<div dir="ltr"><div class="gmail_extra"><div class="gmail_default" style="font-family:arial,helvetica,sans-serif;font-size:small">Hi Nathan,</div><div class="gmail_default" style="font-family:arial,helvetica,sans-serif;font-size:small"><br></div><div class="gmail_default" style="font-family:arial,helvetica,sans-serif;font-size:small">Thanks for your response. I downgraded back to yt 3.2.3 so that I could get my work done, so I at the moment, I can't explore the grid hierarchy with yt 3.3.3. I'm happy to share my dataset with you. I'll upload it to the curldrop site.</div><div class="gmail_default" style="font-family:arial,helvetica,sans-serif;font-size:small"><br></div><div class="gmail_default" style="font-family:arial,helvetica,sans-serif;font-size:small">Regards,</div><div class="gmail_default" style="font-family:arial,helvetica,sans-serif;font-size:small">Jon</div><br><div class="gmail_quote">On Tue, Jan 24, 2017 at 7:31 PM, <span dir="ltr"><<a href="mailto:yt-users-request@lists.spacepope.org" target="_blank">yt-users-request@lists.spacepope.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div id=":u3" class="a3s aXjCH m159d3094a9f2d630">Hi Jonathan,<br>
<br>
I just tried this using WDMerger_hdf5_chk_1000 (see <a href="http://yt-project.org/data" rel="noreferrer" target="_blank">yt-project.org/data</a>),<br>
which is a FLASH dataset from a simulation done in cylindrical coordinates,<br>
but it seems to work for me ok using that dataset:<br>
<br>
$ yt load WDMerger_hdf5_chk_1000/<wbr>WDMerger_hdf5_chk_1000.hdf5<br>
<br>
In [1]: slc = ds.slice(2, 0.)<br>
<br>
In [2]: slc['dr'].min()<br>
Out[2]: 25600000.0 code_length<br>
<br>
Somehow something is getting set to a NaN, my guess is gobj.LeftEdge[i]. In<br>
this context gobj is a grid object, so for some reason grid.LeftEdge is NaN<br>
along one of your axes for at least one of your grids. You can navigate the<br>
grid hierarchy by looking at the grid array: ds.index.grids[0] should be a<br>
reference to the root grid. You can also just iterate over ds.index.grids<br>
to look at all the grids in your dataset.<br>
<br>
Is there any chance you can share the dataset that's causing this issue? We<br>
have the yt curldrop (<a href="https://docs.hub.yt/services.html#curldrop" rel="noreferrer" target="_blank">https://docs.hub.yt/services.<wbr>html#curldrop</a>) available<br>
for sharing data publicly. If it's not ok to share the dataset publicly we<br>
can try sharing it off-list.<br>
<br>
-Nathan</div></blockquote></div><br><br><br clear="all"><div><br></div>-- <br><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr">________________________________________________________<br>Jonathan D. Slavin Harvard-Smithsonian CfA<br><a href="mailto:jslavin@cfa.harvard.edu" target="_blank">jslavin@cfa.harvard.edu</a> 60 Garden Street, MS 83<br>phone: (617) 496-7981 Cambridge, MA 02138-1516<br>cell: (781) 363-0035 USA<br>________________________________________________________<br><br></div></div></div></div>
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