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Hi folks,
<div><br>
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<div>I’m trying to construct and save a 2d profile container to make a phase plot. Here’s what I have:</div>
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<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
nhT_prof_new = yt.create_profile(sph, [('gas', 'H_number_density'),('gas','temperature')], fields='cell_mass', extrema=extrema,fractional=True, n_bins=6)</p>
</div>
<div>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
nhT_prof_new.save_as_dataset()</p>
</div>
<div>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
prof_ds = yt.load("snap_047_z000p000_Profile2D.h5")</p>
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<div><br>
</div>
<div>(just using a small number of bins for now to play with…)</div>
<div><br>
</div>
<div>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #35a327">In [</span><span style="color: #2de621">115</span><span style="color: #35a327">]:
</span>prof_ds.data[<span style="color: #ce7924">"temperature"</span>]</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(206, 121, 36); background-color: rgb(0, 0, 0);">
<span style="color: #35a327"> ...: </span><span style="color: #f5f5f5">prof_ds.data[</span>"H_number_density"<span style="color: #f5f5f5">]</span></p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #35a327"> ...: </span>prof_ds.data[<span style="color: #ce7924">"cell_mass"</span>]</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(53, 163, 39); background-color: rgb(0, 0, 0);">
...: </p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(178, 54, 34); background-color: rgb(0, 0, 0);">
Out[<span style="color: #ff3b1d">115</span>]: </p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
YTArray([[ 0.01685665, 0.0405085 , 0.03575519, 0.03091732, 0.02552936,</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
0.0230379 ],</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
[ 0.03770747, 0.05441198, 0.04859202, 0.03285325, 0.02385346,</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
0.04674817],</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
[ 0.03022001, 0.05150457, 0.03591368, 0.01974481, 0.01052408,</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
0.00331175],</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
[ 0.04278126, 0.01889035, 0.0177686 , 0.01644028, 0.01598129,</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
0.00578262],</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
[ 0.05010083, 0.06573628, 0.04247398, 0.03914208, 0. ,</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
0. ],</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
[ 0. , 0.11691224, 0. , 0. , 0. ,</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
0. ]]) dimensionless</p>
</div>
<div><br>
</div>
<div>but when I try to create a PhasePlot:</div>
<div>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #35a327">In [</span><span style="color: #2de621">116</span><span style="color: #35a327">]:
</span>p = yt.PhasePlot(prof_ds.data, <span style="color: #ce7924">"H_number_density"</span>,
<span style="color: #ce7924">"temperature"</span>,<span style="color: #ce7924">"cell_mass"</span>,weight_field=<span style="color: #35a327">None</span>)</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(53, 163, 39); background-color: rgb(0, 0, 0);">
...: </p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(195, 55, 32); background-color: rgb(0, 0, 0);">
---------------------------------------------------------------------------</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #c33720">KeyError</span> Traceback (most recent call last)</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(52, 189, 38); background-color: rgb(0, 0, 0);">
<ipython-input-116-37b81d75b563><span style="color: #f5f5f5"> in </span><span style="color: #34bbc7"><module></span><span style="color: #5330e1">()</span></p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(83, 48, 225); background-color: rgb(0, 0, 0);">
<span style="color: #34bd26">----> 1</span><span style="color: #c33720"> </span><span style="color: #f5f5f5">p
</span>=<span style="color: #f5f5f5"> yt</span>.<span style="color: #f5f5f5">PhasePlot</span>(<span style="color: #f5f5f5">prof_ds</span>.<span style="color: #f5f5f5">data</span>,<span style="color: #f5f5f5">
</span>"H_number_density",<span style="color: #f5f5f5"> </span>"temperature","cell_mass",<span style="color: #f5f5f5">weight_field</span>=<span style="color: #f5f5f5">None</span>)</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0); min-height: 14px;">
<br>
</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(83, 48, 225); background-color: rgb(0, 0, 0);">
<span style="color: #34bd26">/Users/molly/anaconda2/envs/astroconda/lib/python2.7/site-packages/yt/visualization/profile_plotter.pyc</span><span style="color: #f5f5f5"> in
</span><span style="color: #34bbc7">__init__</span>(self, data_source, x_field, y_field, z_fields, weight_field, x_bins, y_bins, accumulation, fractional, fontsize, figure_size)</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(45, 230, 33); background-color: rgb(0, 0, 0);">
756<span style="color: #f5f5f5"> </span></p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #2de621"> 757</span> type(self)._initialize_instance(self, data_source, profile, fontsize,</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(195, 55, 32); background-color: rgb(0, 0, 0);">
<span style="color: #34bd26">--> 758</span> figure_size)</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(45, 230, 33); background-color: rgb(0, 0, 0);">
759<span style="color: #f5f5f5"> </span></p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #2de621"> 760</span> <span style="color: #5330e1">@</span>classmethod</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0); min-height: 14px;">
<br>
</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(52, 189, 38); background-color: rgb(0, 0, 0);">
/Users/molly/anaconda2/envs/astroconda/lib/python2.7/site-packages/yt/visualization/profile_plotter.pyc<span style="color: #f5f5f5"> in
</span><span style="color: #34bbc7">_initialize_instance</span><span style="color: #5330e1">(cls, obj, data_source, profile, fontsize, figure_size)</span></p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #2de621"> 773</span> obj<span style="color: #5330e1">.</span>profile
<span style="color: #5330e1">=</span> profile</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #2de621"> 774</span> super<span style="color: #5330e1">(</span>PhasePlot<span style="color: #5330e1">,</span> obj<span style="color: #5330e1">).</span>__init__<span style="color: #5330e1">(</span>data_source<span style="color: #5330e1">,</span>
figure_size<span style="color: #5330e1">,</span> fontsize<span style="color: #5330e1">)</span></p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #34bd26">--> 775</span><span style="color: #c33720"> </span>
obj<span style="color: #5330e1">.</span>_setup_plots<span style="color: #5330e1">()</span></p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #2de621"> 776</span> obj<span style="color: #5330e1">.</span>_initfinished
<span style="color: #5330e1">=</span> True</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #2de621"> 777</span> <span style="color: #34bd26">
return</span> obj</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0); min-height: 14px;">
<br>
</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(52, 189, 38); background-color: rgb(0, 0, 0);">
/Users/molly/anaconda2/envs/astroconda/lib/python2.7/site-packages/yt/visualization/profile_plotter.pyc<span style="color: #f5f5f5"> in
</span><span style="color: #34bbc7">_setup_plots</span><span style="color: #5330e1">(self)</span></p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #2de621"> 854</span> cax <span style="color: #5330e1">
=</span> self<span style="color: #5330e1">.</span>plots<span style="color: #5330e1">[</span>f<span style="color: #5330e1">].</span>cax</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(45, 230, 33); background-color: rgb(0, 0, 0);">
855<span style="color: #f5f5f5"> </span></p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #34bd26">--> 856</span><span style="color: #c33720">
</span>x_scale<span style="color: #5330e1">,</span> y_scale<span style="color: #5330e1">,</span> z_scale
<span style="color: #5330e1">=</span> self<span style="color: #5330e1">.</span>_get_field_log<span style="color: #5330e1">(</span>f<span style="color: #5330e1">,</span> self<span style="color: #5330e1">.</span>profile<span style="color: #5330e1">)</span></p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #2de621"> 857</span> x_title<span style="color: #5330e1">,</span> y_title<span style="color: #5330e1">,</span> z_title
<span style="color: #5330e1">=</span> self<span style="color: #5330e1">.</span>_get_field_title<span style="color: #5330e1">(</span>f<span style="color: #5330e1">,</span> self<span style="color: #5330e1">.</span>profile<span style="color: #5330e1">)</span></p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(45, 230, 33); background-color: rgb(0, 0, 0);">
858<span style="color: #f5f5f5"> </span></p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0); min-height: 14px;">
<br>
</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(52, 189, 38); background-color: rgb(0, 0, 0);">
/Users/molly/anaconda2/envs/astroconda/lib/python2.7/site-packages/yt/visualization/profile_plotter.pyc<span style="color: #f5f5f5"> in
</span><span style="color: #34bbc7">_get_field_log</span><span style="color: #5330e1">(self, field_z, profile)</span></p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(45, 230, 33); background-color: rgb(0, 0, 0);">
813<span style="color: #f5f5f5"> </span></p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #2de621"> 814</span> <span style="color: #34bd26">def</span> _get_field_log<span style="color: #5330e1">(</span>self<span style="color: #5330e1">,</span> field_z<span style="color: #5330e1">,</span> profile<span style="color: #5330e1">):</span></p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #34bd26">--> 815</span><span style="color: #c33720"> </span>
zfi <span style="color: #5330e1">=</span> profile<span style="color: #5330e1">.</span>field_info<span style="color: #5330e1">[</span>field_z<span style="color: #5330e1">]</span></p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #2de621"> 816</span> <span style="color: #34bd26">
if</span> self<span style="color: #5330e1">.</span>x_log <span style="color: #34bd26">
is</span> None<span style="color: #5330e1">:</span></p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #2de621"> 817</span> x_log <span style="color: #5330e1">
=</span> profile<span style="color: #5330e1">.</span>x_log</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0); min-height: 14px;">
<br>
</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);">
<span style="color: #c33720">KeyError</span>: ('data', 'cell_mass')</p>
<p style="margin: 0px; font-size: 10px; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0); min-height: 14px;">
<br>
</p>
</div>
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</div>
<div><br>
</div>
<div>Suggestions?</div>
<div>—Molly</div>
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