<div dir="ltr">Hi Andreas,<div><br></div><div>I think you just need to change the instances of "radius_200" to "virial_radius" in your callback call.</div><div><br></div><div>Britton</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Wed, Mar 15, 2017 at 9:12 AM, Thor Andreas Seiff Ellewsen <span dir="ltr"><<a href="mailto:tellewsen@gmail.com" target="_blank">tellewsen@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div dir="ltr" class="m_-218451498418335587gmail_msg">Hi Britton,<div class="m_-218451498418335587gmail_msg"><br class="m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587gmail_msg">So I've tried what you suggested now, and when checking what the radius is, it works fine for the first sphere.</div><div class="m_-218451498418335587gmail_msg">However when making the second sphere using </div><div class="m_-218451498418335587gmail_msg"><div class="m_-218451498418335587gmail_msg">hc.add_callback('sphere', radius_field='radius_200', factor=5, field_parameters=dict(virial_<wbr>radius=('quantity', 'radius_200')))</div></div><div class="m_-218451498418335587gmail_msg">I find that radius = 0.0 cm</div><div class="m_-218451498418335587gmail_msg">which raises the error you mentioned.</div><div class="m_-218451498418335587gmail_msg"><br class="m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587gmail_msg">Which must mean that the radius_200 field is just zeros.</div><div class="m_-218451498418335587gmail_msg">So I assume the problem happens when calculating the virial quantities.</div><div class="m_-218451498418335587gmail_msg"><br></div><div class="m_-218451498418335587gmail_msg">I tried moving the debugging line down to that function, and find that none of my halos have an overdensity above 200(the critical overdensity), so basically it can't find r_200 since it doesn't exist.</div><div class="m_-218451498418335587gmail_msg">I'll have to look into what the problem with this is. AHF must have calculated the virial radius in another way than I thought.</div><div class="m_-218451498418335587gmail_msg"><br></div><div class="m_-218451498418335587gmail_msg">However I must be misunderstanding something, because I don't understand why it wants to calculate the virial radius again, when I already have one in the halo catalog I've imported.<br></div><div class="m_-218451498418335587gmail_msg">That virial radius is even used to make the first sphere. Is there some way to just construct the 'virial_radius_fraction' for each sphere just using the 'radius' field of the sphere and the corresponding value in the 'virial_radius' field contained in the Halo Catalog?</div><div class="m_-218451498418335587gmail_msg"><br></div><div class="m_-218451498418335587gmail_msg">Best,</div><div class="m_-218451498418335587gmail_msg">Andreas Ellewsen</div><div class="m_-218451498418335587gmail_msg"><br></div></div><br class="m_-218451498418335587gmail_msg"><div class="gmail_quote m_-218451498418335587gmail_msg"><div dir="ltr" class="m_-218451498418335587gmail_msg">On Tue, 14 Mar 2017 at 22:03 Britton Smith <<a href="mailto:brittonsmith@gmail.com" class="m_-218451498418335587gmail_msg" target="_blank">brittonsmith@gmail.com</a>> wrote:<br class="m_-218451498418335587gmail_msg"></div><blockquote class="gmail_quote m_-218451498418335587gmail_msg" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr" class="m_-218451498418335587gmail_msg">Hi Andreas,<div class="m_-218451498418335587gmail_msg"><br class="m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587gmail_msg">My guess is that there is an issue with the units of the spheres' radii. If you have yt installed from source, then you can stick a python debugger around line 89 of</div><div class="m_-218451498418335587gmail_msg">yt/analysis_modules/halo_<wbr>analysis/halo_callbacks.py<br class="m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587gmail_msg"><br class="m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587gmail_msg">Just add the following:</div><div class="m_-218451498418335587gmail_msg">import pdb ; pdb.set_trace()</div><div class="m_-218451498418335587gmail_msg"><br class="m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587gmail_msg">If that's not possible, then you might just try creating a single sphere object from the first object in your halo list.  The reason I suspect this is because if yt tries to create a sphere that does not contain any elements, the YTSphereTooSmall exception will be raised.  This exception is caught by the sphere halo callback, causing it to set the sphere object to None, as per the error message you're seeing.  If this is the problem, it will just be a matter of making sure that your radius field has the correct units on it.  Let us know if you need any help looking into this.</div></div><div dir="ltr" class="m_-218451498418335587gmail_msg"><div class="m_-218451498418335587gmail_msg"><br class="m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587gmail_msg">Britton</div></div><div class="gmail_extra m_-218451498418335587gmail_msg"><br class="m_-218451498418335587gmail_msg"><div class="gmail_quote m_-218451498418335587gmail_msg">On Tue, Mar 14, 2017 at 9:38 AM, Thor Andreas Seiff Ellewsen <span dir="ltr" class="m_-218451498418335587gmail_msg"><<a href="mailto:tellewsen@gmail.com" class="m_-218451498418335587gmail_msg" target="_blank">tellewsen@gmail.com</a>></span> wrote:<br class="m_-218451498418335587gmail_msg"><blockquote class="gmail_quote m_-218451498418335587gmail_msg" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr" class="m_-218451498418335587gmail_msg">Hi again folks<div class="m_-218451498418335587gmail_msg"><br class="m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587gmail_msg">I think I'm close to getting this to work now.</div><div class="m_-218451498418335587gmail_msg">Hopefully you can tell me what I'm doing wrong.</div><div class="m_-218451498418335587gmail_msg"><br class="m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587gmail_msg">I figured out why it was so slow.</div><div class="m_-218451498418335587gmail_msg">Calculating the mean inside the overdensity field is not a good idea..</div><div class="m_-218451498418335587gmail_msg"><br class="m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587gmail_msg">At this point I have the same code as before to convert from AHF to something yt understands.</div><div class="m_-218451498418335587gmail_msg">And the code for making the profiles is <a href="http://paste.yt-project.org/show/7085/" class="m_-218451498418335587gmail_msg" target="_blank">http://paste.yt-project.<wbr>org/show/7085/</a></div><div class="m_-218451498418335587gmail_msg"><br class="m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587gmail_msg">When running that code, the ouput you get is the following:</div><div class="m_-218451498418335587gmail_msg"><br class="m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587gmail_msg"><div class="m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-14 17:26:17,543 Calculating 1D profile for halo 1.</div><div class="m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-14 17:26:20,124 Calculating virial quantities for halo 1.</div><div class="m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-14 17:26:20,125 Calculating 1D profile for halo 1.</div><div class="m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-14 17:26:20,125 Skipping halo 1 since data_object is None.</div><div class="m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-14 17:26:20,125 Calculating 1D profile for halo 1.</div><div class="m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-14 17:26:20,125 Skipping halo 1 since data_object is None.</div><div class="m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-14 17:26:20,128 Calculating 1D profile for halo 2.</div><div class="m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-14 17:26:21,869 Calculating virial quantities for halo 2.</div><div class="m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-14 17:26:21,869 Calculating 1D profile for halo 2.</div><div class="m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-14 17:26:21,869 Skipping halo 2 since data_object is None.</div><div class="m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-14 17:26:21,870 Calculating 1D profile for halo 2.</div><div class="m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-14 17:26:21,870 Skipping halo 2 since data_object is None.</div><div class="m_-218451498418335587gmail_msg"><br class="m_-218451498418335587gmail_msg"></div></div><div class="m_-218451498418335587gmail_msg">So for some reason it's skipping the halos. </div><div class="m_-218451498418335587gmail_msg">I don't see why it would do that.</div><div class="m_-218451498418335587gmail_msg"><br class="m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587gmail_msg">Any ideas?</div><div class="m_-218451498418335587gmail_msg">Thanks for the great help!</div><div class="m_-218451498418335587gmail_msg"><br class="m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587gmail_msg">Best,</div><div class="m_-218451498418335587gmail_msg">Andreas Ellewsen</div><div class="m_-218451498418335587gmail_msg"><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788h5 m_-218451498418335587gmail_msg"><div class="m_-218451498418335587gmail_msg"><br class="m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587gmail_msg"><br class="m_-218451498418335587gmail_msg"><div class="gmail_quote m_-218451498418335587gmail_msg"><div dir="ltr" class="m_-218451498418335587gmail_msg">On Fri, 10 Mar 2017 at 13:30 Thor Andreas Seiff Ellewsen <<a href="mailto:tellewsen@gmail.com" class="m_-218451498418335587gmail_msg" target="_blank">tellewsen@gmail.com</a>> wrote:<br class="m_-218451498418335587gmail_msg"></div><blockquote class="gmail_quote m_-218451498418335587gmail_msg" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Hi again everyone. <div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Sorry for not getting back to you faster.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">I've tried implementing what you said Britton, and it seems to work.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">However I'm still doing something wrong.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">I'm using this script to make the halo catalog: <a href="http://paste.yt-project.org/show/7077/" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" target="_blank">http://paste.yt-project.org/<wbr>show/7077/</a><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">And this one to load the sim and the catalog, and making radial temperature profiles: <a href="http://paste.yt-project.org/show/7078/" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" target="_blank">http://paste.yt-project.org/<wbr>show/7078/</a><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">I'm simply copying the example found here: <a href="http://yt-project.org/doc/cookbook/halo_analysis_example.html#Finding-Radial-Profiles" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" target="_blank">http://yt-project.org/doc/<wbr>cookbook/halo_analysis_<wbr>example.html#Finding-Radial-<wbr>Profiles</a><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">In the example we calculate the virial radius instead of just using the one I already have in the catalog.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">I'm not sure how to use the one I already have so any tips on that is also appreciated.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Still, it is extremely slow and returns the following:</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 11:55:17,007 Calculating 1D profile for halo 1.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 12:23:13,269 Calculating virial quantities for halo 1.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 12:23:13,270 Calculating 1D profile for halo 1.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 12:23:13,270 Skipping halo 1 since data_object is None.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 12:23:13,272 Calculating 1D profile for halo 2.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 12:40:49,659 Calculating virial quantities for halo 2.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 12:40:49,660 Calculating 1D profile for halo 2.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 12:40:49,660 Skipping halo 2 since data_object is None.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 12:40:49,662 Calculating 1D profile for halo 3.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 12:46:30,547 Calculating virial quantities for halo 3.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 12:46:30,548 Calculating 1D profile for halo 3.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 12:46:30,548 Skipping halo 3 since data_object is None.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 12:46:30,550 Calculating 1D profile for halo 4.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 12:54:56,886 Calculating virial quantities for halo 4.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 12:54:56,888 Calculating 1D profile for halo 4.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 12:54:56,888 Skipping halo 4 since data_object is None.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 12:54:56,890 Calculating 1D profile for halo 5.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 13:01:48,086 Calculating virial quantities for halo 5.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 13:01:48,087 Calculating 1D profile for halo 5.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 13:01:48,087 Skipping halo 5 since data_object is None.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">yt : [INFO     ] 2017-03-10 13:01:48,089 Calculating 1D profile for halo 6.</div></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">I at this point I killed it.<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Thank you for any insight you can provide on this.<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Best,<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Andreas Ellewsen<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div></div></div><div dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="gmail_quote m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">On Fri, 3 Mar 2017 at 20:09 Britton Smith <<a href="mailto:brittonsmith@gmail.com" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" target="_blank">brittonsmith@gmail.com</a>> wrote:<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><blockquote class="gmail_quote m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Hi Andreas,<div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Ah, I think I see the problem.  It wants the halos_ds to have halo ids and masses.  If it's possible, could you add fields to your save_as_dataset script called "particle_identifier" for halo ids and "particle_mass" for masses.  If you don't have those fields specifically, you can probably just make up values.  When I fix the other issues, I'll make sure to make this a little smarter as well.</div></div><div dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Britton</div></div><div class="gmail_extra m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="gmail_quote m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">On Fri, Mar 3, 2017 at 10:46 AM, Thor Andreas Seiff Ellewsen <span dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><<a href="mailto:tellewsen@gmail.com" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" target="_blank">tellewsen@gmail.com</a>></span> wrote:<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><blockquote class="gmail_quote m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Hi again,<div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Thanks again for helping me Britton.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">That actually made a difference. Unfortunately I now get a RuntimeError from </div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">hc = HaloCatalog(data_ds=ds, halo_ds=ds_halo)</div><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">RuntimeError: HaloCatalog quantity must be a registered function or a field of a known type.<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Best,<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Andreas Ellewsen<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595h5 m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="gmail_quote m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">On Fri, 3 Mar 2017 at 19:16 Britton Smith <<a href="mailto:brittonsmith@gmail.com" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" target="_blank">brittonsmith@gmail.com</a>> wrote:<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><blockquote class="gmail_quote m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Hi Andreas,<div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">I forgot about the constraints of the naming conventions for halo catalog files.  They need to be named in the following convention:</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><prefix>.<integer>.h5</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">where the integer should start at 0.  That integer is in case your catalog is split over multiple files.  In examining the code, I can see that it counts the number of files by basically doing glob(<prefix>*h5), so if you've got a file named test.h5 and test.0.h5 in the same directory, it will fool the code into thinking there should be test.0.h5 and test.1.h5.  This is clearly a bit of a silly shortcoming of this approach, and I will submit a pull request to make this more intelligent.  In the mean time, I think you can fix this by making sure that there is only one file, test.0.h5 in the directory.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Let me know if that doesn't fix it.</div></div><div dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Britton</div></div><div class="gmail_extra m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="gmail_quote m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">On Fri, Mar 3, 2017 at 6:28 AM, Thor Andreas Seiff Ellewsen <span dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><<a href="mailto:tellewsen@gmail.com" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" target="_blank">tellewsen@gmail.com</a>></span> wrote:<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><blockquote class="gmail_quote m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Hi again.</div><div dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Thank for helping me Britton!</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">I think I've gotten the halo catalog saved to file now, but I'm having problems loading it using HaloCatalog.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">I've used the code you provided, and everything seems to be going fine until I try loading the catalog.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">If I try this:</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">save_as_dataset(ds,'test.h5', data, field_types=ftypes, extra_attrs=extra_attrs)</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">ds_halo = load('test.h5')<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">hc = HaloCatalog(data_ds=ds, halos_ds=ds_halo)<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">This returns</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">IOError: Unable to open file (Unable to open file: name = '.0.h5', errno = 2, error message = 'no such file or directory', flags = 0, o_flags = 0)<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">I tried using </div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">save_as_dataset(ds,'test.0.h5'<wbr>, data, field_types=ftypes, extra_attrs=extra_attrs)<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">ds_halo = load('test.0.h5')</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">hc = HaloCatalog(data_ds=ds, halos_ds=ds_halo)</div></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">instead, but then I get<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">IOError: Unable to open file (Unable to open file: name = 'test.1.h5', errno = 2, error message = 'no such file or directory', flags = 0, o_flags = 0)</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">It seems it's trying to open more than one file for some reason?</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Did I misunderstand something?</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">I've uploaded the code again to <a href="http://paste.yt-project.org/show/7062/" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" target="_blank">http://paste.yt-project.<wbr>org/show/7062/</a></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Best,</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Andreas Ellewsen</div></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409h5 m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="gmail_quote m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">On Thu, 2 Mar 2017 at 19:37 Britton Smith <<a href="mailto:brittonsmith@gmail.com" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" target="_blank">brittonsmith@gmail.com</a>> wrote:<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><blockquote class="gmail_quote m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Hi Andreas,<div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">I think all this can be done very cleanly using yt's halo analysis toolkit.  I'd be happy to help you with this.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Documentation for the halo analysis, also called the HaloCatalog, is here:</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><a href="http://yt-project.org/docs/dev/analyzing/analysis_modules/halo_catalogs.html#halo-catalog-analysis" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" target="_blank">http://yt-project.org/docs/<wbr>dev/analyzing/analysis_<wbr>modules/halo_catalogs.html#<wbr>halo-catalog-analysis</a><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">The HaloCatalog works with the simulation snapshot and the halo finder output in tandem to run a pipeline of analysis that you define.  yt comes with a number of functions out of the box for doing profiling, etc, including scaling of profiles to r_vir.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Before that, you will need to convert your halo finder output into a form that yt can read in using yt.load.  This should be relatively straightforward.  I've sketched out how to do this here:</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><a href="http://paste.yt-project.org/show/7061/" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" target="_blank">http://paste.yt-project.org/<wbr>show/7061/</a><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">The code snippet there assumes some of the variables you've got in the script you posted.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">There may be some hiccups still, but I'm happy to work with you to get it going.  Once that works, you should be able to use the HaloCatalog as documented to do the rest, but feel free to ask any other questions you might have.</div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_12515111724840267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79040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" target="_blank">tellewsen@gmail.com</a>></span> wrote:<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div></div><div class="gmail_extra m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="gmail_quote m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><blockquote class="gmail_quote m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Hi everyone.<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div>I'm currently working on making temperature and density profiles from some ramses simulations.<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">I'd like to make these profiles the average radial profile of the halos in the simulation.<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">I think the included rockstar in yt supports this in some form, but my halo catalog is made using AHF and then imported from an ascii file.<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">To do this I need help with two things:<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">The first one is how to scale the radius of each profile to the corresponding virial radius.<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">The other is how to actually average all these profiles.<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Is this something that can be done?<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">I will be trying to compare the resulting profile with the same for different simulations in the end, but I don't expect to have any big problems with that.<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">The code I'm currently using for this can be found at <br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><a href="http://paste.yt-project.org/show/7058/" class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" target="_blank">http://paste.yt-project.org/<wbr>show/7058/</a><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Best,<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div><div class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">Andreas Ellewsen<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div></div>
<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></blockquote></div></div><div class="gmail_extra m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><div class="gmail_quote m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"><blockquote class="gmail_quote m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">______________________________<wbr>_________________<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">
yt-users mailing list<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">
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<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></blockquote></div><br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg"></div>
______________________________<wbr>_________________<br class="m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085m_4207535260054391558m_-3552537250508506409m_7109324586509489322gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799m_3283263095861685022m_3711938124692402432m_39738510565725595m_1637550399533872085gmail_msg m_-218451498418335587m_8333244822300970011m_3679040768205778788m_1251511172484026799gmail_msg m_-218451498418335587gmail_msg">
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