<div dir="ltr">Done:<div><br></div><div><a href="https://github.com/yt-project/yt/pull/1458/files">https://github.com/yt-project/yt/pull/1458/files</a><br></div><div><br></div><div>You should be able to get an updated install script by downloading it from my fork:</div><div><br></div><div>$ wget <a href="https://raw.githubusercontent.com/ngoldbaum/yt/27dafcdaf068829c78f34c4c7211f6dd56beea0d/doc/install_script.sh">https://raw.githubusercontent.com/ngoldbaum/yt/27dafcdaf068829c78f34c4c7211f6dd56beea0d/doc/install_script.sh</a></div><div><br></div><div>-Nathan</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Jun 19, 2017 at 9:31 AM, Carla Bernhardt <span dir="ltr"><<a href="mailto:carla.j.bernhardt@gmail.com" target="_blank">carla.j.bernhardt@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">Hi Nathan,<div><br></div><div>I don't mind waiting, I think you will do a better job updating the script. I tried before, but the installation still failed. I am not using MacOS, I am on a server using Redhat.</div><div><br></div><div>Cheers,</div><div>Carla</div></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><div class="gmail_quote">2017-06-19 15:43 GMT+02:00 Nathan Goldbaum <span dir="ltr"><<a href="mailto:nathan12343@gmail.com" target="_blank">nathan12343@gmail.com</a>></span>:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div dir="auto">No, I haven't seen that error before.</div><div dir="auto"><br></div><div dir="auto">I'll be heading into the office shortly and will update the install script when I get in. If you can't wait on me, you could try updating it yourself to download the latest cython release from e.g. pypi.</div><div dir="auto"><br></div><div dir="auto">By the way, do you happen to be using the latest version of MacOS? In that case building rockstar from source will not work:</div><div dir="auto"><br></div><div dir="auto"><a href="https://github.com/yt-project/yt/issues/1289" target="_blank">https://github.com/yt-project/<wbr>yt/issues/1289</a></div><span class="m_-428581865868733695HOEnZb"><font color="#888888"><div dir="auto"><br></div><div dir="auto">Nathan</div></font></span><div><div class="m_-428581865868733695h5"><br><div class="gmail_quote"><div>On Mon, Jun 19, 2017 at 8:32 AM Carla Bernhardt <<a href="mailto:carla.j.bernhardt@gmail.com" target="_blank">carla.j.bernhardt@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div>Hi Nathan,<div><br></div><div>I did try running with rockstar install enabled, INST_CONDA=1 and INST_YT_SOURCE=1 and I got <a href="https://pastebin.com/EWXsbzCx" target="_blank">this strange error</a> that I don't have the file "libisl.so.10". Any suggestions on that? I wasn't able to find anything helpful about this online. I just want to get a working version of yt going with rockstar enabled, it doesn't have to be from source.</div><div><br></div><div>Cheers,</div><div>Carla</div>
</div><div class="gmail_extra"><br><div class="gmail_quote">2017-06-19 15:17 GMT+02:00 Nathan Goldbaum <span><<a href="mailto:nathan12343@gmail.com" target="_blank">nathan12343@gmail.com</a>></span>:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div dir="auto">Hi Carla,</div><div dir="auto"><br></div><div dir="auto">I think we need to update the install script for the case with INST_CONDA=0. For now you should be able to set INST_CONDA=1 and still get rockstar setup, we made it so you can use rockstar with a conda-based install a while back.</div><div dir="auto"><br></div><div dir="auto">Nathan</div><br><div class="gmail_quote"><div><div class="m_-428581865868733695m_8075718787077433509m_5730497828985017502h5"><div>On Mon, Jun 19, 2017 at 6:34 AM Carla Bernhardt <<a href="mailto:carla.j.bernhardt@gmail.com" target="_blank">carla.j.bernhardt@gmail.com</a>> wrote:<br></div></div></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div><div class="m_-428581865868733695m_8075718787077433509m_5730497828985017502h5"><div>Dear yt-users,<div><br></div><div>I am trying to compile yt with rockstar enabled, so I am having yt install itself from source. The code downloads Cython 0.23.5, but later then requires Cython 0.24+. I tried downloading Cython-0.25.2, but this failed (I probably did it wrong). What do I need to change to make the install_script.sh work with Cython?</div><div><br></div><div>Here is a piece of the failure report I got:</div><div><br></div><div><font face="monospace, monospace">Installing GitPython-2.1.3<br>Installing sympy-1.0<br>Building Rockstar<br>Installing yt<br>******************************<wbr>**************<br> FAILURE REPORT:<br>******************************<wbr>**************<br><br> File "/home/hd/hd_hd/hd_ri129/yt-x8<wbr>6_64/lib/python3.5/site-packag<wbr>es/setuptools-20.6.7-py3.5.<wbr>egg/setuptools/command/sdist.<wbr>py", line 132, in add_defaults<br> File "/home/hd/hd_hd/hd_ri129/yt-x8<wbr>6_64/lib/python3.5/distutils/<wbr>cmd.py", line 299, in get_finalized_command<br> cmd_obj.ensure_finalized()<br> File "/home/hd/hd_hd/hd_ri129/yt-x8<wbr>6_64/lib/python3.5/distutils/<wbr>cmd.py", line 107, in ensure_finalized<br> self.finalize_options()<br> File "setup.py", line 308, in finalize_options<br> cython.__version__)<br>RuntimeError: Building yt from source requires Cython 0.24 or newer but<br>Cython 0.23.5 is installed. Please update Cython using the appropriate<br>package manager for your python environment.<br><br>******************************<wbr>**************<br>******************************<wbr>**************</font></div><div><br></div><div>Cheers,</div><div>Carla Bernhardt</div><div>PhD Student</div><div>ZAH Institut für Theoretische Astrophysik</div><div>Universität Heidelberg</div>
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