[yt-svn] Build failed in Jenkins: py2.7-yt_analysis-3.0 #31
admin at shiningpanda.com
admin at shiningpanda.com
Fri Feb 8 14:29:56 PST 2013
See <https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/31/changes>
Changes:
[Matthew Turk <matthewturk at gmail.com>] Merging into SPH work
[Matthew Turk <matthewturk at gmail.com>] Merging from yt tip, including periodicity.
[Nathan Goldbaum <goldbaum at ucolick.org>] Merged in samskillman/yt (pull request #418)
Restore parallel streamlines, AMRKDTree parallel reduction
[Sam Skillman <samskillman at gmail.com>] Merging
[Sam Skillman <samskillman at gmail.com>] Restoring parallel streamlining capabilities.
[Sam Skillman <samskillman at gmail.com>] A fix to the fix.
[Sam Skillman <samskillman at gmail.com>] Merging
[Sam Skillman <samskillman at gmail.com>] Fixes for off_axis_projection.
[Nathan Goldbaum <goldbaum at ucolick.org>] Merging.
[Nathan Goldbaum <goldbaum at ucolick.org>] Fixing a syntax error in the FLASH frontend.
[Matthew Turk <matthewturk at gmail.com>] Merged in chummels/yt (pull request #417)
Fixes write_projection, adds helper function for unit testing, closes issue #434
[Cameron Hummels _chummels at astro.columbia.edu_] Adding full keyword to expand_keywords, which allows for testing EVERY combination of keywords available.
[Cameron Hummels _chummels at astro.columbia.edu_] Fixing some bugs with the off_axis_projection test. Works now.
[Cameron Hummels _chummels at astro.columbia.edu_] Adding nose test for off_axis_projection and write_projection
[Cameron Hummels _chummels at astro.columbia.edu_] Removing a pdb call.
[Cameron Hummels _chummels at astro.columbia.edu_] Renaming function to not be too verbose.
[Cameron Hummels _chummels at astro.columbia.edu_] Adding expand_keyword_dictionary function, which is helpful for testing many different keyword combinations in nosetests.
[Cameron Hummels _chummels at astro.columbia.edu_] Making kw convention of write_projection match others in file for cmaps.
[Cameron Hummels _chummels at astro.columbia.edu_] Modifying write_projection function to take dpi and figsize keywords. This functionality somehow broke in the switch to the plot_window interface.
[Sam Skillman <samskillman at gmail.com>] Quick fixes to restore jenkins. Parallel streamlines are currently broken.
[Matthew Turk <matthewturk at gmail.com>] Merged in samskillman/yt (pull request #383)
AMRKDTree rewrite, Volume Rendering Upgrades
[Sam Skillman <samskillman at gmail.com>] Fixing up some transfer function/annotated image showing. Also fixing color
values for map_to_colormap (should always be between 0..1).
[Sam Skillman <samskillman at gmail.com>] Adding AMRKDTree unit tests, utilizing load_uniform_grid and refine_amr to generate a fake AMR dataset.
[Sam Skillman <samskillman at gmail.com>] Merging in fixes from another head.
[Sam Skillman <samskillman at gmail.com>] Merging in from tip.
[Sam Skillman <samskillman at gmail.com>] Fixing neighbor finding with AMRKDTree
[Sam Skillman <samskillman at gmail.com>] More fixes to transfer functions, and restoring more functionality to the new
AMRKDTree in terms of calculating total volume/cells. Re-linking TFs to mimic
old behavior.
[Sam Skillman <samskillman at gmail.com>] Getting rid of some usages of prints, and fixing the perspective renders integration
due to a miscalculated offset when using 4 channels.
[Sam Skillman <samskillman at gmail.com>] Bugfixes for more of the cameras. Perspective still not working
[Sam Skillman <sam.skillman at gmail.com>] First pass at combining parallel AMRKDTrees. Not very efficient, but sometimes
necessary for streamlines.
[Sam Skillman <sam.skillman at gmail.com>] A few more fixes
[Sam Skillman <sam.skillman at gmail.com>] First round of edits.
[Sam Skillman <sam.skillman at gmail.com>] Fixing broken API for storing, loading kd bricks. Also fixes for the annotation of the images
[Sam Skillman <sam.skillman at gmail.com>] Bugfixes, restore streamline functionality
[Sam Skillman <sam.skillman at gmail.com>] Merging from main into kd refactor/mpi-opaque work. Includes a no-op merge of
the amr_kdtree.py since it has been re-written.
[Sam Skillman <sam.skillman at gmail.com>] Removed tag mpi-opaque
[Sam Skillman <sam.skillman at gmail.com>] Make the comm size and rank keywords.
[Sam Skillman <sam.skillman at gmail.com>] Adding a find_node function, which given a starting node and position, will find the brick containing that position.
[Sam Skillman <sam.skillman at gmail.com>] cleaning up trailing whitespace
[Sam Skillman <sam.skillman at gmail.com>] na -> np
[Sam Skillman <sam.skillman at gmail.com>] Bugfix. Without this, once down to one grid, it would return even if it didn't completely cover the node.
[Sam Skillman <sam.skillman at gmail.com>] Working on parallel image reduction.
[Sam Skillman <sam.skillman at gmail.com>] Subdomains now work correctly. I think the check to make sure a valid split was found can now be removed.'
[Sam Skillman <sam.skillman at gmail.com>] Merging in kd refactor work into mpi-opaque.
[Sam Skillman <sam.skillman at gmail.com>] If kdtree_get_choices fails, the node is invalid.
[Sam Skillman <sam.skillman at gmail.com>] Removing print statements
[Sam Skillman <sam.skillman at gmail.com>] Implment geometrical splitting of grids based on longest axis. May be fragile to non-cubical cells.
[Sam Skillman <sam.skillman at gmail.com>] Adding back in scale multiplier in map_to_colormap
[Sam Skillman <sam.skillman at gmail.com>] Need to return the image. Later should revisit memory usage/duplication.
[Sam Skillman <sam.skillman at gmail.com>] Merging new kd work in with alpha channel work. This compiles/runs but images arent generated correctly yet due to the way alpha is handled in the imshow/write_bitmap call.
[Sam Skillman <sam.skillman at gmail.com>] Implementing parallel build and image reduction. Still seeing some issues with non-power of 2 in terms of some regions showing up lighter/darker. This will probably get solved with the alpha channel coming back.
[Sam Skillman <sam.skillman at gmail.com>] Merging from main.
[Sam Skillman <sam.skillman at gmail.com>] Fixing some long lines.
[Sam Skillman <sam.skillman at gmail.com>] Parallel build seems to be partitioning correctly. Now just need to write the reduction techniques and modify the traversals to deal with nodes that neither have children nor own a grid.
[Sam Skillman <sam.skillman at gmail.com>] Before moving to a while loop instead of recursive calls.
[Sam Skillman <sam.skillman at gmail.com>] MosaicCamera uses dynamic parallel objects
[Sam Skillman <sam.skillman at gmail.com>] Merging
[Sam Skillman <sam.skillman at gmail.com>] remove an argument
[Sam Skillman <sam.skillman at gmail.com>] Merging yt into my rendering development head
[Sam Skillman <sam.skillman at gmail.com>] Merging
[Sam Skillman <sam.skillman at gmail.com>] Fixing some mpl calls in the interactive camera.
[Sam Skillman <sam.skillman at gmail.com>] Intermediate work on the mosaic camera
[Sam Skillman <sam.skillman at gmail.com>] re-implementing the MosaicCamera
[Sam Skillman <sam.skillman at gmail.com>] Adding a 4th (alpha) channel to the rgba that is used in volume renderings. This allows for more flexibility in integrating the various fields along the ray. In particular, it allows for MPI-parallel (to go along with the OpenMP) opaque renders. Also restoring the proper movement when steady_north is used, which may have gotten mixed up in a prior merge. Currently I've only tested the ColorTransferFunction, and I suspect other cameras/TFs will need to be updated now that rgba[4] is assumed in some places.
[Sam Skillman <sam.skillman at gmail.com>] Updating hgignore to yt/utilities/lib from /_amr_utils
[Sam Skillman <sam.skillman at gmail.com>] Make the image an arg rather than kwarg
[Sam Skillman <sam.skillman at gmail.com>] Working on annotated volume renders, and the ability to show them interactively when using ipython with a compatible matplotlib backend. This needs cleaning up.
[Sam Skillman <sam.skillman at gmail.com>] Fixing a bug in the interactive camera. Also changing the way transfer functions are displayed with the interactive camera. If people like this, we should change this for the normal TF.plot() as well.
[Sam Skillman <sam.skillman at gmail.com>] Adding min_ and max_level kwargs for AMRKDTree. This removes some of the defensive programming checks in AMRKDTree.traverse, but I think this is okay, and similar to what we have set up in the old implementation. This significantly speeds up tree build and rendering for nested sims.
[Sam Skillman <sam.skillman at gmail.com>] Moving bare functions from amr_kdtree.py to amr_kdtools.py
[Sam Skillman <sam.skillman at gmail.com>] Cleaning
[Sam Skillman <sam.skillman at gmail.com>] Rewrite of the AMRKDTree, which simplifies the construction, and will allow for arbitrary grid collections in the future. Still is not at feature parity of the old AMRKDTree, but this is a good starting point.
[Nathan Goldbaum <goldbaum at ucolick.org>] Merged in xarthisius/yt (pull request #414)
Ensure that lapack is built with -fPIC. Fixes #495
[Kacper Kowalik _xarthisius.kk at gmail.com_] Ensure that lapack is built with -fPIC. Fixes #495
[Cameron Hummels _chummels at astro.columbia.edu_] Fixing a bug with bash syntax in the installer. Without this fix, installer would complain to user (and potentially not install scipy when commanded).
[Devin Silvia <devin.silvia at gmail.com>] the will/won't check for the install script for SCIPY was incorrectly using
the PYX value.
[Nathan Goldbaum <goldbaum at ucolick.org>] Improving the language in the install script.
[Nathan Goldbaum <goldbaum at ucolick.org>] Adding some scipy notes and warning about being up to date on OSX point releases.
[Nathan Goldbaum <goldbaum at ucolick.org>] Updating the OS X notes on the install script.
[Nathan Goldbaum <goldbaum at ucolick.org>] Merging
[Nathan Goldbaum <goldbaum at ucolick.org>] Removing ranger from the install script. RIP.
[Kacper Kowalik _xarthisius.kk at gmail.com_] Add `NullHandler` to `ytLogger` when stream logging is suppresed. Fixes #492
[Matthew Turk <matthewturk at gmail.com>] Quick fix for Enzo data_structures.py syntax error
[Matthew Turk <matthewturk at gmail.com>] Merged in ngoldbaum/yt (pull request #410)
First pass at YTEP-6. Closes #484.
[Nathan Goldbaum <goldbaum at ucolick.org>] Merging.
[Nathan Goldbaum <goldbaum at ucolick.org>] Merging to tip.
[Nathan Goldbaum <goldbaum at ucolick.org>] Setting periodicity in the orion frontend.
Minor stylistic modifications to the nyx and enzo frontends.
[Nathan Goldbaum <goldbaum at ucolick.org>] Merged yt_analysis/yt into yt
[Nathan Goldbaum <goldbaum at ucolick.org>] Need to use ensure_list otherwise 1D sims will barf.
[Nathan Goldbaum <goldbaum at ucolick.org>] Updating following Matt's comments.
[Nathan Goldbaum <goldbaum at ucolick.org>] fake_parameter_file needs a periodicity attribute.
[Nathan Goldbaum <goldbaum at ucolick.org>] Fixing another typo.
[Nathan Goldbaum <goldbaum at ucolick.org>] Correcting a couple of typos.
[Nathan Goldbaum <goldbaum at ucolick.org>] Adding a periodicity attribute for the gdf frontend.
[Nathan Goldbaum <goldbaum at ucolick.org>] Adding tests for the new periodicity functionality.
[Nathan Goldbaum <goldbaum at ucolick.org>] Fixing some remaining jankiness in periodic_dist
[Nathan Goldbaum <goldbaum at ucolick.org>] Fixing some issues that caused periodic_dist and Radius to break in some situations.
[Nathan Goldbaum <goldbaum at ucolick.org>] Forgot to import periodic_dist and euclidean_dist.
[Nathan Goldbaum <goldbaum at ucolick.org>] Removing ValidatePeriodic and IsNotPeriodic, they are not needed.
[Nathan Goldbaum <goldbaum at ucolick.org>] Rethinking the way we handle periodic fields. No more validators and juggling
the _function attribute. It works but it's complicated and doesn't make things
very clear. Worse, to handle the corner case where a simulation is periodic
along only one or two directions, we have to either define six new fields
that handle each possible case or insert the logic into the periodic radius
field anyway, obviating the need for the validator and field metaprogramming.
This puts the logic inside the field definition. I've also refactored the fields
so I think the semantic cost isn't very high.
[Nathan Goldbaum <goldbaum at ucolick.org>] Merged yt_analysis/yt into yt
[Nathan Goldbaum <goldbaum at ucolick.org>] Adding a new non periodic radius field.
This reassigns the _function of a DerivedField object, allowing
the Radius field to use _RadiusIsolated instead of _Radius.
[Nathan Goldbaum <goldbaum at ucolick.org>] Adding ValidatePeriodic.
[Nathan Goldbaum <goldbaum at ucolick.org>] Adding a periodicity attribute for the frontends I can figure it out for.
[Nathan Goldbaum <goldbaum at ucolick.org>] Adding ensure_tuple to funcs. I think we've got all the interables now ;)
[Matthew Turk <matthewturk at gmail.com>] Adding a gray option to write_png_to_string.
[Kacper Kowalik _xarthisius.kk at gmail.com_] [test_plotwindow:assert_fname] Add links explaining hardcoded magic numbers
[Kacper Kowalik _xarthisius.kk at gmail.com_] Get rid of libmagic dependency for plotwindow tests. Yield tests
[Matthew Turk <matthewturk at gmail.com>] Kacper noticed a few typos. Fixed!
[Matthew Turk <matthewturk at gmail.com>] Merged in ngoldbaum/yt (pull request #409)
Adding scipy to the install script.
[Nathan Goldbaum <goldbaum at ucolick.org>] Adding scipy to the install script. Closes #465.
[Nathan Goldbaum <goldbaum at ucolick.org>] Merged in samskillman/yt (pull request #406)
Draw domain boundary, and first pass at drawing grids in rendering.
[Sam Skillman <samskillman at gmail.com>] Changing default alpha to 0.3 for all line/grid annotations.
[Sam Skillman <samskillman at gmail.com>] Adding docstrings to line/box/grids/domain drawing.
[Sam Skillman <samskillman at gmail.com>] Addressing code comments.
[Sam Skillman <samskillman at gmail.com>] Fixing an import
[Sam Skillman <samskillman at gmail.com>] Merging plus fixing some new imports
[Sam Skillman <sam.skillman at gmail.com>] Adding the blenders file. This may be short lived
[Sam Skillman <sam.skillman at gmail.com>] Start of an attempt at drawing grid boundaries
[Sam Skillman <sam.skillman at gmail.com>] Transposing image so that the camera north vector works as expected. This is caused by the standard of having an image (0,0) being in the upper right
[Sam Skillman <sam.skillman at gmail.com>] Intermediate work on the adding grids to renders.
[Matthew Turk <matthewturk at gmail.com>] Add a property to AMRSurface to get back Triangles
[Britton Smith <brittonsmith at gmail.com>] Changing to use DEST_DIR instead of YT_DEST in install script for
writing out the time that dependencies were updated. If the install
script is being run for the first time, YT_DEST is not set and so this
doesn't work.
[Matthew Turk <matthewturk at gmail.com>] Merged in MatthewTurk/yt (pull request #407)
Adding ability to get particle fields from smoothed and unsmoothed covering grids.
[Matthew Turk <matthewturk at gmail.com>] Adding ability to get particle fields from smoothed and unsmoothed covering grids.
[Matthew Turk <matthewturk at gmail.com>] Adding citation information for Rockstar. Closes #396.
[Matthew Turk <matthewturk at gmail.com>] Merged in brittonsmith/yt (pull request #391)
Adding yt update --all to update entired yt stack.
[Britton Smith <brittonsmith at gmail.com>] Fixing a tab so that instinfo doesn't print "updated successfully" if
update not done. I think I messed that up.
[Britton Smith <brittonsmith at gmail.com>] Moved setting of DEST_DIR to YT_DEST in install script to maintain
script readability.
[Britton Smith <brittonsmith at gmail.com>] Removing note about wxpython from install script.
[Britton Smith <brittonsmith at gmail.com>] Install script now writes the date to a .yt_update file so yt can tell
when it was last run.
[Britton Smith <brittonsmith at gmail.com>] Added function to get the date of the last run of the install script.
[Britton Smith <brittonsmith at gmail.com>] Added --all option to yt update to run install script after updating
the yt repo.
[Britton Smith <brittonsmith at gmail.com>] Added option to install script to install to currently set YT_DEST.
This is done by setting REINST_YT to 1.
[Andrew Myers <atmyers at berkeley.edu>] the IsBound derived quantity assumed that the domain_width was 1 in several places
[Sam Skillman <samskillman at gmail.com>] Merging
[Sam Skillman <samskillman at gmail.com>] Adding periodic_position to math_utils.py
[Stephen Skory _s at skory.us_] Merged in Astrodude87/yt_fixellipseparticlemass (pull request #402)
Fixed Elliptical container and halo load
[Mark Richardson <Mark.L.Richardson at asu.edu>] Fixed Elliptical container and halo load
[J.S. Oishi _jsoishi at gmail.com_] added reminder on -L syntax.
[Kacper Kowalik _xarthisius.kk at gmail.com_] [funcs:get_image_suffix] now returns extention prefixed by dot. Fixes #487
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yt : [DEBUG ] 2013-02-08 23:29:43,237 Initializing data grid data IO
yt : [DEBUG ] 2013-02-08 23:29:43,237 Detecting fields.
yt : [DEBUG ] 2013-02-08 23:29:43,238 Adding unknown detected fields
yt : [DEBUG ] 2013-02-08 23:29:43,239 Checking ['Density']
yt : [INFO ] 2013-02-08 23:29:43,259 Adding unknown field Density to list of fields
yt : [DEBUG ] 2013-02-08 23:29:43,260 Setting up derived fields
yt : [DEBUG ] 2013-02-08 23:29:43,555 Generating vorticity on defaultdict(<function <lambda> at 0x126872a8>, {'dz': array([ 1.]), 'dx': array([ 1.]), 'dy': array([ 1.])})
yt : [INFO ] 2013-02-08 23:29:44,033 Refining another level. Current max level: 1
yt : [DEBUG ] 2013-02-08 23:29:44,041 Reading 32768 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:44,063 Reading 54720 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:44,120 Appending object to AMRGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt : [DEBUG ] 2013-02-08 23:29:44,123 Appending object to AMRGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt : [DEBUG ] 2013-02-08 23:29:44,127 Reading 6840 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:44,132 Appending object to AMRGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt : [DEBUG ] 2013-02-08 23:29:44,137 Reading 45288 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:44,152 Appending object to AMRGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt : [INFO ] 2013-02-08 23:29:44,181 Parameters: current_time = 0.0
yt : [INFO ] 2013-02-08 23:29:44,181 Parameters: domain_dimensions = [32 32 32]
yt : [INFO ] 2013-02-08 23:29:44,182 Parameters: domain_left_edge = [ 0. 0. 0.]
yt : [INFO ] 2013-02-08 23:29:44,183 Parameters: domain_right_edge = [ 1. 1. 1.]
yt : [INFO ] 2013-02-08 23:29:44,183 Parameters: cosmological_simulation = 0.0
yt : [INFO ] 2013-02-08 23:29:44,184 Parameters: current_time = 0.0
yt : [INFO ] 2013-02-08 23:29:44,185 Parameters: domain_dimensions = [32 32 32]
yt : [INFO ] 2013-02-08 23:29:44,187 Parameters: domain_left_edge = [ 0. 0. 0.]
yt : [INFO ] 2013-02-08 23:29:44,188 Parameters: domain_right_edge = [ 1. 1. 1.]
yt : [INFO ] 2013-02-08 23:29:44,189 Parameters: cosmological_simulation = 0.0
yt : [DEBUG ] 2013-02-08 23:29:44,189 Initializing data storage.
yt : [DEBUG ] 2013-02-08 23:29:44,191 Setting up classes.
yt : [DEBUG ] 2013-02-08 23:29:44,520 Setting up domain geometry.
yt : [DEBUG ] 2013-02-08 23:29:44,520 Counting grids.
yt : [DEBUG ] 2013-02-08 23:29:44,520 Initializing grid arrays.
yt : [DEBUG ] 2013-02-08 23:29:44,521 Allocating arrays for 3 grids
yt : [DEBUG ] 2013-02-08 23:29:44,521 Parsing hierarchy.
yt : [DEBUG ] 2013-02-08 23:29:44,521 Copying reverse tree
yt : [DEBUG ] 2013-02-08 23:29:44,534 Reconstructing parent-child relationships
yt : [DEBUG ] 2013-02-08 23:29:44,535 First pass; identifying child grids
yt : [DEBUG ] 2013-02-08 23:29:44,535 Second pass; identifying parents
yt : [DEBUG ] 2013-02-08 23:29:44,535 Preparing grids
yt : [DEBUG ] 2013-02-08 23:29:44,536 Prepared 0 / 3 grids
yt : [DEBUG ] 2013-02-08 23:29:44,537 Prepared
yt : [DEBUG ] 2013-02-08 23:29:44,537 Constructing grid objects.
yt : [DEBUG ] 2013-02-08 23:29:44,538 Re-examining hierarchy
yt : [DEBUG ] 2013-02-08 23:29:44,540 Initializing data grid data IO
yt : [DEBUG ] 2013-02-08 23:29:44,540 Detecting fields.
yt : [DEBUG ] 2013-02-08 23:29:44,541 Adding unknown detected fields
yt : [DEBUG ] 2013-02-08 23:29:44,541 Checking ['Density']
yt : [INFO ] 2013-02-08 23:29:44,541 Adding unknown field Density to list of fields
yt : [DEBUG ] 2013-02-08 23:29:44,542 Setting up derived fields
yt : [DEBUG ] 2013-02-08 23:29:44,852 Generating vorticity on defaultdict(<function <lambda> at 0x6d0a8c0>, {'dz': array([ 1.]), 'dx': array([ 1.]), 'dy': array([ 1.])})
yt : [INFO ] 2013-02-08 23:29:45,318 Refining another level. Current max level: 2
yt : [DEBUG ] 2013-02-08 23:29:45,326 Reading 32768 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:45,348 Reading 54720 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:45,479 Reading 314160 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:45,759 Appending object to AMRGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt : [DEBUG ] 2013-02-08 23:29:45,763 Appending object to AMRGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt : [DEBUG ] 2013-02-08 23:29:45,767 Reading 4352 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:45,771 Appending object to AMRGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt : [DEBUG ] 2013-02-08 23:29:45,777 Reading 27000 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:45,787 Appending object to AMRGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt : [DEBUG ] 2013-02-08 23:29:45,821 Reading 188442 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:45,892 Appending object to AMRGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt : [INFO ] 2013-02-08 23:29:45,961 Parameters: current_time = 0.0
yt : [INFO ] 2013-02-08 23:29:45,962 Parameters: domain_dimensions = [32 32 32]
yt : [INFO ] 2013-02-08 23:29:45,963 Parameters: domain_left_edge = [ 0. 0. 0.]
yt : [INFO ] 2013-02-08 23:29:45,963 Parameters: domain_right_edge = [ 1. 1. 1.]
yt : [INFO ] 2013-02-08 23:29:45,964 Parameters: cosmological_simulation = 0.0
yt : [INFO ] 2013-02-08 23:29:45,965 Parameters: current_time = 0.0
yt : [INFO ] 2013-02-08 23:29:45,965 Parameters: domain_dimensions = [32 32 32]
yt : [INFO ] 2013-02-08 23:29:45,966 Parameters: domain_left_edge = [ 0. 0. 0.]
yt : [INFO ] 2013-02-08 23:29:45,967 Parameters: domain_right_edge = [ 1. 1. 1.]
yt : [INFO ] 2013-02-08 23:29:45,968 Parameters: cosmological_simulation = 0.0
yt : [DEBUG ] 2013-02-08 23:29:45,968 Initializing data storage.
yt : [DEBUG ] 2013-02-08 23:29:45,970 Setting up classes.
yt : [DEBUG ] 2013-02-08 23:29:46,303 Setting up domain geometry.
yt : [DEBUG ] 2013-02-08 23:29:46,303 Counting grids.
yt : [DEBUG ] 2013-02-08 23:29:46,304 Initializing grid arrays.
yt : [DEBUG ] 2013-02-08 23:29:46,304 Allocating arrays for 4 grids
yt : [DEBUG ] 2013-02-08 23:29:46,305 Parsing hierarchy.
yt : [DEBUG ] 2013-02-08 23:29:46,305 Copying reverse tree
yt : [DEBUG ] 2013-02-08 23:29:46,306 Reconstructing parent-child relationships
yt : [DEBUG ] 2013-02-08 23:29:46,306 First pass; identifying child grids
yt : [DEBUG ] 2013-02-08 23:29:46,307 Second pass; identifying parents
yt : [DEBUG ] 2013-02-08 23:29:46,307 Preparing grids
yt : [DEBUG ] 2013-02-08 23:29:46,308 Prepared 0 / 4 grids
yt : [DEBUG ] 2013-02-08 23:29:46,309 Prepared
yt : [DEBUG ] 2013-02-08 23:29:46,309 Constructing grid objects.
yt : [DEBUG ] 2013-02-08 23:29:46,310 Re-examining hierarchy
yt : [DEBUG ] 2013-02-08 23:29:46,311 Initializing data grid data IO
yt : [DEBUG ] 2013-02-08 23:29:46,312 Detecting fields.
yt : [DEBUG ] 2013-02-08 23:29:46,312 Adding unknown detected fields
yt : [DEBUG ] 2013-02-08 23:29:46,313 Checking ['Density']
yt : [INFO ] 2013-02-08 23:29:46,313 Adding unknown field Density to list of fields
yt : [DEBUG ] 2013-02-08 23:29:46,314 Setting up derived fields
yt : [DEBUG ] 2013-02-08 23:29:46,638 Generating vorticity on defaultdict(<function <lambda> at 0x453dd70>, {'dz': array([ 1.]), 'dx': array([ 1.]), 'dy': array([ 1.])})
yt : [INFO ] 2013-02-08 23:29:47,115 Refining another level. Current max level: 3
yt : [DEBUG ] 2013-02-08 23:29:47,123 Reading 32768 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:47,144 Reading 54720 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:47,280 Reading 314160 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:48,071 Reading 1355200 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:49,198 Appending object to AMRGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt : [DEBUG ] 2013-02-08 23:29:49,201 Appending object to AMRGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt : [DEBUG ] 2013-02-08 23:29:49,218 Reading 1210 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:49,221 Appending object to AMRGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt : [DEBUG ] 2013-02-08 23:29:49,225 Reading 6156 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:49,229 Appending object to AMRGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt : [DEBUG ] 2013-02-08 23:29:49,241 Reading 38148 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:49,258 Appending object to AMRGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt : [DEBUG ] 2013-02-08 23:29:49,319 Reading 266240 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:49,464 Appending object to AMRGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt : [INFO ] 2013-02-08 23:29:49,568 Parameters: current_time = 0.0
yt : [INFO ] 2013-02-08 23:29:49,568 Parameters: domain_dimensions = [32 32 32]
yt : [INFO ] 2013-02-08 23:29:49,569 Parameters: domain_left_edge = [ 0. 0. 0.]
yt : [INFO ] 2013-02-08 23:29:49,570 Parameters: domain_right_edge = [ 1. 1. 1.]
yt : [INFO ] 2013-02-08 23:29:49,571 Parameters: cosmological_simulation = 0.0
yt : [INFO ] 2013-02-08 23:29:49,571 Parameters: current_time = 0.0
yt : [INFO ] 2013-02-08 23:29:49,572 Parameters: domain_dimensions = [32 32 32]
yt : [INFO ] 2013-02-08 23:29:49,573 Parameters: domain_left_edge = [ 0. 0. 0.]
yt : [INFO ] 2013-02-08 23:29:49,574 Parameters: domain_right_edge = [ 1. 1. 1.]
yt : [INFO ] 2013-02-08 23:29:49,575 Parameters: cosmological_simulation = 0.0
yt : [DEBUG ] 2013-02-08 23:29:49,576 Initializing data storage.
yt : [DEBUG ] 2013-02-08 23:29:49,578 Setting up classes.
yt : [DEBUG ] 2013-02-08 23:29:49,909 Setting up domain geometry.
yt : [DEBUG ] 2013-02-08 23:29:49,910 Counting grids.
yt : [DEBUG ] 2013-02-08 23:29:49,910 Initializing grid arrays.
yt : [DEBUG ] 2013-02-08 23:29:49,911 Allocating arrays for 5 grids
yt : [DEBUG ] 2013-02-08 23:29:49,911 Parsing hierarchy.
yt : [DEBUG ] 2013-02-08 23:29:49,912 Copying reverse tree
yt : [DEBUG ] 2013-02-08 23:29:49,913 Reconstructing parent-child relationships
yt : [DEBUG ] 2013-02-08 23:29:49,913 First pass; identifying child grids
yt : [DEBUG ] 2013-02-08 23:29:49,914 Second pass; identifying parents
yt : [DEBUG ] 2013-02-08 23:29:49,915 Preparing grids
yt : [DEBUG ] 2013-02-08 23:29:49,915 Prepared 0 / 5 grids
yt : [DEBUG ] 2013-02-08 23:29:49,916 Prepared
yt : [DEBUG ] 2013-02-08 23:29:49,916 Constructing grid objects.
yt : [DEBUG ] 2013-02-08 23:29:49,916 Re-examining hierarchy
yt : [DEBUG ] 2013-02-08 23:29:49,919 Initializing data grid data IO
yt : [DEBUG ] 2013-02-08 23:29:49,919 Detecting fields.
yt : [DEBUG ] 2013-02-08 23:29:49,919 Adding unknown detected fields
yt : [DEBUG ] 2013-02-08 23:29:49,920 Checking ['Density']
yt : [INFO ] 2013-02-08 23:29:49,921 Adding unknown field Density to list of fields
yt : [DEBUG ] 2013-02-08 23:29:49,921 Setting up derived fields
yt : [DEBUG ] 2013-02-08 23:29:50,223 Generating vorticity on defaultdict(<function <lambda> at 0x50dacf8>, {'dz': array([ 1.]), 'dx': array([ 1.]), 'dy': array([ 1.])})
yt : [INFO ] 2013-02-08 23:29:50,700 Refining another level. Current max level: 4
yt : [DEBUG ] 2013-02-08 23:29:50,708 Reading 32768 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:50,730 Reading 54720 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:50,858 Reading 314160 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:51,576 Reading 1355200 cells of ['Density'] fields in 1 blocks
yt : [DEBUG ] 2013-02-08 23:29:53,140 Reading 1937376 cells of ['Density'] fields in 1 blocks
yt : [INFO ] 2013-02-08 23:29:54,640 Parameters: current_time = 0.0
yt : [INFO ] 2013-02-08 23:29:54,640 Parameters: domain_dimensions = [32 32 32]
yt : [INFO ] 2013-02-08 23:29:54,641 Parameters: domain_left_edge = [ 0. 0. 0.]
yt : [INFO ] 2013-02-08 23:29:54,642 Parameters: domain_right_edge = [ 1. 1. 1.]
yt : [INFO ] 2013-02-08 23:29:54,643 Parameters: cosmological_simulation = 0.0
yt : [INFO ] 2013-02-08 23:29:54,643 Parameters: current_time = 0.0
yt : [INFO ] 2013-02-08 23:29:54,644 Parameters: domain_dimensions = [32 32 32]
yt : [INFO ] 2013-02-08 23:29:54,645 Parameters: domain_left_edge = [ 0. 0. 0.]
yt : [INFO ] 2013-02-08 23:29:54,645 Parameters: domain_right_edge = [ 1. 1. 1.]
yt : [INFO ] 2013-02-08 23:29:54,647 Parameters: cosmological_simulation = 0.0
yt : [DEBUG ] 2013-02-08 23:29:54,647 Initializing data storage.
yt : [DEBUG ] 2013-02-08 23:29:54,648 Setting up classes.
yt : [DEBUG ] 2013-02-08 23:29:54,985 Setting up domain geometry.
yt : [DEBUG ] 2013-02-08 23:29:54,985 Counting grids.
yt : [DEBUG ] 2013-02-08 23:29:54,986 Initializing grid arrays.
yt : [DEBUG ] 2013-02-08 23:29:54,986 Allocating arrays for 5 grids
yt : [DEBUG ] 2013-02-08 23:29:54,987 Parsing hierarchy.
yt : [DEBUG ] 2013-02-08 23:29:54,987 Copying reverse tree
yt : [DEBUG ] 2013-02-08 23:29:54,988 Reconstructing parent-child relationships
yt : [DEBUG ] 2013-02-08 23:29:54,988 First pass; identifying child grids
yt : [DEBUG ] 2013-02-08 23:29:54,988 Second pass; identifying parents
yt : [DEBUG ] 2013-02-08 23:29:55,002 Preparing grids
yt : [DEBUG ] 2013-02-08 23:29:55,002 Prepared 0 / 5 grids
yt : [DEBUG ] 2013-02-08 23:29:55,003 Prepared
yt : [DEBUG ] 2013-02-08 23:29:55,003 Constructing grid objects.
yt : [DEBUG ] 2013-02-08 23:29:55,004 Re-examining hierarchy
yt : [DEBUG ] 2013-02-08 23:29:55,006 Initializing data grid data IO
yt : [DEBUG ] 2013-02-08 23:29:55,006 Detecting fields.
yt : [DEBUG ] 2013-02-08 23:29:55,007 Adding unknown detected fields
yt : [DEBUG ] 2013-02-08 23:29:55,007 Checking ['Density']
yt : [INFO ] 2013-02-08 23:29:55,008 Adding unknown field Density to list of fields
yt : [DEBUG ] 2013-02-08 23:29:55,008 Setting up derived fields
yt : [DEBUG ] 2013-02-08 23:29:55,303 Generating vorticity on defaultdict(<function <lambda> at 0x6895e60>, {'dz': array([ 1.]), 'dx': array([ 1.]), 'dy': array([ 1.])})
yt : [DEBUG ] 2013-02-08 23:29:55,782 Building AMRKDTree
yt : [DEBUG ] 2013-02-08 23:29:55,783 Appending object to AMRGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
Traceback (most recent call last):
File "setup.py", line 211, in <module>
File "setup.py", line 206, in setup_package
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/numpy/distutils/core.py", line 186, in setup
return old_setup(**new_attr)
File "/home/slave/yt-x86_64/lib/python2.7/distutils/core.py", line 152, in setup
dist.run_commands()
File "/home/slave/yt-x86_64/lib/python2.7/distutils/dist.py", line 953, in run_commands
self.run_command(cmd)
File "/home/slave/yt-x86_64/lib/python2.7/distutils/dist.py", line 972, in run_command
cmd_obj.run()
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/commands.py", line 154, in run
TestProgram(argv=argv, config=self.__config)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/core.py", line 118, in __init__
**extra_args)
File "/home/slave/yt-x86_64/lib/python2.7/unittest/main.py", line 95, in __init__
self.runTests()
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/core.py", line 197, in runTests
result = self.testRunner.run(self.test)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/core.py", line 61, in run
test(result)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/suite.py", line 176, in __call__
return self.run(*arg, **kw)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/suite.py", line 223, in run
test(orig)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/suite.py", line 176, in __call__
return self.run(*arg, **kw)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/suite.py", line 223, in run
test(orig)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/suite.py", line 176, in __call__
return self.run(*arg, **kw)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/suite.py", line 223, in run
test(orig)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/suite.py", line 176, in __call__
return self.run(*arg, **kw)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/suite.py", line 223, in run
test(orig)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/suite.py", line 176, in __call__
return self.run(*arg, **kw)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/suite.py", line 223, in run
test(orig)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/case.py", line 45, in __call__
return self.run(*arg, **kwarg)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/case.py", line 138, in run
result.addError(self, err)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/proxy.py", line 131, in addError
formatted = plugins.formatError(self.test, err)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/plugins/manager.py", line 99, in __call__
return self.call(*arg, **kw)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/plugins/manager.py", line 141, in chain
result = meth(*arg, **kw)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/plugins/logcapture.py", line 229, in formatError
test.capturedLogging = records = self.formatLogRecords()
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/plugins/logcapture.py", line 237, in formatLogRecords
return [safe_str(format(r)) for r in self.handler.buffer]
File "/home/slave/yt-x86_64/lib/python2.7/logging/__init__.py", line 723, in format
return fmt.format(record)
File "/home/slave/yt-x86_64/lib/python2.7/logging/__init__.py", line 464, in format
record.message = record.getMessage()
File "/home/slave/yt-x86_64/lib/python2.7/logging/__init__.py", line 328, in getMessage
msg = msg % self.args
ReferenceError: weakly-referenced object no longer exists
Build step 'Custom Python Builder' marked build as failure
Recording test results
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