<div dir="ltr">and I did <br><div><br></div><div><div style="font-size:12.8px">$ cd /work/03858/thaque56/sw/yt-3.1<wbr>/yt-x86_64/src/yt-hg/</div><div style="font-size:12.8px">$ hg --config extensions.purge= purge --all yt</div><div style="font-size:12.8px">$ hg pull <a href="https://bitbucket.org/yt_analysis/yt" target="_blank">https://bitbucket.org/yt_<wbr>analysis/yt</a></div><div style="font-size:12.8px">$ hg update stable</div><div style="font-size:12.8px">$ python setup.py develop</div></div></div><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Aug 26, 2016 at 12:25 AM, tazkera haque <span dir="ltr"><<a href="mailto:h.tazkera@gmail.com" target="_blank">h.tazkera@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr">HI Nathan ,<div><br></div><div>Thanks for your help but now it gives me a whole bunch of errors:</div><div><br></div><div><div>(yt-x86_64)login2.stampede(6)$ python setup.py develop</div><div>Unable to find pgen, not compiling formal grammar.</div><span class=""><div>Traceback (most recent call last):</div></span><div> File "setup.py", line 391, in <module></div><div> ext_modules=cython_extensions + extensions,</div><div> File "/work/03858/thaque56/sw/yt-3.<wbr>1/yt-x86_64/lib/python2.7/<wbr>distutils/core.py", line 111, in setup</div><div> _setup_distribution = dist = klass(attrs)</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/dist.py", line 268, in __init__</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/dist.py", line 313, in fetch_build_eggs</div><div> File "build/bdist.linux-x86_64/egg/<wbr>pkg_resources/__init__.py", line 836, in resolve</div><div> </div><div> File "build/bdist.linux-x86_64/egg/<wbr>pkg_resources/__init__.py", line 1081, in best_match</div><div> </div><div> File "build/bdist.linux-x86_64/egg/<wbr>pkg_resources/__init__.py", line 1093, in obtain</div><div> </div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/dist.py", line 380, in fetch_build_egg</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/command/easy_<wbr>install.py", line 629, in easy_install</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/command/easy_<wbr>install.py", line 659, in install_item</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/command/easy_<wbr>install.py", line 842, in install_eggs</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/command/easy_<wbr>install.py", line 1070, in build_and_install</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/command/easy_<wbr>install.py", line 1056, in run_setup</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 240, in run_setup</div><div> File "/work/03858/thaque56/sw/yt-3.<wbr>1/yt-x86_64/lib/python2.7/<wbr>contextlib.py", line 35, in __exit__</div><div> self.gen.throw(type, value, traceback)</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 193, in setup_context</div><div> File "/work/03858/thaque56/sw/yt-3.<wbr>1/yt-x86_64/lib/python2.7/<wbr>contextlib.py", line 35, in __exit__</div><div> self.gen.throw(type, value, traceback)</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 152, in save_modules</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 126, in __exit__</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div> File "build/bdist.linux-x86_64/egg/<wbr>setuptools/sandbox.py", line 110, in dump</div><div>MemoryError</div></div><span class="HOEnZb"><font color="#888888"><div><br></div><div><br></div><div>Tazkera</div></font></span></div><div class="HOEnZb"><div class="h5"><div class="gmail_extra"><br><div class="gmail_quote">On Thu, Aug 25, 2016 at 11:51 PM, Nathan Goldbaum <span dir="ltr"><<a href="mailto:nathan12343@gmail.com" target="_blank">nathan12343@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><br><div class="gmail_extra"><br><div class="gmail_quote"><span>On Thu, Aug 25, 2016 at 9:49 PM, tazkera haque <span dir="ltr"><<a href="mailto:h.tazkera@gmail.com" target="_blank">h.tazkera@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><div dir="ltr"><div><div><div>Hi people, <br><br></div>I would like to upgrade yt to the latest version, I tried typing <b>yt update </b>in a folder on cluster /work/03858/thaque56/sw/yt-3.1 and it gives me following error:<br><br>Traceback (most recent call last):<br> File "/work/03858/thaque56/sw/yt-3.<wbr>1/yt-x86_64/bin/yt", line 9, in <module><br> load_entry_point('yt==3.2.3', 'console_scripts', 'yt')()<br> File "build/bdist.linux-x86_64/egg/<wbr>pkg_resources/__init__.py", line 558, in load_entry_point<br> <br> File "build/bdist.linux-x86_64/egg/<wbr>pkg_resources/__init__.py", line 2682, in load_entry_point<br> <br> File "build/bdist.linux-x86_64/egg/<wbr>pkg_resources/__init__.py", line 2355, in load<br> <br> File "build/bdist.linux-x86_64/egg/<wbr>pkg_resources/__init__.py", line 2361, in resolve<br> <br> File "/work/03858/thaque56/sw/yt-3.<wbr>1/yt-x86_64/src/yt-hg/yt/__ini<wbr>t__.py", line 123, in <module><br> from yt.data_objects.api import \<br> File "/work/03858/thaque56/sw/yt-3.<wbr>1/yt-x86_64/src/yt-hg/yt/data_<wbr>objects/api.py", line 16, in <module><br> from .grid_patch import \<br> File "/work/03858/thaque56/sw/yt-3.<wbr>1/yt-x86_64/src/yt-hg/yt/data_<wbr>objects/grid_patch.py", line 19, in <module><br> from yt.data_objects.data_container<wbr>s import \<br> File "/work/03858/thaque56/sw/yt-3.<wbr>1/yt-x86_64/src/yt-hg/yt/data_<wbr>objects/data_containers.py", line 55, in <module><br> from <a href="http://yt.utilities.parallel_tools.pa" target="_blank">yt.utilities.parallel_tools.pa</a><wbr>rallel_analysis_interface import \<br> File "/work/03858/thaque56/sw/yt-3.<wbr>1/yt-x86_64/src/yt-hg/yt/utili<wbr>ties/parallel_tools/parallel_a<wbr>nalysis_interface.py", line 33, in <module><br> from yt.utilities.lib.quad_tree import \<br>ImportError: No module named quad_tree<br><br></div></div></div></blockquote><div><br></div></span><div>$ cd /work/03858/thaque56/sw/yt-3.1<wbr>/yt-x86_64/src/yt-hg/</div><div>$ hg --config extensions.purge= purge --all yt</div><div>$ hg pull <a href="https://bitbucket.org/yt_analysis/yt" target="_blank">https://bitbucket.org/yt_analy<wbr>sis/yt</a></div><div>$ hg update yt</div><div>$ python setup.py develop</div><div> </div><div>This will put you on the latest in-development version of yt. If you'd instead like to be on the last stable release, do "hg update stable" instead of "hg update yt".</div><div><br></div><div>"yt update" is supposed to automate this, but something seems to have gone wrong in your case. I'm not sure why.</div><div><br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex"><span><div dir="ltr"><div><div><br></div>and now I cannot excecute any of my python scripts there, please help me upgrade and fix the problem. thanks<span><font color="#888888"><br><br></font></span></div><span><font color="#888888">Tazkera<br></font></span></div>
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