summary: cgs particle masses now work
Affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/0633dbe1826c/
Changeset: 0633dbe1826c
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-07 19:38:17
Summary: removed pdb
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/1fb6bb76a0a2/
Changeset: 1fb6bb76a0a2
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-08 19:54:22
Summary: merged with yt_analysis/yt-3.0
Affected #: 68 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/4bf42d46e46e/
Changeset: 4bf42d46e46e
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-08 19:59:40
Summary: reverting back to periodic region
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/c19a8a845773/
Changeset: c19a8a845773
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-08 20:20:26
Summary: slicing needs the center passed
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/447c295527b4/
Changeset: 447c295527b4
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-08 20:26:29
Summary: adding ParticleMassMsun
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/67cd1a8b8716/
Changeset: 67cd1a8b8716
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-08 22:42:07
Summary: removing print statemnet
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/637666973ae0/
Changeset: 637666973ae0
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-08 22:50:29
Summary: Stupid enumerate(range))
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/690660e722ec/
Changeset: 690660e722ec
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-08 22:58:40
Summary: deleting fields now determines the field first
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/e627ed46b244/
Changeset: e627ed46b244
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-08 23:53:50
Summary: first draft of ART testing
Affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/2488a46a9a4a/
Changeset: 2488a46a9a4a
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-09 00:20:54
Summary: answer testing update
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/e277526d5dbe/
Changeset: e277526d5dbe
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-09 00:41:27
Summary: reverted the field determintaion
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/60932471f489/
Changeset: 60932471f489
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-09 18:29:31
Summary: change in data container key deletion
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/f924ee4cda97/
Changeset: f924ee4cda97
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-09 21:20:06
Summary: now we accept (particle_type,particle_field)
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/eeb18b957e98/
Changeset: eeb18b957e98
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-09 21:27:17
Summary: autopep8 on datastructures
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/b7263dd2e2f9/
Changeset: b7263dd2e2f9
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-09 21:27:33
Summary: autopep8 on io
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/73b9316a3cb2/
Changeset: 73b9316a3cb2
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-09 21:27:45
Summary: autopep8 on fields
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/dd6f2e27bfda/
Changeset: dd6f2e27bfda
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-09 21:28:08
Summary: autopep8 on definitions
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/97e43b3b81b4/
Changeset: 97e43b3b81b4
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-09 21:28:29
Summary: autopep8 on tests
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/889003cc1d9c/
Changeset: 889003cc1d9c
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-09 21:29:58
Summary: wrapping to 80 characters
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/a14ec366cf23/
Changeset: a14ec366cf23
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-09 21:31:46
Summary: added credits
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/43abc3ca352e/
Changeset: 43abc3ca352e
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-09 21:39:02
Summary: fixing units on fields
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/24229c3d19f9/
Changeset: 24229c3d19f9
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-09 22:04:38
Summary: cleaning up fields some more
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/a061c15f2ce1/
Changeset: a061c15f2ce1
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-10 03:51:53
Summary: first pass at find max progenitor, a naive 'halo' finder
Affected #: 4 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/bf9c4f84f002/
Changeset: bf9c4f84f002
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-10 04:11:09
Summary: added center finding for particle density
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/bc38946cada3/
Changeset: bc38946cada3
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-10 04:22:32
Summary: finished testing ParticleDensityCenter
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/4e17843128df/
Changeset: 4e17843128df
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-10 06:12:20
Summary: fmp functional, completes without errors
Affected #: 4 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/5e06580e03f4/
Changeset: 5e06580e03f4
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-11 18:52:34
Summary: rewrote io to get particle field types working, faster particle loading
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/826b3fcdb1cd/
Changeset: 826b3fcdb1cd
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-11 18:53:34
Summary: added option to initialize the center, subselect particle type
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/57852d850e1d/
Changeset: 57852d850e1d
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-11 18:54:30
Summary: fixing typos
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/abfa37edf3cb/
Changeset: abfa37edf3cb
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-11 18:54:46
Summary: cleaner
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/7bbdd187dae0/
Changeset: 7bbdd187dae0
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-11 19:06:32
Summary: found np.in1d, sped things up
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/9145a6b40927/
Changeset: 9145a6b40927
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-11 23:09:17
Summary: fixing domain_width; smallest dx now works
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/fd133f2921db/
Changeset: fd133f2921db
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-11 23:09:32
Summary: adding more verbosity to level loading
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/e3c8b836f606/
Changeset: e3c8b836f606
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-11 23:16:56
Summary: fixed with to 1.0/dimensions
Affected #: 2 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/b837a203a571/
Changeset: b837a203a571
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-19 20:29:36
Summary: Merged yt_analysis/yt-3.0 into yt-3.0
Affected #: 38 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/389b19a43b57/
Changeset: 389b19a43b57
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-19 21:57:58
Summary: making art file matching more generic
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/ece2c9bc6a3a/
Changeset: ece2c9bc6a3a
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-19 21:58:16
Summary: changes to smallest dx
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/f96249c8e477/
Changeset: f96249c8e477
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-19 22:04:01
Summary: fixing case when particles not laoded in
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/95d450c43218/
Changeset: 95d450c43218
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-19 22:05:42
Summary: fixed typo
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/44808dc45298/
Changeset: 44808dc45298
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-19 22:17:06
Summary: changes to _file
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/9c66706d483d/
Changeset: 9c66706d483d
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-19 22:17:54
Summary: fixing _file in io.py
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/8db3dadfe6ff/
Changeset: 8db3dadfe6ff
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-19 22:25:32
Summary: split read_amr into root and by level reads
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/b35a20f2e442/
Changeset: b35a20f2e442
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-19 22:30:04
Summary: split the hydro fill routines into root/ level
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/59f48705d2a8/
Changeset: 59f48705d2a8
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-19 22:31:18
Summary: split the fill routines
Affected #: 1 file
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/ad5e7f75833e/
Changeset: ad5e7f75833e
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-19 22:34:28
Summary: pep8
Affected #: 3 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/88c3c57398b2/
Changeset: 88c3c57398b2
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-19 22:35:05
Summary: Merged yt_analysis/yt-3.0 into yt-3.0
Affected #: 4 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/4f194a75accb/
Changeset: 4f194a75accb
Branch: yt-3.0
User: juxtaposicion
Date: 2013-03-19 22:42:12
Summary: removing FMP stuff
Affected #: 4 files
Diff not available.
https://bitbucket.org/yt_analysis/yt-3.0/commits/1ab51a4c88ac/
Changeset: 1ab51a4c88ac
Branch: yt-3.0
User: MatthewTurk
Date: 2013-03-27 13:58:28
Summary: Merged in juxtaposicion/yt-3.0 (pull request #16)
NMSU ART update
Affected #: 14 files
Diff not available.
Repository URL: https://bitbucket.org/yt_analysis/yt-3.0/
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