[Yt-svn] commit/yt: 9 new changesets

Bitbucket commits-noreply at bitbucket.org
Sat Oct 29 10:13:47 PDT 2011


9 new commits in yt:


https://bitbucket.org/yt_analysis/yt/changeset/98c60a94cf33/
changeset:   98c60a94cf33
branch:      yt
user:        jsoishi
date:        2011-10-28 19:40:42
summary:     updated dependencies
affected #:  1 file

diff -r 0eb936dbc3431bb5fce2e42aba1796d3ad38d1ef -r 98c60a94cf33f31149b5beb07b75a5b97c513eae doc/install_script.sh
--- a/doc/install_script.sh
+++ b/doc/install_script.sh
@@ -292,7 +292,7 @@
 if [ -z "$HDF5_DIR" ]
 then
     echo "Downloading HDF5"
-    get_enzotools hdf5-1.8.6.tar.gz
+    get_enzotools hdf5-1.8.7.tar.gz
 fi
 
 [ $INST_ZLIB -eq 1 ] && get_enzotools zlib-1.2.3.tar.bz2 
@@ -300,14 +300,14 @@
 [ $INST_PNG -eq 1 ] && get_enzotools libpng-1.2.43.tar.gz
 [ $INST_FTYPE -eq 1 ] && get_enzotools freetype-2.4.4.tar.gz
 [ $INST_SQLITE3 -eq 1 ] && get_enzotools sqlite-autoconf-3070500.tar.gz
-get_enzotools Python-2.7.1.tgz
-get_enzotools numpy-1.5.1.tar.gz
-get_enzotools matplotlib-1.0.0.tar.gz
+get_enzotools Python-2.7.2.tgz
+get_enzotools numpy-1.6.1.tar.gz
+get_enzotools matplotlib-1.1.0.tar.gz
 get_enzotools mercurial-1.8.1.tar.gz
 get_enzotools ipython-0.10.tar.gz
-get_enzotools h5py-1.3.1.tar.gz
+get_enzotools h5py-2.0.1.tar.gz
 get_enzotools Cython-0.15.tar.gz
-get_enzotools Forthon-0.8.4.tar.gz
+get_enzotools Forthon-0.8.5.tar.gz
 get_enzotools ext-3.3.2.zip
 get_enzotools ext-slate-110328.zip
 get_enzotools PhiloGL-1.1.0.zip
@@ -392,11 +392,11 @@
 
 if [ -z "$HDF5_DIR" ]
 then
-    if [ ! -e hdf5-1.8.6/done ]
+    if [ ! -e hdf5-1.8.7/done ]
     then
-        [ ! -e hdf5-1.8.6 ] && tar xfz hdf5-1.8.6.tar.gz
+        [ ! -e hdf5-1.8.7 ] && tar xfz hdf5-1.8.7.tar.gz
         echo "Installing HDF5"
-        cd hdf5-1.8.6
+        cd hdf5-1.8.7
         ( ./configure --prefix=${DEST_DIR}/ --enable-shared 2>&1 ) 1>> ${LOG_FILE} || do_exit
         ( make ${MAKE_PROCS} install 2>&1 ) 1>> ${LOG_FILE} || do_exit
         touch done
@@ -422,11 +422,11 @@
     fi
 fi
 
-if [ ! -e Python-2.7.1/done ]
+if [ ! -e Python-2.7.2/done ]
 then
     echo "Installing Python.  This may take a while, but don't worry.  YT loves you."
-    [ ! -e Python-2.7.1 ] && tar xfz Python-2.7.1.tgz
-    cd Python-2.7.1
+    [ ! -e Python-2.7.2 ] && tar xfz Python-2.7.2.tgz
+    cd Python-2.7.2
     ( ./configure --prefix=${DEST_DIR}/ 2>&1 ) 1>> ${LOG_FILE} || do_exit
 
     ( make ${MAKE_PROCS} 2>&1 ) 1>> ${LOG_FILE} || do_exit
@@ -488,7 +488,7 @@
 echo "Installing pip"
 ( ${DEST_DIR}/bin/easy_install-2.7 pip 2>&1 ) 1>> ${LOG_FILE} || do_exit
 
-do_setup_py numpy-1.5.1 ${NUMPY_ARGS}
+do_setup_py numpy-1.6.1 ${NUMPY_ARGS}
 
 if [ -n "${MPL_SUPP_LDFLAGS}" ]
 then
@@ -509,10 +509,10 @@
     echo "Setting CFLAGS ${CFLAGS}"
 fi
 # Now we set up the basedir for matplotlib:
-mkdir -p ${DEST_DIR}/src/matplotlib-1.0.0
-echo "[directories]" >> ${DEST_DIR}/src/matplotlib-1.0.0/setup.cfg
-echo "basedirlist = ${DEST_DIR}" >> ${DEST_DIR}/src/matplotlib-1.0.0/setup.cfg
-do_setup_py matplotlib-1.0.0
+mkdir -p ${DEST_DIR}/src/matplotlib-1.1.0
+echo "[directories]" >> ${DEST_DIR}/src/matplotlib-1.1.0/setup.cfg
+echo "basedirlist = ${DEST_DIR}" >> ${DEST_DIR}/src/matplotlib-1.1.0/setup.cfg
+do_setup_py matplotlib-1.1.0
 if [ -n "${OLD_LDFLAGS}" ]
 then
     export LDFLAG=${OLD_LDFLAGS}
@@ -521,9 +521,9 @@
 [ -n "${OLD_CXXFLAGS}" ] && export CXXFLAGS=${OLD_CXXFLAGS}
 [ -n "${OLD_CFLAGS}" ] && export CFLAGS=${OLD_CFLAGS}
 do_setup_py ipython-0.10
-do_setup_py h5py-1.3.1
+do_setup_py h5py-2.0.1
 do_setup_py Cython-0.15
-[ $INST_FORTHON -eq 1 ] && do_setup_py Forthon-0.8.4
+[ $INST_FORTHON -eq 1 ] && do_setup_py Forthon-0.8.5
 
 echo "Doing yt update, wiping local changes and updating to branch ${BRANCH}"
 MY_PWD=`pwd`



https://bitbucket.org/yt_analysis/yt/changeset/08c0c7172002/
changeset:   08c0c7172002
branch:      yt
user:        jsoishi
date:        2011-10-28 20:22:04
summary:     corrected Forthon file name
affected #:  1 file

diff -r 98c60a94cf33f31149b5beb07b75a5b97c513eae -r 08c0c717200239fc156ba6bd2ecab1a8b28b9038 doc/install_script.sh
--- a/doc/install_script.sh
+++ b/doc/install_script.sh
@@ -307,7 +307,7 @@
 get_enzotools ipython-0.10.tar.gz
 get_enzotools h5py-2.0.1.tar.gz
 get_enzotools Cython-0.15.tar.gz
-get_enzotools Forthon-0.8.5.tar.gz
+get_enzotools Forthon-0.8.5.tgz
 get_enzotools ext-3.3.2.zip
 get_enzotools ext-slate-110328.zip
 get_enzotools PhiloGL-1.1.0.zip



https://bitbucket.org/yt_analysis/yt/changeset/51706808bddd/
changeset:   51706808bddd
branch:      yt
user:        jsoishi
date:        2011-10-28 22:56:04
summary:     corrected do_setup_py for new h5py
affected #:  1 file

diff -r 08c0c717200239fc156ba6bd2ecab1a8b28b9038 -r 51706808bddd696489e430997ecfc2c42a46a528 doc/install_script.sh
--- a/doc/install_script.sh
+++ b/doc/install_script.sh
@@ -257,11 +257,12 @@
     cd $1
     if [ ! -z `echo $1 | grep h5py` ]
     then
-	    echo "${DEST_DIR}/bin/python2.7 setup.py configure --hdf5=${HDF5_DIR}"
-	    ( ${DEST_DIR}/bin/python2.7 setup.py configure --hdf5=${HDF5_DIR} 2>&1 ) 1>> ${LOG_FILE} || do_exit
+        shift
+	( ${DEST_DIR}/bin/python2.7 setup.py build --hdf5=${HDF5_DIR} $* 2>&1 ) 1>> ${LOG_FILE} || do_exit
+    else
+        shift
+        ( ${DEST_DIR}/bin/python2.7 setup.py build   $* 2>&1 ) 1>> ${LOG_FILE} || do_exit
     fi
-    shift
-    ( ${DEST_DIR}/bin/python2.7 setup.py build   $* 2>&1 ) 1>> ${LOG_FILE} || do_exit
     ( ${DEST_DIR}/bin/python2.7 setup.py install    2>&1 ) 1>> ${LOG_FILE} || do_exit
     touch done
     cd ..



https://bitbucket.org/yt_analysis/yt/changeset/914a0ad2ab9f/
changeset:   914a0ad2ab9f
branch:      yt
user:        jsoishi
date:        2011-10-29 00:07:12
summary:     removed outdated H5py error to be compatible with h5py-2.0. however, this could catch exceptions it shouldn't!
affected #:  1 file

diff -r 51706808bddd696489e430997ecfc2c42a46a528 -r 914a0ad2ab9ff101aff811df967db27525332a0b yt/frontends/enzo/data_structures.py
--- a/yt/frontends/enzo/data_structures.py
+++ b/yt/frontends/enzo/data_structures.py
@@ -291,7 +291,7 @@
         if not ytcfg.getboolean("yt","serialize"): return False
         try:
             f = h5py.File(self.hierarchy_filename[:-9] + "harrays")
-        except h5py.h5.H5Error:
+        except:
             return False
         self.grid_dimensions[:] = f["/ActiveDimensions"][:]
         self.grid_left_edge[:] = f["/LeftEdges"][:]



https://bitbucket.org/yt_analysis/yt/changeset/bb1e568523b4/
changeset:   bb1e568523b4
branch:      yt
user:        jsoishi
date:        2011-10-29 17:07:46
summary:     fixed Forthon filename (again)
affected #:  1 file

diff -r 51706808bddd696489e430997ecfc2c42a46a528 -r bb1e568523b443d460ec951a7324264255a0f1ab doc/install_script.sh
--- a/doc/install_script.sh
+++ b/doc/install_script.sh
@@ -308,7 +308,7 @@
 get_enzotools ipython-0.10.tar.gz
 get_enzotools h5py-2.0.1.tar.gz
 get_enzotools Cython-0.15.tar.gz
-get_enzotools Forthon-0.8.5.tgz
+get_enzotools Forthon-0.8.5.tar.gz
 get_enzotools ext-3.3.2.zip
 get_enzotools ext-slate-110328.zip
 get_enzotools PhiloGL-1.1.0.zip



https://bitbucket.org/yt_analysis/yt/changeset/6533260c1df3/
changeset:   6533260c1df3
branch:      yt
user:        jsoishi
date:        2011-10-29 17:08:32
summary:     updated a few more dependences as called for by Matt
affected #:  1 file

diff -r bb1e568523b443d460ec951a7324264255a0f1ab -r 6533260c1df3f34c035ef5423d11f2c51e8c17a6 doc/install_script.sh
--- a/doc/install_script.sh
+++ b/doc/install_script.sh
@@ -307,11 +307,11 @@
 get_enzotools mercurial-1.8.1.tar.gz
 get_enzotools ipython-0.10.tar.gz
 get_enzotools h5py-2.0.1.tar.gz
-get_enzotools Cython-0.15.tar.gz
+get_enzotools Cython-0.15.1.tar.gz
 get_enzotools Forthon-0.8.5.tar.gz
 get_enzotools ext-3.3.2.zip
 get_enzotools ext-slate-110328.zip
-get_enzotools PhiloGL-1.1.0.zip
+get_enzotools PhiloGL-1.4.2.zip
 
 if [ $INST_BZLIB -eq 1 ]
 then



https://bitbucket.org/yt_analysis/yt/changeset/1914d988a0d2/
changeset:   1914d988a0d2
branch:      yt
user:        jsoishi
date:        2011-10-29 17:08:57
summary:     merged.
affected #:  1 file

diff -r 6533260c1df3f34c035ef5423d11f2c51e8c17a6 -r 1914d988a0d25a9752e5a71b1ed2c58e17e57fbc yt/frontends/enzo/data_structures.py
--- a/yt/frontends/enzo/data_structures.py
+++ b/yt/frontends/enzo/data_structures.py
@@ -291,7 +291,7 @@
         if not ytcfg.getboolean("yt","serialize"): return False
         try:
             f = h5py.File(self.hierarchy_filename[:-9] + "harrays")
-        except h5py.h5.H5Error:
+        except:
             return False
         self.grid_dimensions[:] = f["/ActiveDimensions"][:]
         self.grid_left_edge[:] = f["/LeftEdges"][:]



https://bitbucket.org/yt_analysis/yt/changeset/423347e61ef1/
changeset:   423347e61ef1
branch:      yt
user:        jsoishi
date:        2011-10-29 17:35:29
summary:     another typo
affected #:  1 file

diff -r 1914d988a0d25a9752e5a71b1ed2c58e17e57fbc -r 423347e61ef17c69753d6927124de22bab6058b5 doc/install_script.sh
--- a/doc/install_script.sh
+++ b/doc/install_script.sh
@@ -523,7 +523,7 @@
 [ -n "${OLD_CFLAGS}" ] && export CFLAGS=${OLD_CFLAGS}
 do_setup_py ipython-0.10
 do_setup_py h5py-2.0.1
-do_setup_py Cython-0.15
+do_setup_py Cython-0.15.1
 [ $INST_FORTHON -eq 1 ] && do_setup_py Forthon-0.8.5
 
 echo "Doing yt update, wiping local changes and updating to branch ${BRANCH}"



https://bitbucket.org/yt_analysis/yt/changeset/be4b986161b2/
changeset:   be4b986161b2
branch:      yt
user:        jsoishi
date:        2011-10-29 17:41:08
summary:     more typos.
affected #:  1 file

diff -r 423347e61ef17c69753d6927124de22bab6058b5 -r be4b986161b2e776efc2ad5f0e14a71e3729084d doc/install_script.sh
--- a/doc/install_script.sh
+++ b/doc/install_script.sh
@@ -567,12 +567,12 @@
 fi
 
 # Now we open up PhiloGL
-if [ ! -e PhiloGL-1.1.0/done ]
+if [ ! -e PhiloGL-1.4.2/done ]
 then
-    ( unzip -o PhiloGL-1.1.0.zip 2>&1 ) 1>> ${LOG_FILE} || do_exit
-    ( echo "Symlinking PhiloGL-1.1.0 as PhiloGL" 2>&1 ) 1>> ${LOG_FILE}
-    ln -sf PhiloGL-1.1.0 PhiloGL
-    touch PhiloGL-1.1.0/done
+    ( unzip -o PhiloGL-1.4.2.zip 2>&1 ) 1>> ${LOG_FILE} || do_exit
+    ( echo "Symlinking PhiloGL-1.4.2 as PhiloGL" 2>&1 ) 1>> ${LOG_FILE}
+    ln -sf PhiloGL-1.4.2 PhiloGL
+    touch PhiloGL-1.4.2/done
 fi
 
 if [ -e $HOME/.matplotlib/fontList.cache ] && \

Repository URL: https://bitbucket.org/yt_analysis/yt/

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