<div><div dir="auto">Sorry, typo, that should read “fork”, not “form” (stupid autocorrect).</div><br><div class="gmail_quote"><div>On Tue, Nov 28, 2017 at 10:33 PM Nathan Goldbaum <<a href="mailto:nathan12343@gmail.com">nathan12343@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div dir="auto">Hi Sean,</div><div dir="auto"><br></div><div dir="auto">This is a known issue and fixing it will require a fix in our form of rockstsar. I’m personally unsure how to fix it. See <a href="https://github.com/yt-project/yt/issues/1289" target="_blank">https://github.com/yt-project/yt/issues/1289</a></div><div dir="auto"><br></div><div dir="auto">If you have any idea how to modify rockstar to fix this that would be very much appreciated.</div><div dir="auto"><br></div><div dir="auto">If you build on Linux you will likely not hit this issue.</div></div><div><div dir="auto"><br></div><div dir="auto">Nathan</div></div><div><br><div class="gmail_quote"><div>On Tue, Nov 28, 2017 at 8:49 PM Sean Larkin <<a href="mailto:sflarkin@ucsc.edu" target="_blank">sflarkin@ucsc.edu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div>I have been trying to install Rockstar with yt onto a computer running macOS sierra 10.12, using both the install script and manually.<div><br></div><div>For the install script, I get this error:</div><div><br></div><div>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1">Building Rockstar</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1">********************************************</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>FAILURE REPORT:</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1">********************************************</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p2"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"></span><br></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>config=config)</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>File "/Users/user1/Rockstar/yt-conda/lib/python3.6/site-packages/conda_build/build.py", line 1147, in build</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>utils.check_call_env(cmd, env=env, cwd=src_dir)</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>File "/Users/user1/Rockstar/yt-conda/lib/python3.6/site-packages/conda_build/utils.py", line 628, in check_call_env</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>return _func_defaulting_env_to_os_environ(subprocess.check_call, *popenargs, **kwargs)</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>File "/Users/user1/Rockstar/yt-conda/lib/python3.6/site-packages/conda_build/utils.py", line 624, in _func_defaulting_env_to_os_environ</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>return func(_args, **kwargs)</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>File "/Users/user1/Rockstar/yt-conda/lib/python3.6/subprocess.py", line 291, in check_call</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>raise CalledProcessError(retcode, cmd)</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1">subprocess.CalledProcessError: Command '['/bin/bash', '-x', '-e', '/Users/user1/Rockstar/yt-conda/conda-bld/rockstar_1511919771484/work/conda_build.sh']' returned non-zero exit status 2.</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p2"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"></span><br></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1">********************************************</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1">********************************************</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1">Failure.<span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>Check /Users/user1/Rockstar/yt-conda/yt_install.log.<span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>The last 10 lines are above.</span></p></div><div><br></div><div><br></div><div><br></div><div><br></div><div><br></div><div>And when installing manually, after stating "make lib" i get this error:</div><div>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1">/bin/sh: pkg-config: command not found</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1">gcc -m64 -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -D_BSD_SOURCE -D_POSIX_SOURCE -D_POSIX_C_SOURCE=200809L -D_SVID_SOURCE -D_DARWIN_C_SOURCE -Wall -fno-math-errno -fPIC<span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>-shared rockstar.c check_syscalls.c fof.c groupies.c subhalo_metric.c potential.c nfw.c jacobi.c fun_times.c interleaving.c universe_time.c hubble.c integrate.c distance.c config_vars.c config.c bounds.c inthash.c io/read_config.c client.c server.c merger.c inet/socket.c inet/rsocket.c inet/address.c io/meta_io.c io/io_internal.c io/io_ascii.c io/stringparse.c io/io_gadget.c io/io_generic.c io/io_art.c io/io_tipsy.c io/io_bgc2.c io/io_util.c io/io_arepo.c io/io_hdf5.c -o librockstar.so -lm -O3 -std=c99</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1">In file included from server.c:241:</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><b>./load_balance.c:8:21: </b></span><span class="m_5262744209683193638m_8480079754371599826gmail-s2"><b>warning: </b></span><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><b>using floating point absolute value function</b></span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><b><span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>'fabs' when argument is of integer type [-Wabsolute-value]</b></span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>i = ceil(sqrt(fabs(in)))+1;</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p2"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><b><span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>^</b></span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><b>./load_balance.c:8:21: </b></span><span class="m_5262744209683193638m_8480079754371599826gmail-s3"><b>note: </b></span><span class="m_5262744209683193638m_8480079754371599826gmail-s1">use function 'llabs' instead</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>i = ceil(sqrt(fabs(in)))+1;</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p2"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><b><span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>^~~~</b></span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p2"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>llabs</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1">1 warning generated.</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1">Undefined symbols for architecture x86_64:</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>"_GROUPIES_fast3tree_box_inside_sphere", referenced from:</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1"><span class="m_5262744209683193638m_8480079754371599826gmail-Apple-converted-space"> </span>_GROUPIES_fast3tree_find_sphere_offset in groupies-eb1fe8.o</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1">ld: symbol(s) not found for architecture x86_64</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1">clang: </span><span class="m_5262744209683193638m_8480079754371599826gmail-s4"><b>error: </b></span><span class="m_5262744209683193638m_8480079754371599826gmail-s1">linker command failed with exit code 1 (use -v to see invocation)</span></p>
<p class="m_5262744209683193638m_8480079754371599826gmail-p1"><span class="m_5262744209683193638m_8480079754371599826gmail-s1">make: *** [lib] Error 1</span></p></div><div><br></div><div>I am not sure what is causing the error for install script, but for the manual install, I think it is clang using the wrong c++ standard library. I have attempted to change the library used, but nothing has worked for me so far.</div></div>
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