[yt-svn] Build failed in Jenkins: py2.7-yt_analysis-3.0 #30
admin at shiningpanda.com
admin at shiningpanda.com
Fri Feb 8 14:13:52 PST 2013
See <https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/30/changes>
Changes:
[Matthew Turk <matthewturk at gmail.com>] Merging (no-op)
[Matthew Turk <matthewturk at gmail.com>] Considerable speedup for OWLS data by removing implicit H5S creation.
[Matthew Turk <matthewturk at gmail.com>] Considerable speedup in OWLS IO. Slight Smoothing Kernel speedup.
By reading the data from disk *before* getting the mask, we can perform the
subselection in memory, rather than creating the HDF5 H5S objects.
Additionally, we can do all three vector field components at once inside Cython
for even further speedup.
[Matthew Turk <matthewturk at gmail.com>] Speed up the kernel computation considerably by storing distance.
This also includes a different calculation of the half_len, but commented out.
I need to think carefully what the correct half_len is.
[Matthew Turk <matthewturk at gmail.com>] This fixes a missing factor of dds[i] in calculating smoothing kernel radius.
[Matthew Turk <matthewturk at gmail.com>] Initial import of a smoothing_kernel routine.
------------------------------------------
[...truncated 35985 lines...]
yt: INFO: xlim = 0.000000 1.000000
yt: INFO: ylim = 0.000000 1.000000
yt: INFO: Making a fixed resolution buffer of (('gas', 'Density')) 800 by 800
yt: INFO: Making a fixed resolution buffer of (('gas', 'Density')) 800 by 800
yt: INFO: Saving plot UniformGridData_Projection_y_Density.png
--------------------- >> end captured logging << ---------------------
======================================================================
ERROR: Main test suite for PlotWindow.
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/visualization/tests/test_plotwindow.py",> line 55, in assert_fname
import magic
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/magic.py", line 19, in <module>
_libraries['magic'] = _init()
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/magic.py", line 16, in _init
return ctypes.cdll.LoadLibrary(find_library('magic'))
File "/home/slave/yt-x86_64/lib/python2.7/ctypes/util.py", line 213, in find_library
return _findSoname_ldconfig(name) or _get_soname(_findLib_gcc(name))
File "/home/slave/yt-x86_64/lib/python2.7/ctypes/util.py", line 202, in _findSoname_ldconfig
f = os.popen('/sbin/ldconfig -p 2>/dev/null')
OSError: [Errno 12] Cannot allocate memory
-------------------- >> begin captured logging << --------------------
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSlice'>)
yt: DEBUG: Reading 4096 cells of ['Density'] fields in 1 blocks
yt: INFO: xlim = 0.000000 1.000000
yt: INFO: ylim = 0.000000 1.000000
yt: INFO: Making a fixed resolution buffer of (('gas', 'Density')) 800 by 800
yt: INFO: Saving plot UniformGridData_Slice_z_Density.png
--------------------- >> end captured logging << ---------------------
======================================================================
ERROR: Main test suite for PlotWindow.
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/visualization/tests/test_plotwindow.py",> line 55, in assert_fname
import magic
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/magic.py", line 19, in <module>
_libraries['magic'] = _init()
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/magic.py", line 16, in _init
return ctypes.cdll.LoadLibrary(find_library('magic'))
File "/home/slave/yt-x86_64/lib/python2.7/ctypes/util.py", line 213, in find_library
return _findSoname_ldconfig(name) or _get_soname(_findLib_gcc(name))
File "/home/slave/yt-x86_64/lib/python2.7/ctypes/util.py", line 202, in _findSoname_ldconfig
f = os.popen('/sbin/ldconfig -p 2>/dev/null')
OSError: [Errno 12] Cannot allocate memory
-------------------- >> begin captured logging << --------------------
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTQuadTreeProj'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 262144 cells of ['Density'] fields in 1 blocks
yt: DEBUG: Adding chunk (262144) to tree
yt: DEBUG: Setting field ('gas', 'Density')
yt: INFO: Projection completed
yt: INFO: xlim = 0.000000 1.000000
yt: INFO: ylim = 0.000000 1.000000
yt: INFO: Making a fixed resolution buffer of (('gas', 'Density')) 800 by 800
yt: INFO: xlim = 0.000000 1.000000
yt: INFO: ylim = 0.000000 1.000000
yt: INFO: Making a fixed resolution buffer of (('gas', 'Density')) 800 by 800
yt: INFO: Making a fixed resolution buffer of (('gas', 'Density')) 800 by 800
yt: INFO: Saving plot UniformGridData_Projection_z_Density.png
--------------------- >> end captured logging << ---------------------
======================================================================
ERROR: Main test suite for PlotWindow.
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/visualization/tests/test_plotwindow.py",> line 55, in assert_fname
import magic
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/magic.py", line 19, in <module>
_libraries['magic'] = _init()
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/magic.py", line 16, in _init
return ctypes.cdll.LoadLibrary(find_library('magic'))
File "/home/slave/yt-x86_64/lib/python2.7/ctypes/util.py", line 213, in find_library
return _findSoname_ldconfig(name) or _get_soname(_findLib_gcc(name))
File "/home/slave/yt-x86_64/lib/python2.7/ctypes/util.py", line 202, in _findSoname_ldconfig
f = os.popen('/sbin/ldconfig -p 2>/dev/null')
OSError: [Errno 12] Cannot allocate memory
-------------------- >> begin captured logging << --------------------
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTCuttingPlane'>)
yt: DEBUG: Reading 9227 cells of ['Density'] fields in 1 blocks
yt: INFO: xlim = -0.500000 0.500000
yt: INFO: ylim = -0.500000 0.500000
yt: INFO: Saving plot UniformGridData_OffAxisSlice_Density.png
--------------------- >> end captured logging << ---------------------
======================================================================
ERROR: Failure: TypeError (object of type 'NoneType' has no len())
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/loader.py", line 231, in generate
for test in g():
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/visualization/tests/test_plotwindow.py",> line 92, in test_plotwindow
obj = OffAxisProjectionPlot(test_pf, normal, 'Density')
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/visualization/plot_window.py",> line 1405, in __init__
PWViewerMPL.__init__(self,OffAxisProj,bounds,origin='center-window',periodic=False,oblique=True)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/visualization/plot_window.py",> line 763, in __init__
PWViewer.__init__(self, *args, **kwargs)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/visualization/plot_window.py",> line 533, in __init__
PlotWindow.__init__(self, *args,**kwargs)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/visualization/plot_window.py",> line 271, in __init__
self.set_window(bounds) # this automatically updates the data and plot
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/visualization/plot_window.py",> line 87, in newfunc
args[0]._recreate_frb()
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/visualization/plot_window.py",> line 323, in _recreate_frb
self._frb._get_data_source_fields()
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/visualization/fixed_resolution.py",> line 152, in _get_data_source_fields
self[f]
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/visualization/fixed_resolution.py",> line 487, in __getitem__
north_vector=ds.north_vector)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/visualization/volume_rendering/camera.py",> line 1864, in off_axis_projection
image = projcam.snapshot()
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/visualization/volume_rendering/camera.py",> line 1789, in snapshot
image, sampler),
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/visualization/volume_rendering/camera.py",> line 1744, in _render
pb = get_pbar("Sampling ", len(grids))
TypeError: object of type 'NoneType' has no len()
-------------------- >> begin captured logging << --------------------
yt: INFO: xlim = -0.500000 0.500000
yt: INFO: ylim = -0.500000 0.500000
yt: INFO: zlim = -0.500000 0.500000
yt: INFO: Making a fixed resolutuion buffer of (Density) 800 by 800
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
--------------------- >> end captured logging << ---------------------
======================================================================
FAIL: Accessing_AbsDivV_8
----------------------------------------------------------------------
Traceback (most recent call last):
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
self.test(*self.arg)
File "<https://jenkins.shiningpanda-ci.com/yt-project/job/py2.7-yt_analysis-3.0/ws/yt/data_objects/tests/test_fields.py",> line 73, in __call__
assert_equal(v1, conv*field._function(field, dd2))
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/numpy/testing/utils.py", line 256, in assert_equal
return assert_array_equal(actual, desired, err_msg, verbose)
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/numpy/testing/utils.py", line 707, in assert_array_equal
verbose=verbose, header='Arrays are not equal')
File "/home/slave/yt-x86_64/lib/python2.7/site-packages/numpy/testing/utils.py", line 636, in assert_array_compare
raise AssertionError(msg)
AssertionError:
Arrays are not equal
(mismatch 2.197265625%)
x: array([ 23983.74625063, 15982.2744407 , 15991.76694113, ...,
15989.47893011, 15989.63800906, 23991.00552 ])
y: array([ 23983.74625063, 15982.2744407 , 15991.76694113, ...,
15989.47893011, 15989.63800906, 23991.00552 ])
>> raise AssertionError('\nArrays are not equal\n\n(mismatch 2.197265625%)\n x: array([ 23983.74625063, 15982.2744407 , 15991.76694113, ...,\n 15989.47893011, 15989.63800906, 23991.00552 ])\n y: array([ 23983.74625063, 15982.2744407 , 15991.76694113, ...,\n 15989.47893011, 15989.63800906, 23991.00552 ])')
-------------------- >> begin captured logging << --------------------
yt: INFO: Parameters: current_time = 0.0
yt: INFO: Parameters: domain_dimensions = [16 16 16]
yt: INFO: Parameters: domain_left_edge = [ 0. 0. 0.]
yt: INFO: Parameters: domain_right_edge = [ 1. 1. 1.]
yt: INFO: Parameters: cosmological_simulation = 0.0
yt: INFO: Parameters: current_time = 0.0
yt: INFO: Parameters: domain_dimensions = [16 16 16]
yt: INFO: Parameters: domain_left_edge = [ 0. 0. 0.]
yt: INFO: Parameters: domain_right_edge = [ 1. 1. 1.]
yt: INFO: Parameters: cosmological_simulation = 0.0
yt: DEBUG: Initializing data storage.
yt: DEBUG: Setting up classes.
yt: DEBUG: Setting up domain geometry.
yt: DEBUG: Counting grids.
yt: DEBUG: Initializing grid arrays.
yt: DEBUG: Allocating arrays for 8 grids
yt: DEBUG: Parsing hierarchy.
yt: DEBUG: Copying reverse tree
yt: DEBUG: Preparing grids
yt: DEBUG: Prepared 0 / 8 grids
yt: DEBUG: Prepared
yt: DEBUG: Constructing grid objects.
yt: DEBUG: Re-examining hierarchy
yt: DEBUG: Initializing data grid data IO
yt: DEBUG: Detecting fields.
yt: DEBUG: Adding unknown detected fields
yt: DEBUG: Checking ['z-velocity', 'y-velocity', 'x-velocity', 'Density']
yt: INFO: Adding unknown field z-velocity to list of fields
yt: INFO: Adding unknown field y-velocity to list of fields
yt: INFO: Adding unknown field x-velocity to list of fields
yt: INFO: Adding unknown field Density to list of fields
yt: DEBUG: Setting up derived fields
yt: DEBUG: Generating vorticity on defaultdict(<function <lambda> at 0xf6df5f0>, {'dz': array([ 1.]), 'dx': array([ 1.]), 'dy': array([ 1.])})
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 4096 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1384 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Reading 4096 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTSmoothedCoveringGrid'>)
yt: DEBUG: Appending object to UniformGridData (type: <class 'yt.geometry.geometry_handler.YTRegion'>)
yt: DEBUG: Reading 1000 cells of ['z-velocity', 'y-velocity', 'x-velocity'] fields in 8 blocks
--------------------- >> end captured logging << ---------------------
----------------------------------------------------------------------
Ran 2116 tests in 678.224s
FAILED (errors=15, failures=1)
Build step 'Custom Python Builder' marked build as failure
Recording test results
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