<div dir="ltr"><div><div class="gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754gmail_msg">Ah sorry, I gave you bad advice in my initial e-mail.</div></div><div class="gmail-m_1543920529621523754gmail_msg"><br class="gmail-m_1543920529621523754gmail_msg"></div><div class="gmail-m_1543920529621523754gmail_msg">The cut_region selects individual cells in your simulation that have masses greater than the cutoff you chose. However that's not what the profile is giving you. It's showing you regions in density-temperature parameter space, with each box in this parameter space getting contributions from several zones in your simulation. The reason your PhasePlot made from the cut_region has "holes" you weren't expecting is that those regions are the ones preferentially filled by low-mass zones in your simulation.</div></div><div class="gmail-m_1543920529621523754gmail_msg"><br></div><div class="gmail-m_1543920529621523754gmail_msg">To get the plot you want you're going to need to mask out the 2D profile PhasePlot uses to create the 2D histogram plot. The most straightforward way to do this is to create the profile object manually using create_profile, tweak it by zeroing out histogram bins that don't contain enough mass, and then create a PhasePlot from the profile object using PhasePlot.from_profile.</div><div class="gmail-m_1543920529621523754gmail_msg"><br></div><div class="gmail-m_1543920529621523754gmail_msg">Here's a worked example showing how to do this:</div><div class="gmail-m_1543920529621523754gmail_msg"><br></div><div class="gmail-m_1543920529621523754gmail_msg"><a href="https://gist.github.com/3a2afd006be4d1918f28d98ef2a1e077">https://gist.github.com/3a2afd006be4d1918f28d98ef2a1e077</a><br></div><div class="gmail-m_1543920529621523754gmail_msg"><br></div><div class="gmail-m_1543920529621523754gmail_msg">Again, apologies for giving you bad advice on this issue initially, hope this example helps.</div><div class="gmail-m_1543920529621523754gmail_msg"><br></div><div class="gmail-m_1543920529621523754gmail_msg">-Nathan</div><div><div class="gmail-m_1543920529621523754gmail_msg"><br class="gmail-m_1543920529621523754gmail_msg"><div class="gmail_quote gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754gmail_msg">On Tue, Mar 28, 2017 at 1:32 AM Stephanie Tonnesen <<a href="mailto:stonnes@gmail.com" class="gmail-m_1543920529621523754gmail_msg" target="_blank">stonnes@gmail.com</a>> wrote:<br class="gmail-m_1543920529621523754gmail_msg"></div><blockquote class="gmail_quote gmail-m_1543920529621523754gmail_msg" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div class="gmail-m_1543920529621523754gmail_msg">Just to be clear, I *do* have weight_field=none set.<div class="gmail-m_1543920529621523754gmail_msg"><br class="gmail-m_1543920529621523754gmail_msg"></div><div class="gmail-m_1543920529621523754gmail_msg"><br class="gmail-m_1543920529621523754gmail_msg"></div></div><div class="gmail_extra gmail-m_1543920529621523754gmail_msg"></div><div class="gmail_extra gmail-m_1543920529621523754gmail_msg"><br clear="all" class="gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400gmail_signature gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754gmail_msg"><font face="garamond,serif" class="gmail-m_1543920529621523754gmail_msg">--<br class="gmail-m_1543920529621523754gmail_msg">Dr. Stephanie Tonnesen<br class="gmail-m_1543920529621523754gmail_msg"></font></div><font face="garamond,serif" class="gmail-m_1543920529621523754gmail_msg">Alvin E. Nashman Postdoctoral Fellow<br class="gmail-m_1543920529621523754gmail_msg"></font></div><font face="garamond,serif" class="gmail-m_1543920529621523754gmail_msg">Carnegie Observatories, Pasadena, CA<br class="gmail-m_1543920529621523754gmail_msg"></font></div><font face="garamond,serif" class="gmail-m_1543920529621523754gmail_msg"><a href="mailto:stonnes@gmail.com" class="gmail-m_1543920529621523754gmail_msg" target="_blank">stonnes@gmail.com</a><br class="gmail-m_1543920529621523754gmail_msg"></font></div></div></div>
<br class="gmail-m_1543920529621523754gmail_msg"></div><div class="gmail_extra gmail-m_1543920529621523754gmail_msg"><div class="gmail_quote gmail-m_1543920529621523754gmail_msg">On Mon, Mar 27, 2017 at 11:29 PM, Stephanie Tonnesen <span class="gmail-m_1543920529621523754gmail_msg"><<a href="mailto:stonnes@gmail.com" class="gmail-m_1543920529621523754gmail_msg" target="_blank">stonnes@gmail.com</a>></span> wrote:<br class="gmail-m_1543920529621523754gmail_msg"><blockquote class="gmail_quote gmail-m_1543920529621523754gmail_msg" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div class="gmail-m_1543920529621523754gmail_msg">Hi Nathan and yt-users,<div class="gmail-m_1543920529621523754gmail_msg"><br class="gmail-m_1543920529621523754gmail_msg"></div><div class="gmail-m_1543920529621523754gmail_msg">So I used the cut_region to only select cells with cell_mass > 1e36, and got a surprising plot (I think). I am attaching both 2d profiles here for comparison. I am not surprised that there are unfilled regions of the figure--those may have been filled with cells that had less than 1e36 g, although the positions are a bit strange. What I find really surprising is that so much more of the figure that has the mass cut is yellow--shoudn't there be equal or less mass than when I am not making a cut?</div><div class="gmail-m_1543920529621523754gmail_msg"><br class="gmail-m_1543920529621523754gmail_msg"></div><div class="gmail-m_1543920529621523754gmail_msg">Thanks,</div><div class="gmail-m_1543920529621523754gmail_msg">Stephanie</div><div class="gmail-m_1543920529621523754gmail_msg"><br class="gmail-m_1543920529621523754gmail_msg"></div></div><div class="gmail_extra gmail-m_1543920529621523754gmail_msg"><span class="gmail-m_1543920529621523754gmail_msg"><br clear="all" class="gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604gmail_signature gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754gmail_msg"><font face="garamond,serif" class="gmail-m_1543920529621523754gmail_msg">--<br class="gmail-m_1543920529621523754gmail_msg">Dr. Stephanie Tonnesen<br class="gmail-m_1543920529621523754gmail_msg"></font></div><font face="garamond,serif" class="gmail-m_1543920529621523754gmail_msg">Alvin E. Nashman Postdoctoral Fellow<br class="gmail-m_1543920529621523754gmail_msg"></font></div><font face="garamond,serif" class="gmail-m_1543920529621523754gmail_msg">Carnegie Observatories, Pasadena, CA<br class="gmail-m_1543920529621523754gmail_msg"></font></div><font face="garamond,serif" class="gmail-m_1543920529621523754gmail_msg"><a href="mailto:stonnes@gmail.com" class="gmail-m_1543920529621523754gmail_msg" target="_blank">stonnes@gmail.com</a><br class="gmail-m_1543920529621523754gmail_msg"></font></div></div></div>
<br class="gmail-m_1543920529621523754gmail_msg"></span><div class="gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400h5 gmail-m_1543920529621523754gmail_msg"><div class="gmail_quote gmail-m_1543920529621523754gmail_msg">On Sun, Mar 26, 2017 at 6:38 PM, Stephanie Tonnesen <span class="gmail-m_1543920529621523754gmail_msg"><<a href="mailto:stonnes@gmail.com" class="gmail-m_1543920529621523754gmail_msg" target="_blank">stonnes@gmail.com</a>></span> wrote:<br class="gmail-m_1543920529621523754gmail_msg"><blockquote class="gmail_quote gmail-m_1543920529621523754gmail_msg" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div class="gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754gmail_msg">Hi Nathan,</div></div><div class="gmail-m_1543920529621523754gmail_msg"><br class="gmail-m_1543920529621523754gmail_msg"></div><div class="gmail-m_1543920529621523754gmail_msg">Thanks! I was hoping there was a way to do this within the plotting commands, but that will definitely work.</div><span class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604HOEnZb gmail-m_1543920529621523754gmail_msg"><font color="#888888" class="gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754gmail_msg"><br class="gmail-m_1543920529621523754gmail_msg"></div><div class="gmail-m_1543920529621523754gmail_msg">Stephanie</div></font></span><div class="gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604h5 gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754gmail_msg"><br class="gmail-m_1543920529621523754gmail_msg"><div class="gmail_quote gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754gmail_msg">On Sun, Mar 26, 2017 at 4:21 PM Nathan Goldbaum <<a href="mailto:nathan12343@gmail.com" class="gmail-m_1543920529621523754gmail_msg" target="_blank">nathan12343@gmail.com</a>> wrote:<br class="gmail-m_1543920529621523754gmail_msg"></div><blockquote class="gmail_quote gmail-m_1543920529621523754gmail_msg" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg">Hi Stephanie,</div></div><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><br class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"></div><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg">One way to do this would be to create the PhasePlot using a cut_region data object. If you're already using another data object to construct your phase plot, the cut_region could be passed to the other data object via the data_source keyword argument.</div><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><br class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"></div><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg">Nathan</div><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><br class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><div class="gmail_quote gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"></div></div><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><div class="gmail_quote gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg">On Sun, Mar 26, 2017 at 4:24 PM Stephanie Tonnesen <<a href="mailto:stonnes@gmail.com" class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg" target="_blank">stonnes@gmail.com</a>> wrote:<br class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"></div></div></div><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><div class="gmail_quote gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><blockquote class="gmail_quote gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg">Hi yt-users,<div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><br class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"></div><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg">I am trying to make some nice looking phaseplots, and want to set the mass range that I show in the figure. I use set_zlim and instead of only showing the cells that call into that mass range, it just changes the color coding. You can see the attached for what I am talking about. Is there a way to have phaseplot only show me the cells that have "cell_mass" larger that 1e36 (or whatever I happen to set)?</div><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><br class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"></div><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg">Thanks!</div><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><br class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"></div><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg">Stephanie</div><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><br clear="all" class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437m_-323219138124666752m_-4606464565181789390gmail_signature gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><font face="garamond,serif" class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg">--<br class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg">Dr. Stephanie Tonnesen<br class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"></font></div><font face="garamond,serif" class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg">Alvin E. Nashman Postdoctoral Fellow<br class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"></font></div><font face="garamond,serif" class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg">Carnegie Observatories, Pasadena, CA<br class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"></font></div><font face="garamond,serif" class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><a href="mailto:stonnes@gmail.com" class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg" target="_blank">stonnes@gmail.com</a><br class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"></font></div></div></div>
</div></div></blockquote></div></div><div class="gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><div class="gmail_quote gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg"><blockquote class="gmail_quote gmail-m_1543920529621523754m_-5230089865800533271m_1935999827328871400m_5996202469429180604m_-8611971988049539437gmail_msg gmail-m_1543920529621523754gmail_msg" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
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