<div dir="ltr"><div><div><div><div>Hi John, <br><br></div>Thanks for the idea and sounds like a quick fix for now, I will do that.<br><br></div>and our particle files are more frequent than plotfiles, so when there are 50 plt-files there might be 100 part files at that time step. <br><br></div>Best<br></div>Tazkera <br></div><div class="gmail_extra"><br><div class="gmail_quote">On Fri, Aug 26, 2016 at 3:06 PM, John ZuHone <span dir="ltr"><<a href="mailto:jzuhone@gmail.com" target="_blank">jzuhone@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div style="word-wrap:break-word">Hi Tazkera,<div><br></div><div>It looks like you _don’t_ want the particle files to be loaded, correct? </div><div><br></div><div>This will probably require a fix to the code to make sure that this doesn’t happen automatically, but in the meantime you could create a folder for the particle files and simply move them in there. This is very hacky, but it will get the job done right now while you wait for a fix (which I’ll try to set up today, but may take several days to get merged into the main branch). </div><div><br></div><div>How far off are the times in the particle files and plot files?</div><div><br></div><div>Best,</div><div><br></div><div>John</div><div><br></div><div><div><blockquote type="cite"><div><div class="h5"><div>On Aug 26, 2016, at 1:40 PM, tazkera haque <<a href="mailto:h.tazkera@gmail.com" target="_blank">h.tazkera@gmail.com</a>> wrote:</div><br></div></div><div><div><div class="h5"><div dir="ltr">Hi Nathan, <div><br></div><div>I have just updated yt 3.3 and now I have this weird issue with the scripts , I am uploading my script for sliceplots, which should just analyse the super3d_hdf5_plt_cnt files but I have got issues which also pulls up the super3d_hdf5_part files which are also located in the same path and produces the error.</div><div><br></div><div><div><b>yt : [INFO ] 2016-08-26 13:23:36,817 Particle file found: super3d_hdf5_part_0000</b></div><div><b>yt : [INFO ] 2016-08-26 13:23:36,840 integer runtime parameter checkpointfilenumber overwrites a simulation scalar of the same name</b></div><div><b>yt : [INFO ] 2016-08-26 13:23:36,862 Parameters: current_time = 0.0</b></div><div><b>yt : [INFO ] 2016-08-26 13:23:36,862 Parameters: domain_dimensions = [128 128 128]</b></div><div><b>yt : [INFO ] 2016-08-26 13:23:36,863 Parameters: domain_left_edge = [ -2.80000000e+10 -2.80000000e+10 -2.80000000e+10]</b></div><div><b>yt : [INFO ] 2016-08-26 13:23:36,863 Parameters: domain_right_edge = [ 2.80000000e+10 2.80000000e+10 2.80000000e+10]</b></div><div><b>yt : [INFO ] 2016-08-26 13:23:36,864 Parameters: cosmological_simulation = 0.0</b></div><div><b>yt : [INFO ] 2016-08-26 13:23:38,500 xlim = -28000000000.000000 28000000000.000000</b></div><div><b>yt : [INFO ] 2016-08-26 13:23:38,500 ylim = -28000000000.000000 28000000000.000000</b></div><div><b>yt : [INFO ] 2016-08-26 13:23:38,501 xlim = -28000000000.000000 28000000000.000000</b></div><div><b>yt : [INFO ] 2016-08-26 13:23:38,501 ylim = -28000000000.000000 28000000000.000000</b></div><div><b>yt : [INFO ] 2016-08-26 13:23:38,502 Making a fixed resolution buffer of (('flash', 'temp')) 800 by 800</b></div><div><b>yt : [INFO ] 2016-08-26 13:23:39,016 Making a fixed resolution buffer of (('flash', 'temp')) 800 by 800</b></div><div><b>yt : [INFO ] 2016-08-26 13:23:39,252 Saving plot Slice_z_temp/super3d_hdf5_plt_<wbr>cnt_0000_Slice_z_temp.png</b></div><div><b>yt : [INFO ] 2016-08-26 13:23:39,885 Particle file found: super3d_hdf5_part_0001</b></div><div><b>Traceback (most recent call last):</b></div><div><b> File "allSlices.py", line 115, in <module></b></div><div><b> ds=yt.load(filename)</b></div><div><b> File "/work/03858/thaque56/sw/yt-<wbr>new-3.3/yt-conda/lib/python2.<wbr>7/site-packages/yt/<wbr>convenience.py", line 86, in load</b></div><div><b> return candidates[0](*args, **kwargs)</b></div><div><b> File "/work/03858/thaque56/sw/yt-<wbr>new-3.3/yt-conda/lib/python2.<wbr>7/site-packages/yt/frontends/<wbr>flash/data_structures.py", line 215, in __init__</b></div><div><b> raise IOError('%s and %s are not at the same time.' % (self.particle_filename, filename))</b></div><div><b>IOError: /work/03858/thaque56/runs/run_<wbr>176/super3d_hdf5_part_0001 and /work/03858/thaque56/runs/<wbr>run_176/super3d_hdf5_plt_cnt_<wbr>0001 are not at the same time.</b></div><div><b>[<a href="http://c558-502.stampede.tacc.utexas.edu" target="_blank">c558-502.stampede.tacc.<wbr>utexas.edu</a>:mpispawn_0][child_<wbr>handler] MPI process (rank: 0, pid: 13788) exited with status 1</b></div><div><b>TACC: MPI job exited with code: 1</b></div><div><b><br></b></div><div>Please take a look at the error and let me know how to avoid the particle files in this circumstance.</div><div><br></div><div>Best</div><div>Tazkera</div><div><br></div></div></div>
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