<div dir="ltr"><div>Dear Nathan:<br><br></div>I am still getting the same error and the changes. <br><div><br><a href="https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc">https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc</a><br><div><div><div class="gmail_extra"><br>/state/partition1/anaconda/lib/python2.7/site-packages/numpy/lib/nanfunctions.py:338: RuntimeWarning: All-NaN axis encountered<br> warnings.warn("All-NaN axis encountered", RuntimeWarning)<br>/state/partition1/anaconda/lib/python2.7/site-packages/numpy/lib/nanfunctions.py:239: RuntimeWarning: All-NaN axis encountered<br> warnings.warn("All-NaN axis encountered", RuntimeWarning)<br>yt : [WARNING ] 2016-08-18 13:45:25,092 Plot image for field ('gas', 'cutting_plane_velocity_x') is filled with NaNs.<br>yt : [WARNING ] 2016-08-18 13:45:25,092 Switching to linear colorbar scaling.<br>Traceback (most recent call last):<br> File "yt_frb_streamplot.py", line 66, in <module><br> plt.streamplot(X, Y, np.array(U), np.array(V), density=2,color='blue')<br> File "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/pyplot.py", line 3339, in streamplot<br> zorder=zorder)<br> File "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/axes/_axes.py", line 4204, in streamplot<br> zorder=zorder)<br> File "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/streamplot.py", line 74, in streamplot<br> grid = Grid(x, y)<br> File "/state/partition1/anaconda/lib/python2.7/site-packages/matplotlib/streamplot.py", line 261, in __init__<br> assert np.allclose(x_row, x)<br> File "/state/partition1/anaconda/lib/python2.7/site-packages/numpy/core/numeric.py", line 2372, in allclose<br> res = all(isclose(a, b, rtol=rtol, atol=atol, equal_nan=equal_nan))<br> File "/state/partition1/anaconda/lib/python2.7/site-packages/numpy/core/numeric.py", line 2453, in isclose<br> return within_tol(x, y, atol, rtol)<br> File "/state/partition1/anaconda/lib/python2.7/site-packages/numpy/core/numeric.py", line 2436, in within_tol<br> result = less_equal(abs(x-y), atol + rtol * abs(y))<br> File "/state/partition1/anaconda/lib/python2.7/site-packages/yt/units/yt_array.py", line 732, in __radd__<br> lo = sanitize_units_add(self, left_object, "addition")<br> File "/state/partition1/anaconda/lib/python2.7/site-packages/yt/units/yt_array.py", line 134, in sanitize_units_add<br> raise YTUnitOperationError(op_string, inp.units, dimensionless)<br>yt.utilities.exceptions.YTUnitOperationError: The addition operator for YTArrays with units (km) and (1) is not well defined.<br><br><br><br><br><br><div class="gmail_quote">On Thu, Aug 18, 2016 at 1:11 PM, <span dir="ltr"><<a href="mailto:yt-users-request@lists.spacepope.org" target="_blank">yt-users-request@lists.<wbr>spacepope.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Send yt-users mailing list submissions to<br>
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Today's Topics:<br>
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1. Streamplot error (Sushilkumar)<br>
2. Re: Streamplot error (Nathan Goldbaum)<br>
<br>
<br>
------------------------------<wbr>------------------------------<wbr>----------<br>
<br>
Message: 1<br>
Date: Thu, 18 Aug 2016 13:03:05 -0500<br>
From: Sushilkumar <<a href="mailto:sushil.sush19us@gmail.com" target="_blank">sushil.sush19us@gmail.com</a>><br>
To: Discussion of the yt analysis package<br>
<<a href="mailto:yt-users@lists.spacepope.org" target="_blank">yt-users@lists.spacepope.org</a>><br>
Subject: [yt-users] Streamplot error<br>
Message-ID:<br>
<CAKARaKVO083ut=_zq1rWgbbuJu5q<wbr>X0GG=<a href="mailto:2WORSuX99a5FxzY%2BQ@mail.gmail.com" target="_blank">2WORSuX99a5FxzY+Q@mail.<wbr>gmail.com</a>><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
Dear yt:<br>
<br>
I am getting the error as below while plotting streamplots. Could you let<br>
me know what is causing this problem? drive link to my code<br>
(yt_frb_streamplot.py) is also below.<br>
<br>
<a href="https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc" rel="noreferrer" target="_blank">https://drive.google.com/open?<wbr>id=0B4g8shg4DL7oak5PLWVVdG5UMH<wbr>c</a><br>
<br>
Traceback (most recent call last):<br>
File "yt_frb_streamplot.py", line 67, in <module><br>
plt.streamplot(X, Y, U, V, density=2,color='blue') # Here density<br>
adjusts the density of streamlines<br>
File<br>
"/state/partition1/anaconda/li<wbr>b/python2.7/site-packages/matp<wbr>lotlib/pyplot.py",<br>
line 3339, in streamplot<br>
zorder=zorder)<br>
File<br>
"/state/partition1/anaconda/li<wbr>b/python2.7/site-packages/matp<wbr>lotlib/axes/_axes.py",<br>
line 4204, in streamplot<br>
zorder=zorder)<br>
File<br>
"/state/partition1/anaconda/li<wbr>b/python2.7/site-packages/matp<wbr>lotlib/streamplot.py",<br>
line 74, in streamplot<br>
grid = Grid(x, y)<br>
File<br>
"/state/partition1/anaconda/li<wbr>b/python2.7/site-packages/matp<wbr>lotlib/streamplot.py",<br>
line 261, in __init__<br>
assert np.allclose(x_row, x)<br>
File<br>
"/state/partition1/anaconda/li<wbr>b/python2.7/site-packages/nump<wbr>y/core/numeric.py",<br>
line 2372, in allclose<br>
res = all(isclose(a, b, rtol=rtol, atol=atol, equal_nan=equal_nan))<br>
File<br>
"/state/partition1/anaconda/li<wbr>b/python2.7/site-packages/nump<wbr>y/core/numeric.py",<br>
line 2453, in isclose<br>
return within_tol(x, y, atol, rtol)<br>
File<br>
"/state/partition1/anaconda/li<wbr>b/python2.7/site-packages/nump<wbr>y/core/numeric.py",<br>
line 2436, in within_tol<br>
result = less_equal(abs(x-y), atol + rtol * abs(y))<br>
File<br>
"/state/partition1/anaconda/li<wbr>b/python2.7/site-packages/yt/<wbr>units/yt_array.py",<br>
line 732, in __radd__<br>
lo = sanitize_units_add(self, left_object, "addition")<br>
File<br>
"/state/partition1/anaconda/li<wbr>b/python2.7/site-packages/yt/<wbr>units/yt_array.py",<br>
line 134, in sanitize_units_add<br>
raise YTUnitOperationError(op_string<wbr>, inp.units, dimensionless)<br>
yt.utilities.exceptions.YTUnit<wbr>OperationError: The addition operator for<br>
YTArrays with units (km) and (1) is not well defined.<br>
<br>
<br>
<br>
<br>
<br>
<br>
On Tue, Aug 16, 2016 at 1:00 PM, <<a href="mailto:yt-users-request@lists.spacepope.org" target="_blank">yt-users-request@lists.spacep<wbr>ope.org</a>><br>
wrote:<br>
<br>
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> or, via email, send a message with subject or body 'help' to<br>
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> 1. Re: conda install (John Regan)<br>
><br>
><br>
> ------------------------------<wbr>------------------------------<wbr>----------<br>
><br>
> Message: 1<br>
> Date: Tue, 16 Aug 2016 15:34:48 +0100<br>
> From: John Regan <<a href="mailto:johnanthonyregan@gmail.com" target="_blank">johnanthonyregan@gmail.com</a>><br>
> To: Discussion of the yt analysis package<br>
> <<a href="mailto:yt-users@lists.spacepope.org" target="_blank">yt-users@lists.spacepope.org</a><wbr>><br>
> Subject: Re: [yt-users] conda install<br>
> Message-ID:<br>
> <CABzd+TFisnpj44UZ3NUQ4HnEHNA<wbr>uS_iQR+LzM2YRU_a9DntX=Q@mail.<wbr>gmail.<br>
> com><br>
> Content-Type: text/plain; charset="utf-8"<br>
><br>
> perfect - thanks Nathan!<br>
><br>
> On Mon, Aug 15, 2016 at 5:20 PM, Nathan Goldbaum <<a href="mailto:nathan12343@gmail.com" target="_blank">nathan12343@gmail.com</a>><br>
> wrote:<br>
><br>
> ><br>
> ><br>
> > On Mon, Aug 15, 2016 at 11:18 AM, John Regan <<a href="mailto:johnanthonyregan@gmail.com" target="_blank">johnanthonyregan@gmail.com</a><br>
> ><br>
> > wrote:<br>
> ><br>
> >> Hi All,<br>
> >><br>
> >> Quick question on the conda install system.<br>
> >><br>
> >> I'm sure this is very easy but when I update the source folder e.g.<br>
> >> ~/ytfork/yt/analysis_modules/.<wbr>....<br>
> >> how do I then get that reflected in the yt-conda installation e.g. in<br>
> >> ~/ytfork/doc/yt-conda/lib/.../<wbr>analysis_modules?<br>
> >><br>
> >> I could copy the "source" files directly into the "lib" directory but<br>
> I'm<br>
> >> guessing there is a better way?<br>
> >><br>
> ><br>
> > $ conda uninstall yt<br>
> > $ pip uninstall yt<br>
> > $ cd ~/ytfork/<br>
> > $ python setup.py develop<br>
> ><br>
> > And now ~/ytfork/ will be the "active" installation.<br>
> ><br>
> ><br>
> >><br>
> >><br>
> >> John<br>
> >><br>
> >><br>
> >><br>
> >><br>
> >> ______________________________<wbr>_________________<br>
> >> yt-users mailing list<br>
> >> <a href="mailto:yt-users@lists.spacepope.org" target="_blank">yt-users@lists.spacepope.org</a><br>
> >> <a href="http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org" rel="noreferrer" target="_blank">http://lists.spacepope.org/lis<wbr>tinfo.cgi/yt-users-spacepope.<wbr>org</a><br>
> >><br>
> >><br>
> ><br>
> > ______________________________<wbr>_________________<br>
> > yt-users mailing list<br>
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> ><br>
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<br>
Message: 2<br>
Date: Thu, 18 Aug 2016 13:10:08 -0500<br>
From: Nathan Goldbaum <<a href="mailto:nathan12343@gmail.com" target="_blank">nathan12343@gmail.com</a>><br>
To: Discussion of the yt analysis package<br>
<<a href="mailto:yt-users@lists.spacepope.org" target="_blank">yt-users@lists.spacepope.org</a>><br>
Subject: Re: [yt-users] Streamplot error<br>
Message-ID:<br>
<<a href="mailto:CAJXewOmv8aTEMK_Ww0_g6d1AOVfoo4O0fBoqtwsmJudwcSu4pw@mail.gmail.com" target="_blank">CAJXewOmv8aTEMK_Ww0_g6d1AOVfo<wbr>o4O0fBoqtwsmJudwcSu4pw@mail.<wbr>gmail.com</a>><br>
Content-Type: text/plain; charset="utf-8"<br>
<br>
In your script, where you have:<br>
<br>
plt.streamplot(X, Y, U, V, density=2,color='blue')<br>
<br>
replace that with:<br>
<br>
plt.streamplot(X, Y, np.array(U), np.array(V), density=2,color='blue')<br>
<br>
U and V have units attached, but streamplot doesn't know about yt's unit<br>
system, so you need to make sure they're plain old ndarrays (with no units)<br>
before passing them to matplotlib.<br>
<br>
On Thu, Aug 18, 2016 at 1:03 PM, Sushilkumar <<a href="mailto:sushil.sush19us@gmail.com" target="_blank">sushil.sush19us@gmail.com</a>><br>
wrote:<br>
<br>
> Dear yt:<br>
><br>
> I am getting the error as below while plotting streamplots. Could you let<br>
> me know what is causing this problem? drive link to my code<br>
> (yt_frb_streamplot.py) is also below.<br>
><br>
> <a href="https://drive.google.com/open?id=0B4g8shg4DL7oak5PLWVVdG5UMHc" rel="noreferrer" target="_blank">https://drive.google.com/open?<wbr>id=0B4g8shg4DL7oak5PLWVVdG5UMH<wbr>c</a><br>
><br>
> Traceback (most recent call last):<br>
> File "yt_frb_streamplot.py", line 67, in <module><br>
> plt.streamplot(X, Y, U, V, density=2,color='blue') # Here density<br>
> adjusts the density of streamlines<br>
> File "/state/partition1/anaconda/li<wbr>b/python2.7/site-packages/matp<wbr>lotlib/pyplot.py",<br>
> line 3339, in streamplot<br>
> zorder=zorder)<br>
> File "/state/partition1/anaconda/li<wbr>b/python2.7/site-packages/matp<wbr>lotlib/axes/_axes.py",<br>
> line 4204, in streamplot<br>
> zorder=zorder)<br>
> File "/state/partition1/anaconda/li<wbr>b/python2.7/site-packages/matp<wbr>lotlib/streamplot.py",<br>
> line 74, in streamplot<br>
> grid = Grid(x, y)<br>
> File "/state/partition1/anaconda/li<wbr>b/python2.7/site-packages/matp<wbr>lotlib/streamplot.py",<br>
> line 261, in __init__<br>
> assert np.allclose(x_row, x)<br>
> File "/state/partition1/anaconda/li<wbr>b/python2.7/site-packages/nump<wbr>y/core/numeric.py",<br>
> line 2372, in allclose<br>
> res = all(isclose(a, b, rtol=rtol, atol=atol, equal_nan=equal_nan))<br>
> File "/state/partition1/anaconda/li<wbr>b/python2.7/site-packages/nump<wbr>y/core/numeric.py",<br>
> line 2453, in isclose<br>
> return within_tol(x, y, atol, rtol)<br>
> File "/state/partition1/anaconda/li<wbr>b/python2.7/site-packages/nump<wbr>y/core/numeric.py",<br>
> line 2436, in within_tol<br>
> result = less_equal(abs(x-y), atol + rtol * abs(y))<br>
> File "/state/partition1/anaconda/li<wbr>b/python2.7/site-packages/yt/<wbr>units/yt_array.py",<br>
> line 732, in __radd__<br>
> lo = sanitize_units_add(self, left_object, "addition")<br>
> File "/state/partition1/anaconda/li<wbr>b/python2.7/site-packages/yt/<wbr>units/yt_array.py",<br>
> line 134, in sanitize_units_add<br>
> raise YTUnitOperationError(op_string<wbr>, inp.units, dimensionless)<br>
> yt.utilities.exceptions.YTUnit<wbr>OperationError: The addition operator for<br>
> YTArrays with units (km) and (1) is not well defined.<br>
><br>
><br>
><br>
><br>
><br>
><br>
> On Tue, Aug 16, 2016 at 1:00 PM, <<a href="mailto:yt-users-request@lists.spacepope.org" target="_blank">yt-users-request@lists.spacep<wbr>ope.org</a>><br>
> wrote:<br>
><br>
>> Send yt-users mailing list submissions to<br>
>> <a href="mailto:yt-users@lists.spacepope.org" target="_blank">yt-users@lists.spacepope.org</a><br>
>><br>
>> To subscribe or unsubscribe via the World Wide Web, visit<br>
>> <a href="http://lists.spacepope.org/listinfo.cgi/yt-users-spacepope.org" rel="noreferrer" target="_blank">http://lists.spacepope.org/li<wbr>stinfo.cgi/yt-users-spacepope.<wbr>org</a><br>
>> or, via email, send a message with subject or body 'help' to<br>
>> <a href="mailto:yt-users-request@lists.spacepope.org" target="_blank">yt-users-request@lists.spacep<wbr>ope.org</a><br>
>><br>
>> You can reach the person managing the list at<br>
>> <a href="mailto:yt-users-owner@lists.spacepope.org" target="_blank">yt-users-owner@lists.spacepop<wbr>e.org</a><br>
>><br>
>> When replying, please edit your Subject line so it is more specific<br>
>> than "Re: Contents of yt-users digest..."<br>
>><br>
>><br>
>> Today's Topics:<br>
>><br>
>> 1. Re: conda install (John Regan)<br>
>><br>
>><br>
>> ------------------------------<wbr>------------------------------<wbr>----------<br>
>><br>
>> Message: 1<br>
>> Date: Tue, 16 Aug 2016 15:34:48 +0100<br>
>> From: John Regan <<a href="mailto:johnanthonyregan@gmail.com" target="_blank">johnanthonyregan@gmail.com</a>><br>
>> To: Discussion of the yt analysis package<br>
>> <<a href="mailto:yt-users@lists.spacepope.org" target="_blank">yt-users@lists.spacepope.org</a><wbr>><br>
>> Subject: Re: [yt-users] conda install<br>
>> Message-ID:<br>
>> <CABzd+TFisnpj44UZ3NUQ4HnEHNA<wbr>uS_iQR+LzM2YRU_a9DntX=Q@mail.<br>
>> <a href="http://gmail.com" rel="noreferrer" target="_blank">gmail.com</a>><br>
>> Content-Type: text/plain; charset="utf-8"<br>
>><br>
>> perfect - thanks Nathan!<br>
>><br>
>> On Mon, Aug 15, 2016 at 5:20 PM, Nathan Goldbaum <<a href="mailto:nathan12343@gmail.com" target="_blank">nathan12343@gmail.com</a>><br>
>> wrote:<br>
>><br>
>> ><br>
>> ><br>
>> > On Mon, Aug 15, 2016 at 11:18 AM, John Regan <<br>
>> <a href="mailto:johnanthonyregan@gmail.com" target="_blank">johnanthonyregan@gmail.com</a>><br>
>> > wrote:<br>
>> ><br>
>> >> Hi All,<br>
>> >><br>
>> >> Quick question on the conda install system.<br>
>> >><br>
>> >> I'm sure this is very easy but when I update the source folder e.g.<br>
>> >> ~/ytfork/yt/analysis_modules/.<wbr>....<br>
>> >> how do I then get that reflected in the yt-conda installation e.g. in<br>
>> >> ~/ytfork/doc/yt-conda/lib/.../<wbr>analysis_modules?<br>
>> >><br>
>> >> I could copy the "source" files directly into the "lib" directory but<br>
>> I'm<br>
>> >> guessing there is a better way?<br>
>> >><br>
>> ><br>
>> > $ conda uninstall yt<br>
>> > $ pip uninstall yt<br>
>> > $ cd ~/ytfork/<br>
>> > $ python setup.py develop<br>
>> ><br>
>> > And now ~/ytfork/ will be the "active" installation.<br>
>> ><br>
>> ><br>
>> >><br>
>> >><br>
>> >> John<br>
>> >><br>
>> >><br>
>> >><br>
>> >><br>
>> >> ______________________________<wbr>_________________<br>
>> >> yt-users mailing list<br>
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> --<br>
> *SK2*<br>
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> *"**Claiming that something can move faster than light is a good<br>
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End of yt-users Digest, Vol 102, Issue 25<br>
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</blockquote></div><br><br clear="all"><br>-- <br><div data-smartmail="gmail_signature"><span style="border-collapse:collapse"><div style="color:rgb(80,0,80);font-family:arial,sans-serif;font-size:13px"><span style="font-family:arial,sans-serif;font-size:13px;border-collapse:collapse"><b><i>SK<sup>2</sup></i></b></span></div><div style="color:rgb(80,0,80);font-family:arial,sans-serif;font-size:13px"><span style="font-family:arial,sans-serif;font-size:13px;border-collapse:collapse"><b><i><sup><br></sup></i></b></span></div><div><span style="color:rgb(80,0,80);font-family:arial,sans-serif;border-collapse:collapse"><b><sup>"</sup></b></span><font color="#500050" face="arial, sans-serif"><b>Claiming that something can move faster than light is a good conversation-stopper in physics. People edge away from you in cocktail parties; friends never return phone calls. You just don’t mess with Albert Einstein.</b></font><b style="color:rgb(80,0,80);font-family:arial,sans-serif"><sup>"</sup></b></div><div style="color:rgb(80,0,80);font-family:arial,sans-serif;font-size:13px"><br></div></span></div>
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