<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><div class="">Hi yt Users,</div><div class=""><br class=""></div><div class="">I’m having a problem compiling the current development branch of yt on NASA pleiades, and I’m hoping that someone can suggest what could be going wrong. Here’s what I get when I try to compile:</div><div class=""><br class=""></div><div class=""><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">bridge4:yt mkrumhol$ /nasa/python/2.7.9/bin/python setup.py develop --prefix=/u/mkrumhol</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">running develop</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">running egg_info</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">writing requirements to yt.egg-info/requires.txt</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">writing yt.egg-info/PKG-INFO</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">writing top-level names to yt.egg-info/top_level.txt</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">writing dependency_links to yt.egg-info/dependency_links.txt</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">writing entry points to yt.egg-info/entry_points.txt</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">reading manifest file 'yt.egg-info/SOURCES.txt'</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">reading manifest template 'MANIFEST.in'</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">warning: no previously-included files found matching 'scripts/pr_backport.py'</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">no previously-included directories found matching 'doc/source/reference/api/generated'</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">no previously-included directories found matching 'doc/build'</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">writing manifest file 'yt.egg-info/SOURCES.txt'</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">running build_ext</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">pyrexc yt/analysis_modules/photon_simulator/utils.pyx --> yt/analysis_modules/photon_simulator/utils.c</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">/home3/mkrumhol/yt/yt/analysis_modules/photon_simulator/utils.pyx:6:17: Syntax error in C variable declaration</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">building 'yt.analysis_modules.photon_simulator.utils' extension</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">gcc -fno-strict-aliasing -O2 -Wno-error -pipe -DHAVE_DB_185_H -pthread -I/usr/include -I/nasa/pkgsrc/2014Q4/include/db4 -I/nasa/pkgsrc/2014Q4/include -DNDEBUG -O2 -Wno-error -pipe -DHAVE_DB_185_H -pthread -I/usr/include -I/nasa/pkgsrc/2014Q4/include/db4 -I/nasa/pkgsrc/2014Q4/include -fPIC -I/nasa/pkgsrc/2014Q4/include/python2.7 -I/nasa/pkgsrc/2014Q4/lib/python2.7/site-packages/numpy/core/include -c yt/analysis_modules/photon_simulator/utils.c -o build/temp.linux-x86_64-2.7/yt/analysis_modules/photon_simulator/utils.o</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">gcc: yt/analysis_modules/photon_simulator/utils.c: No such file or directory</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">gcc: no input files</div><div style="margin: 0px; line-height: normal; font-family: Monaco; color: rgb(245, 245, 245); background-color: rgb(0, 0, 0);" class="">error: command 'gcc' failed with exit status 1</div></div><div class=""><br class=""></div><div class="">I’m using python 2.7.9 and cython 0.23.4. The problem only occurs with the development branch; the stable branch compiles fine.</div><div class=""><br class=""></div><div class="">I’d appreciate any suggestions. Thanks.</div><br class=""><div class="">
--<br class="">Mark Krumholz<br class=""><a href="http://www.mso.anu.edu.au/~krumholz/" class="">http://www.mso.anu.edu.au/~krumholz/</a>
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